RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 SCGB3A2Q96PL1 93 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 HIST1H4GQ99525 98 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 GGTLC1Q9BX51 225 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 OR51I1Q9H343 314 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 OR1A1Q9P1Q5 309 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 TIMM22Q9Y584 194 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 WSB1Q9Y6I7 421 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 MINOS1-NBL1R4GNA1 71 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 V9GY05 133 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 IGKV1D-43A0A0B4J1Z2 117 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 EXOC1LA0A1B0GW35 172 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 DHRS7CA6NNS2 312 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 NUPL2O15504 423 aaKnown RBP3.06□□□□□ -1.92
LINC00540-201ENST00000611481 CRXO43186 299 aaPredicted RBP3.06□□□□□ -1.92
LINC00540-201ENST00000611481 BGLAPP02818 100 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 GUSBP08236 651 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 CST2P09228 141 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 COX5BP10606 129 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 HTR1DP28221 377 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 CRABP2P29373 138 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 GABRA2P47869 451 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 RORCP51449 518 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 ZNF121P58317 390 aaPredicted RBP3.06□□□□□ -1.92
LINC00540-201ENST00000611481 AP3S2P59780 193 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 HAMPP81172 84 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 MRPS25P82663 173 aaKnown RBP3.06□□□□□ -1.92
LINC00540-201ENST00000611481 HOXC5Q00444 222 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 FMODQ06828 376 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 CLINT1Q14677 625 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 SPA17Q15506 151 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 ZNF726P1Q15940 193 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 HIST3H3Q16695 136 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 CLVS2Q5SYC1 327 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 C10orf128Q5T292 105 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 C5orf46Q6UWT4 87 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 MBOAT2Q6ZWT7 520 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 UBE2DNLQ8IWF7 75 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 OR10Z1Q8NGY1 313 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 MYOZ3Q8TDC0 251 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 TMEM190Q8WZ59 177 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 FLYWCH2Q96CP2 140 aaKnown RBP3.06□□□□□ -1.92
LINC00540-201ENST00000611481 SLC25A38Q96DW6 304 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 ADTRPQ96IZ2 230 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 OCR1Q9BZK8 76 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 TOLLIPQ9H0E2 274 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 TXNIPQ9H3M7 391 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 RNF167Q9H6Y7 350 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 REEP1Q9H902 201 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 HRASLSQ9HDD0 168 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 RPS10P5Q9NQ39 176 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 IFT46Q9NQC8 304 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 CALYQ9NYX4 217 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 HHLA2Q9UM44 414 aa3.06□□□□□ -1.92
LINC00540-201ENST00000611481 LOC102724200A0A096LPH7 203 aaPredicted RBP3.05□□□□□ -1.92
LINC00540-201ENST00000611481 A0A0B4J2E0 115 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 A0A1B0GX12 115 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 NDUFAF8A1L188 74 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 F6UB75 175 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 ZNF593O00488 134 aaPredicted RBP3.05□□□□□ -1.92
LINC00540-201ENST00000611481 TGOLN2O43493 480 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 SMIM24O75264 130 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 HLA-AP01891 365 aaKnown RBP3.05□□□□□ -1.92
LINC00540-201ENST00000611481 DBIP07108 87 aaKnown RBP3.05□□□□□ -1.92
LINC00540-201ENST00000611481 LAMP1P11279 417 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 PIPP12273 146 aaPredicted RBP3.05□□□□□ -1.92
LINC00540-201ENST00000611481 VDAC1P21796 283 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 GLP1RP43220 463 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 NKX2-5P52952 324 aaPredicted RBP3.05□□□□□ -1.92
LINC00540-201ENST00000611481 PRKCDQ05655 676 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 RAB31Q13636 194 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 ENDOGQ14249 297 aaKnown RBP3.05□□□□□ -1.92
LINC00540-201ENST00000611481 HES1Q14469 280 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 POU2AF1Q16633 256 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 NANOGP8Q6NSW7 305 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 ZCCHC23Q6ZST2 131 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 FAM19A1Q7Z5A9 133 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 LINC00596Q86U02 117 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 CBLN2Q8IUK8 224 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 C11orf53Q8IXP5 236 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 Q8N402 240 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 OR5J2Q8NH18 312 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 DYNC2LI1Q8TCX1 351 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 DEFB104AQ8WTQ1 72 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 APOBEC3DQ96AK3 386 aaPredicted RBP3.05□□□□□ -1.92
LINC00540-201ENST00000611481 RNF126Q9BV68 326 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 SLC22A4Q9H015 551 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 C20orf85Q9H1P6 137 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 ACOT13Q9NPJ3 140 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 RPS6KB2Q9UBS0 482 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 ZNF107Q9UII5 783 aaPredicted RBP3.05□□□□□ -1.92
LINC00540-201ENST00000611481 TP53TG1Q9Y2A0 90 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 SNX24Q9Y343 169 aa3.05□□□□□ -1.92
LINC00540-201ENST00000611481 NOP16Q9Y3C1 178 aaKnown RBP3.05□□□□□ -1.92
LINC00540-201ENST00000611481 IGLV4-3A0A075B6K6 122 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 IGHV2-26A0A0B4J1V2 119 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 A0A0B4J2A0 478 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 A0A0G2JRQ6 117 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 A6NIZ1 184 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 C17orf98A8MV24 154 aa3.04□□□□□ -1.92
LINC00540-201ENST00000611481 TMEM114B3SHH9 223 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms