RNA–Protein interactions for RNA: ENST00000597215.5

VRK3-213, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 836 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-213ENST00000597215 TENM1Q9UKZ4 2725 aa11.27□□□□□ -0.61
VRK3-213ENST00000597215 TRAV3A0A0B4J244 114 aa11.27□□□□□ -0.61
VRK3-213ENST00000597215 SFT2D2O95562 160 aa11.27□□□□□ -0.61
VRK3-213ENST00000597215 IGKV1-5P01602 117 aa11.27□□□□□ -0.61
VRK3-213ENST00000597215 OR9G9P0C7N8 305 aa11.27□□□□□ -0.61
VRK3-213ENST00000597215 SRSF4Q08170 494 aaKnown RBP11.27□□□□□ -0.61
VRK3-213ENST00000597215 PPP1R1AQ13522 171 aa11.27□□□□□ -0.61
VRK3-213ENST00000597215 C19orf54Q5BKX5 351 aa11.27□□□□□ -0.61
VRK3-213ENST00000597215 C10orf55Q5SWW7 151 aa11.27□□□□□ -0.61
VRK3-213ENST00000597215 TMEM268Q5VZI3 342 aa11.27□□□□□ -0.61
VRK3-213ENST00000597215 TEX38Q6PEX7 206 aa11.27□□□□□ -0.61
VRK3-213ENST00000597215 C10orf99Q6UWK7 81 aa11.27□□□□□ -0.61
VRK3-213ENST00000597215 SELENOHQ8IZQ5 122 aaKnown RBP11.27□□□□□ -0.61
VRK3-213ENST00000597215 LGI3Q8N145 548 aa11.27□□□□□ -0.61
VRK3-213ENST00000597215 C11orf44Q8N8P7 122 aa11.27□□□□□ -0.61
VRK3-213ENST00000597215 LFNGQ8NES3 379 aa11.27□□□□□ -0.61
VRK3-213ENST00000597215 LHFPL5Q8TAF8 219 aa11.27□□□□□ -0.61
VRK3-213ENST00000597215 TMEM68Q96MH6 324 aa11.27□□□□□ -0.61
VRK3-213ENST00000597215 COMMD5Q9GZQ3 224 aa11.27□□□□□ -0.61
VRK3-213ENST00000597215 NUDT15Q9NV35 164 aa11.27□□□□□ -0.61
VRK3-213ENST00000597215 FOXA2Q9Y261 457 aaPredicted RBP11.27□□□□□ -0.61
VRK3-213ENST00000597215 A0A1W2PN81 502 aa11.26□□□□□ -0.61
VRK3-213ENST00000597215 MSGN1A6NI15 193 aa11.26□□□□□ -0.61
VRK3-213ENST00000597215 IGHG4P01861 327 aa11.26□□□□□ -0.61
VRK3-213ENST00000597215 ELANEP08246 267 aa11.26□□□□□ -0.61
VRK3-213ENST00000597215 CD28P10747 220 aa11.26□□□□□ -0.61
VRK3-213ENST00000597215 ANXA7P20073 488 aaKnown RBP11.26□□□□□ -0.61
VRK3-213ENST00000597215 PPIFP30405 207 aaKnown RBP11.26□□□□□ -0.61
VRK3-213ENST00000597215 CHRNA7P36544 502 aa11.26□□□□□ -0.61
VRK3-213ENST00000597215 FOXE3Q13461 319 aa11.26□□□□□ -0.61
VRK3-213ENST00000597215 FAM219AQ8IW50 185 aa11.26□□□□□ -0.61
VRK3-213ENST00000597215 MINDY2Q8NBR6 621 aa11.26□□□□□ -0.61
VRK3-213ENST00000597215 OR4A16Q8NH70 328 aa11.26□□□□□ -0.61
VRK3-213ENST00000597215 FKBP11Q9NYL4 201 aa11.26□□□□□ -0.61
VRK3-213ENST00000597215 PRR13Q9NZ81 148 aa11.26□□□□□ -0.61
VRK3-213ENST00000597215 NSG2Q9Y328 171 aa11.26□□□□□ -0.61
VRK3-213ENST00000597215 TRAV6A0A075B6T7 132 aa11.25□□□□□ -0.61
VRK3-213ENST00000597215 C9orf170A2RU37 121 aa11.25□□□□□ -0.61
VRK3-213ENST00000597215 C15orf61A6NNL5 157 aa11.25□□□□□ -0.61
VRK3-213ENST00000597215 RBMXL2O75526 392 aaKnown RBP11.25□□□□□ -0.61
VRK3-213ENST00000597215 HLA-AP01891 365 aaKnown RBP11.25□□□□□ -0.61
VRK3-213ENST00000597215 OPN1MWP04001 364 aa11.25□□□□□ -0.61
VRK3-213ENST00000597215 H2AFB2P0C5Z0 115 aa11.25□□□□□ -0.61
VRK3-213ENST00000597215 OR4E1P0C645 316 aa11.25□□□□□ -0.61
VRK3-213ENST00000597215 P0C879 139 aa11.25□□□□□ -0.61
VRK3-213ENST00000597215 OPN1MW2P0DN77 364 aa11.25□□□□□ -0.61
VRK3-213ENST00000597215 OPN1MW3P0DN78 364 aa11.25□□□□□ -0.61
VRK3-213ENST00000597215 RAB25P57735 213 aa11.25□□□□□ -0.61
VRK3-213ENST00000597215 OR2B8PP59922 312 aa11.25□□□□□ -0.61
VRK3-213ENST00000597215 C4orf46Q504U0 113 aa11.25□□□□□ -0.61
VRK3-213ENST00000597215 CXorf66Q5JRM2 361 aaPredicted RBP11.25□□□□□ -0.61
VRK3-213ENST00000597215 THOC7Q6I9Y2 204 aaKnown RBP11.25□□□□□ -0.61
VRK3-213ENST00000597215 SLC35G3Q8N808 338 aa11.25□□□□□ -0.61
VRK3-213ENST00000597215 OR5M8Q8NGP6 311 aa11.25□□□□□ -0.61
VRK3-213ENST00000597215 OR1L8Q8NGR8 309 aa11.25□□□□□ -0.61
VRK3-213ENST00000597215 CASTOR1Q8WTX7 329 aa11.25□□□□□ -0.61
VRK3-213ENST00000597215 FYTTD1Q96QD9 318 aaKnown RBP11.25□□□□□ -0.61
VRK3-213ENST00000597215 QTRT1Q9BXR0 403 aaKnown RBP11.25□□□□□ -0.61
VRK3-213ENST00000597215 TMEM14BQ9NUH8 114 aa11.25□□□□□ -0.61
VRK3-213ENST00000597215 OR51B2Q9Y5P1 312 aa11.25□□□□□ -0.61
VRK3-213ENST00000597215 TET2Q6N021 2002 aaPredicted RBP11.25□□□□□ -0.61
VRK3-213ENST00000597215 A0A0B4J2A0 478 aa11.24□□□□□ -0.61
VRK3-213ENST00000597215 DUXBA0A1W2PPF3 345 aa11.24□□□□□ -0.61
VRK3-213ENST00000597215 TCRBV4S1A1TA0A5B7 111 aa11.24□□□□□ -0.61
VRK3-213ENST00000597215 TEX22C9J3V5 150 aa11.24□□□□□ -0.61
VRK3-213ENST00000597215 IGLV1-40P01703 118 aa11.24□□□□□ -0.61
VRK3-213ENST00000597215 MYOD1P15172 320 aa11.24□□□□□ -0.61
VRK3-213ENST00000597215 PSMB8P28062 276 aa11.24□□□□□ -0.61
VRK3-213ENST00000597215 CD83Q01151 205 aa11.24□□□□□ -0.61
VRK3-213ENST00000597215 DHRS2Q13268 280 aa11.24□□□□□ -0.61
VRK3-213ENST00000597215 IZUMO4Q1ZYL8 232 aa11.24□□□□□ -0.61
VRK3-213ENST00000597215 TCTEX1D4Q5JR98 221 aa11.24□□□□□ -0.61
VRK3-213ENST00000597215 KHDC1LQ5JSQ8 128 aa11.24□□□□□ -0.61
VRK3-213ENST00000597215 ASPHD1Q5U4P2 390 aa11.24□□□□□ -0.61
VRK3-213ENST00000597215 TMEM65Q6PI78 240 aa11.24□□□□□ -0.61
VRK3-213ENST00000597215 NRARPQ7Z6K4 114 aa11.24□□□□□ -0.61
VRK3-213ENST00000597215 LYG2Q86SG7 212 aa11.24□□□□□ -0.61
VRK3-213ENST00000597215 RNF152Q8N8N0 203 aa11.24□□□□□ -0.61
VRK3-213ENST00000597215 LRTM2Q8N967 370 aa11.24□□□□□ -0.61
VRK3-213ENST00000597215 OR5B3Q8NH48 314 aa11.24□□□□□ -0.61
VRK3-213ENST00000597215 LSM10Q969L4 123 aaKnown RBP11.24□□□□□ -0.61
VRK3-213ENST00000597215 CITED2Q99967 270 aaPredicted RBP11.24□□□□□ -0.61
VRK3-213ENST00000597215 SRSF8Q9BRL6 282 aaKnown RBP11.24□□□□□ -0.61
VRK3-213ENST00000597215 ALX4Q9H161 411 aaPredicted RBP11.24□□□□□ -0.61
VRK3-213ENST00000597215 PALMDQ9NP74 551 aa11.24□□□□□ -0.61
VRK3-213ENST00000597215 SHPKQ9UHJ6 478 aa11.24□□□□□ -0.61
VRK3-213ENST00000597215 ANK2Q01484 3957 aa11.24□□□□□ -0.61
VRK3-213ENST00000597215 A0A0G2JRQ6 117 aa11.23□□□□□ -0.61
VRK3-213ENST00000597215 TEX50A0A1B0GTY4 177 aa11.23□□□□□ -0.61
VRK3-213ENST00000597215 HMX3A6NHT5 357 aa11.23□□□□□ -0.61
VRK3-213ENST00000597215 E7EUB6 86 aa11.23□□□□□ -0.61
VRK3-213ENST00000597215 TRAPPC2P0DI81 140 aa11.23□□□□□ -0.61
VRK3-213ENST00000597215 TRAPPC2BP0DI82 140 aa11.23□□□□□ -0.61
VRK3-213ENST00000597215 APELAP0DMC3 54 aa11.23□□□□□ -0.61
VRK3-213ENST00000597215 PF4V1P10720 104 aa11.23□□□□□ -0.61
VRK3-213ENST00000597215 MECP2P51608 486 aaKnown RBP11.23□□□□□ -0.61
VRK3-213ENST00000597215 ANKRD55Q3KP44 614 aa11.23□□□□□ -0.61
VRK3-213ENST00000597215 ZNF429Q86V71 674 aa11.23□□□□□ -0.61
VRK3-213ENST00000597215 NDUFA11Q86Y39 141 aa11.23□□□□□ -0.61
VRK3-213ENST00000597215 DUSP18Q8NEJ0 188 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms