RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 ATG12O94817 140 aa14.14□□□□□ -0.15
CLN3-239ENST00000628023 RPLP1P05386 114 aaKnown RBP14.14□□□□□ -0.15
CLN3-239ENST00000628023 OR5AC1P0C628 307 aa14.14□□□□□ -0.15
CLN3-239ENST00000628023 AKR1C4P17516 323 aa14.14□□□□□ -0.15
CLN3-239ENST00000628023 PPIFP30405 207 aaKnown RBP14.14□□□□□ -0.15
CLN3-239ENST00000628023 AKR1C2P52895 323 aa14.14□□□□□ -0.15
CLN3-239ENST00000628023 RPL23AP62750 156 aaKnown RBP14.14□□□□□ -0.15
CLN3-239ENST00000628023 ZNF846Q147U1 533 aa14.14□□□□□ -0.15
CLN3-239ENST00000628023 RBMS2Q15434 407 aaKnown RBP14.14□□□□□ -0.15
CLN3-239ENST00000628023 H2BFWTQ7Z2G1 175 aa14.14□□□□□ -0.15
CLN3-239ENST00000628023 MINDY2Q8NBR6 621 aa14.14□□□□□ -0.15
CLN3-239ENST00000628023 ADAD2Q8NCV1 583 aaKnown RBP14.14□□□□□ -0.15
CLN3-239ENST00000628023 TMEM68Q96MH6 324 aa14.14□□□□□ -0.15
CLN3-239ENST00000628023 SLC25A21Q9BQT8 299 aaPredicted RBP14.14□□□□□ -0.15
CLN3-239ENST00000628023 COMMD5Q9GZQ3 224 aa14.14□□□□□ -0.15
CLN3-239ENST00000628023 ZNF355PQ9NSJ1 428 aa14.14□□□□□ -0.15
CLN3-239ENST00000628023 ZFP57Q9NU63 452 aa14.14□□□□□ -0.15
CLN3-239ENST00000628023 TRAV3A0A0B4J244 114 aa14.13□□□□□ -0.15
CLN3-239ENST00000628023 PSMB8P28062 276 aa14.13□□□□□ -0.15
CLN3-239ENST00000628023 CCR6P51684 374 aa14.13□□□□□ -0.15
CLN3-239ENST00000628023 C19orf54Q5BKX5 351 aa14.13□□□□□ -0.15
CLN3-239ENST00000628023 KLHL30-AS1Q8NEE0 82 aa14.13□□□□□ -0.15
CLN3-239ENST00000628023 OR5T1Q8NG75 326 aa14.13□□□□□ -0.15
CLN3-239ENST00000628023 OR4F17Q8NGA8 305 aa14.13□□□□□ -0.15
CLN3-239ENST00000628023 CASTOR1Q8WTX7 329 aa14.13□□□□□ -0.15
CLN3-239ENST00000628023 OR4F4Q96R69 305 aa14.13□□□□□ -0.15
CLN3-239ENST00000628023 TSC22D3Q99576 134 aa14.13□□□□□ -0.15
CLN3-239ENST00000628023 IGKV1-39P01597 117 aa14.12□□□□□ -0.15
CLN3-239ENST00000628023 IGLV1-40P01703 118 aa14.12□□□□□ -0.15
CLN3-239ENST00000628023 IGKV1D-39P04432 117 aa14.12□□□□□ -0.15
CLN3-239ENST00000628023 UCP1P25874 307 aa14.12□□□□□ -0.15
CLN3-239ENST00000628023 DHODHQ02127 395 aa14.12□□□□□ -0.15
CLN3-239ENST00000628023 RNF152Q8N8N0 203 aa14.12□□□□□ -0.15
CLN3-239ENST00000628023 SEC22AQ96IW7 307 aa14.12□□□□□ -0.15
CLN3-239ENST00000628023 TMEM222Q9H0R3 208 aa14.12□□□□□ -0.15
CLN3-239ENST00000628023 COA4Q9NYJ1 87 aa14.12□□□□□ -0.15
CLN3-239ENST00000628023 KCNIP3Q9Y2W7 256 aa14.12□□□□□ -0.15
CLN3-239ENST00000628023 ADARB2-AS1A8MUL3 147 aa14.11□□□□□ -0.15
CLN3-239ENST00000628023 SOX15O60248 233 aa14.11□□□□□ -0.15
CLN3-239ENST00000628023 RBMXL2O75526 392 aaKnown RBP14.11□□□□□ -0.15
CLN3-239ENST00000628023 ANXA3P12429 323 aa14.11□□□□□ -0.15
CLN3-239ENST00000628023 MYOD1P15172 320 aa14.11□□□□□ -0.15
CLN3-239ENST00000628023 RAB9AP51151 201 aa14.11□□□□□ -0.15
CLN3-239ENST00000628023 TPPP2P59282 170 aa14.11□□□□□ -0.15
CLN3-239ENST00000628023 OR2B8PP59922 312 aa14.11□□□□□ -0.15
CLN3-239ENST00000628023 ASPHD1Q5U4P2 390 aa14.11□□□□□ -0.15
CLN3-239ENST00000628023 ZNF695Q8IW36 515 aa14.11□□□□□ -0.15
CLN3-239ENST00000628023 OR4A16Q8NH70 328 aa14.11□□□□□ -0.15
CLN3-239ENST00000628023 TMEM230Q96A57 120 aa14.11□□□□□ -0.15
CLN3-239ENST00000628023 RRNAD1Q96FB5 475 aaKnown RBP14.11□□□□□ -0.15
CLN3-239ENST00000628023 MS4A10Q96PG2 267 aa14.11□□□□□ -0.15
CLN3-239ENST00000628023 KLK15Q9H2R5 256 aa14.11□□□□□ -0.15
CLN3-239ENST00000628023 PRNDQ9UKY0 176 aa14.11□□□□□ -0.15
CLN3-239ENST00000628023 NSG2Q9Y328 171 aa14.11□□□□□ -0.15
CLN3-239ENST00000628023 HMX3A6NHT5 357 aa14.1□□□□□ -0.15
CLN3-239ENST00000628023 LYRM1O43325 122 aa14.1□□□□□ -0.15
CLN3-239ENST00000628023 PF4P02776 101 aa14.1□□□□□ -0.15
CLN3-239ENST00000628023 TRGV3P03979 118 aa14.1□□□□□ -0.15
CLN3-239ENST00000628023 OR9G9P0C7N8 305 aa14.1□□□□□ -0.15
CLN3-239ENST00000628023 SLC25A42Q86VD7 318 aa14.1□□□□□ -0.15
CLN3-239ENST00000628023 CADM3Q8N126 398 aa14.1□□□□□ -0.15
CLN3-239ENST00000628023 CENPSQ8N2Z9 138 aa14.1□□□□□ -0.15
CLN3-239ENST00000628023 HINT2Q9BX68 163 aa14.1□□□□□ -0.15
CLN3-239ENST00000628023 QTRT1Q9BXR0 403 aaKnown RBP14.1□□□□□ -0.15
CLN3-239ENST00000628023 SLA2Q9H6Q3 261 aa14.1□□□□□ -0.15
CLN3-239ENST00000628023 FKBP11Q9NYL4 201 aa14.1□□□□□ -0.15
CLN3-239ENST00000628023 H3BUA1 57 aa14.09□□□□□ -0.15
CLN3-239ENST00000628023 NDUFB6O95139 128 aa14.09□□□□□ -0.15
CLN3-239ENST00000628023 IL6RP08887 468 aaPredicted RBP14.09□□□□□ -0.15
CLN3-239ENST00000628023 FGF2P09038 288 aa14.09□□□□□ -0.15
CLN3-239ENST00000628023 TMEM128Q5BJH2 165 aa14.09□□□□□ -0.15
CLN3-239ENST00000628023 C18orf65Q6ZTR6 163 aa14.09□□□□□ -0.15
CLN3-239ENST00000628023 C8orf86Q6ZUL3 223 aa14.09□□□□□ -0.15
CLN3-239ENST00000628023 OR1L8Q8NGR8 309 aa14.09□□□□□ -0.15
CLN3-239ENST00000628023 GLYATL2Q8WU03 294 aa14.09□□□□□ -0.15
CLN3-239ENST00000628023 RBPMSQ93062 196 aaKnown RBP14.09□□□□□ -0.15
CLN3-239ENST00000628023 GALNT14Q96FL9 552 aa14.09□□□□□ -0.15
CLN3-239ENST00000628023 OR51B2Q9Y5P1 312 aa14.09□□□□□ -0.15
CLN3-239ENST00000628023 C15orf61A6NNL5 157 aa14.08□□□□□ -0.16
CLN3-239ENST00000628023 TEX22C9J3V5 150 aa14.08□□□□□ -0.16
CLN3-239ENST00000628023 G3V4G9 280 aa14.08□□□□□ -0.16
CLN3-239ENST00000628023 CDS2O95674 445 aa14.08□□□□□ -0.16
CLN3-239ENST00000628023 IGKV1-5P01602 117 aa14.08□□□□□ -0.16
CLN3-239ENST00000628023 VAMP1P23763 118 aa14.08□□□□□ -0.16
CLN3-239ENST00000628023 SLC6A1P30531 599 aa14.08□□□□□ -0.16
CLN3-239ENST00000628023 BTCP35070 178 aa14.08□□□□□ -0.16
CLN3-239ENST00000628023 CDX1P47902 265 aaPredicted RBP14.08□□□□□ -0.16
CLN3-239ENST00000628023 TMEM268Q5VZI3 342 aa14.08□□□□□ -0.16
CLN3-239ENST00000628023 PRR13Q9NZ81 148 aa14.08□□□□□ -0.16
CLN3-239ENST00000628023 E7EUB6 86 aa14.07□□□□□ -0.16
CLN3-239ENST00000628023 PLA2G10O15496 165 aa14.07□□□□□ -0.16
CLN3-239ENST00000628023 TRAPPC2P0DI81 140 aa14.07□□□□□ -0.16
CLN3-239ENST00000628023 TRAPPC2BP0DI82 140 aa14.07□□□□□ -0.16
CLN3-239ENST00000628023 MECP2P51608 486 aaKnown RBP14.07□□□□□ -0.16
CLN3-239ENST00000628023 SRPXP78539 464 aa14.07□□□□□ -0.16
CLN3-239ENST00000628023 TMEM187Q14656 261 aa14.07□□□□□ -0.16
CLN3-239ENST00000628023 IZUMO4Q1ZYL8 232 aa14.07□□□□□ -0.16
CLN3-239ENST00000628023 BEAN1Q3B7T3 259 aa14.07□□□□□ -0.16
CLN3-239ENST00000628023 THOC7Q6I9Y2 204 aaKnown RBP14.07□□□□□ -0.16
CLN3-239ENST00000628023 REC114Q7Z4M0 266 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms