RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 PLET1Q6UQ28 207 aa15.52■□□□□ 0.08
UPF3A-211ENST00000618700 FOXRED2Q8IWF2 684 aa15.52■□□□□ 0.08
UPF3A-211ENST00000618700 SLC35G3Q8N808 338 aa15.52■□□□□ 0.08
UPF3A-211ENST00000618700 WIPF2Q8TF74 440 aaPredicted RBP15.52■□□□□ 0.08
UPF3A-211ENST00000618700 CASTOR1Q8WTX7 329 aa15.52■□□□□ 0.08
UPF3A-211ENST00000618700 NOL4LQ96MY1 436 aaPredicted RBP15.52■□□□□ 0.08
UPF3A-211ENST00000618700 PARP11Q9NR21 331 aa15.52■□□□□ 0.08
UPF3A-211ENST00000618700 A0A0G2JRQ6 117 aa15.51■□□□□ 0.07
UPF3A-211ENST00000618700 DUS4LO95620 317 aaKnown RBP15.51■□□□□ 0.07
UPF3A-211ENST00000618700 SPNP16150 400 aa15.51■□□□□ 0.07
UPF3A-211ENST00000618700 HLA-GP17693 338 aa15.51■□□□□ 0.07
UPF3A-211ENST00000618700 C4orf46Q504U0 113 aa15.51■□□□□ 0.07
UPF3A-211ENST00000618700 C19orf54Q5BKX5 351 aa15.51■□□□□ 0.07
UPF3A-211ENST00000618700 C10orf55Q5SWW7 151 aa15.51■□□□□ 0.07
UPF3A-211ENST00000618700 H2BFWTQ7Z2G1 175 aa15.51■□□□□ 0.07
UPF3A-211ENST00000618700 STPG2Q8N412 459 aa15.51■□□□□ 0.07
UPF3A-211ENST00000618700 KLHDC1Q8N7A1 406 aa15.51■□□□□ 0.07
UPF3A-211ENST00000618700 MARVELD1Q9BSK0 173 aa15.51■□□□□ 0.07
UPF3A-211ENST00000618700 A0A0B4J2A0 478 aa15.5■□□□□ 0.07
UPF3A-211ENST00000618700 PIGBOS1A0A0B4J2F0 54 aa15.5■□□□□ 0.07
UPF3A-211ENST00000618700 RAB25P57735 213 aa15.5■□□□□ 0.07
UPF3A-211ENST00000618700 IZUMO4Q1ZYL8 232 aa15.5■□□□□ 0.07
UPF3A-211ENST00000618700 FAM219AQ8IW50 185 aa15.5■□□□□ 0.07
UPF3A-211ENST00000618700 SGMS2Q8NHU3 365 aa15.5■□□□□ 0.07
UPF3A-211ENST00000618700 GRPEL2Q8TAA5 225 aa15.5■□□□□ 0.07
UPF3A-211ENST00000618700 SRSF12Q8WXF0 261 aaKnown RBP15.5■□□□□ 0.07
UPF3A-211ENST00000618700 LSM10Q969L4 123 aaKnown RBP15.5■□□□□ 0.07
UPF3A-211ENST00000618700 RRNAD1Q96FB5 475 aaKnown RBP15.5■□□□□ 0.07
UPF3A-211ENST00000618700 SHPKQ9UHJ6 478 aa15.5■□□□□ 0.07
UPF3A-211ENST00000618700 LINC00527Q9UJ94 153 aa15.5■□□□□ 0.07
UPF3A-211ENST00000618700 DNHD1Q96M86 4753 aa15.49■□□□□ 0.07
UPF3A-211ENST00000618700 DUXBA0A1W2PPF3 345 aa15.49■□□□□ 0.07
UPF3A-211ENST00000618700 C15orf61A6NNL5 157 aa15.49■□□□□ 0.07
UPF3A-211ENST00000618700 ACTL6BO94805 426 aa15.49■□□□□ 0.07
UPF3A-211ENST00000618700 CNIH1O95406 144 aa15.49■□□□□ 0.07
UPF3A-211ENST00000618700 IL5P05113 134 aa15.49■□□□□ 0.07
UPF3A-211ENST00000618700 MYOD1P15172 320 aa15.49■□□□□ 0.07
UPF3A-211ENST00000618700 VDAC1P21796 283 aa15.49■□□□□ 0.07
UPF3A-211ENST00000618700 CFHR3Q02985 330 aa15.49■□□□□ 0.07
UPF3A-211ENST00000618700 NMSQ5H8A3 153 aa15.49■□□□□ 0.07
UPF3A-211ENST00000618700 LYZL2Q7Z4W2 148 aa15.49■□□□□ 0.07
UPF3A-211ENST00000618700 OR52B4Q8NGK2 314 aa15.49■□□□□ 0.07
UPF3A-211ENST00000618700 CHPT1Q8WUD6 406 aa15.49■□□□□ 0.07
UPF3A-211ENST00000618700 MITD1Q8WV92 249 aa15.49■□□□□ 0.07
UPF3A-211ENST00000618700 WFDC12Q8WWY7 111 aa15.49■□□□□ 0.07
UPF3A-211ENST00000618700 SEC22CQ9BRL7 303 aa15.49■□□□□ 0.07
UPF3A-211ENST00000618700 FAM103A1Q9BTL3 118 aaKnown RBP15.49■□□□□ 0.07
UPF3A-211ENST00000618700 TMEM14BQ9NUH8 114 aa15.49■□□□□ 0.07
UPF3A-211ENST00000618700 PRNDQ9UKY0 176 aa15.49■□□□□ 0.07
UPF3A-211ENST00000618700 FOXA2Q9Y261 457 aaPredicted RBP15.49■□□□□ 0.07
UPF3A-211ENST00000618700 NSG2Q9Y328 171 aa15.49■□□□□ 0.07
UPF3A-211ENST00000618700 A0A0B4J293 547 aa15.48■□□□□ 0.07
UPF3A-211ENST00000618700 A0A1B0GW64 132 aa15.48■□□□□ 0.07
UPF3A-211ENST00000618700 DBX1A6NMT0 343 aa15.48■□□□□ 0.07
UPF3A-211ENST00000618700 INMT-MINDY4F8WBC2 141 aa15.48■□□□□ 0.07
UPF3A-211ENST00000618700 SNAPC5O75971 98 aa15.48■□□□□ 0.07
UPF3A-211ENST00000618700 RPL27AP46776 148 aaKnown RBP15.48■□□□□ 0.07
UPF3A-211ENST00000618700 OR2B8PP59922 312 aa15.48■□□□□ 0.07
UPF3A-211ENST00000618700 RNASE11Q8TAA1 199 aaKnown RBP15.48■□□□□ 0.07
UPF3A-211ENST00000618700 ABHD5Q8WTS1 349 aa15.48■□□□□ 0.07
UPF3A-211ENST00000618700 TRAV41A0A0B4J266 112 aa15.47■□□□□ 0.07
UPF3A-211ENST00000618700 CGB1A6NKQ9 187 aa15.47■□□□□ 0.07
UPF3A-211ENST00000618700 TEX22C9J3V5 150 aa15.47■□□□□ 0.07
UPF3A-211ENST00000618700 E7EUB6 86 aa15.47■□□□□ 0.07
UPF3A-211ENST00000618700 G3V318 75 aa15.47■□□□□ 0.07
UPF3A-211ENST00000618700 PPIFP30405 207 aaKnown RBP15.47■□□□□ 0.07
UPF3A-211ENST00000618700 RGS21Q2M5E4 152 aa15.47■□□□□ 0.07
UPF3A-211ENST00000618700 ASPHD1Q5U4P2 390 aa15.47■□□□□ 0.07
UPF3A-211ENST00000618700 Q6ZRM9 215 aa15.47■□□□□ 0.07
UPF3A-211ENST00000618700 MINDY2Q8NBR6 621 aa15.47■□□□□ 0.07
UPF3A-211ENST00000618700 COQ8AQ8NI60 647 aa15.47■□□□□ 0.07
UPF3A-211ENST00000618700 ZNF431Q8TF32 576 aaPredicted RBP15.47■□□□□ 0.07
UPF3A-211ENST00000618700 GPR146Q96CH1 333 aa15.47■□□□□ 0.07
UPF3A-211ENST00000618700 WSB1Q9Y6I7 421 aa15.47■□□□□ 0.07
UPF3A-211ENST00000618700 STAB1Q9NY15 2570 aa15.47■□□□□ 0.07
UPF3A-211ENST00000618700 ANK2Q01484 3957 aa15.47■□□□□ 0.07
UPF3A-211ENST00000618700 PSMB11A5LHX3 300 aa15.46■□□□□ 0.07
UPF3A-211ENST00000618700 MSGN1A6NI15 193 aa15.46■□□□□ 0.07
UPF3A-211ENST00000618700 PRAF2O60831 178 aa15.46■□□□□ 0.07
UPF3A-211ENST00000618700 KRTAP10-3P60369 221 aa15.46■□□□□ 0.07
UPF3A-211ENST00000618700 ECSCRQ19T08 205 aa15.46■□□□□ 0.07
UPF3A-211ENST00000618700 AARDQ4LEZ3 155 aa15.46■□□□□ 0.07
UPF3A-211ENST00000618700 AKIRIN2Q53H80 203 aa15.46■□□□□ 0.07
UPF3A-211ENST00000618700 C10orf99Q6UWK7 81 aa15.46■□□□□ 0.07
UPF3A-211ENST00000618700 ZNF429Q86V71 674 aa15.46■□□□□ 0.07
UPF3A-211ENST00000618700 LFNGQ8NES3 379 aa15.46■□□□□ 0.07
UPF3A-211ENST00000618700 OR5B3Q8NH48 314 aa15.46■□□□□ 0.07
UPF3A-211ENST00000618700 OR4A16Q8NH70 328 aa15.46■□□□□ 0.07
UPF3A-211ENST00000618700 SPIN2AQ99865 258 aa15.46■□□□□ 0.07
UPF3A-211ENST00000618700 SPIN2BQ9BPZ2 258 aa15.46■□□□□ 0.07
UPF3A-211ENST00000618700 GON7Q9BXV9 100 aa15.46■□□□□ 0.07
UPF3A-211ENST00000618700 COMMD5Q9GZQ3 224 aa15.46■□□□□ 0.07
UPF3A-211ENST00000618700 FKBP11Q9NYL4 201 aa15.46■□□□□ 0.07
UPF3A-211ENST00000618700 ZNF257Q9Y2Q1 563 aa15.46■□□□□ 0.07
UPF3A-211ENST00000618700 OR51B2Q9Y5P1 312 aa15.46■□□□□ 0.07
UPF3A-211ENST00000618700 TEX50A0A1B0GTY4 177 aa15.45■□□□□ 0.06
UPF3A-211ENST00000618700 OR1L8Q8NGR8 309 aa15.45■□□□□ 0.06
UPF3A-211ENST00000618700 TMEM68Q96MH6 324 aa15.45■□□□□ 0.06
UPF3A-211ENST00000618700 PHB2Q99623 299 aa15.45■□□□□ 0.06
UPF3A-211ENST00000618700 QTRT1Q9BXR0 403 aaKnown RBP15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms