RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 OR51B2Q9Y5P1 312 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 CYSRT1A8MQ03 144 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 BOLA2-SMG1P6H3BVE0 249 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 SSSCA1O60232 199 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 DEDDO75618 318 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 IFNA17P01571 189 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 RLN2P04090 185 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 HNRNPCP07910 306 aaKnown RBP eCLIP11.69□□□□□ -0.54
VRK3-212ENST00000596814 LY6EQ16553 131 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 TMEM219Q86XT9 240 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 OR52E5Q8NH55 327 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 RBM14Q96PK6 669 aaKnown RBP11.69□□□□□ -0.54
VRK3-212ENST00000596814 COMMD5Q9GZQ3 224 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 MBD2Q9UBB5 411 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 PITPNC1Q9UKF7 332 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 ZNF257Q9Y2Q1 563 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 MOB4Q9Y3A3 225 aa11.69□□□□□ -0.54
VRK3-212ENST00000596814 A6NDX4 124 aa11.68□□□□□ -0.54
VRK3-212ENST00000596814 H0YIZ8 118 aa11.68□□□□□ -0.54
VRK3-212ENST00000596814 SYNGR2O43760 224 aa11.68□□□□□ -0.54
VRK3-212ENST00000596814 MED6O75586 246 aa11.68□□□□□ -0.54
VRK3-212ENST00000596814 ACTL6BO94805 426 aa11.68□□□□□ -0.54
VRK3-212ENST00000596814 OR2F2O95006 317 aa11.68□□□□□ -0.54
VRK3-212ENST00000596814 MYOD1P15172 320 aa11.68□□□□□ -0.54
VRK3-212ENST00000596814 SPCS3P61009 180 aa11.68□□□□□ -0.54
VRK3-212ENST00000596814 PJVKQ0ZLH3 352 aa11.68□□□□□ -0.54
VRK3-212ENST00000596814 MRGPRG-AS1Q2M3A8 158 aa11.68□□□□□ -0.54
VRK3-212ENST00000596814 PRSS54Q6PEW0 395 aa11.68□□□□□ -0.54
VRK3-212ENST00000596814 Q6YL49 198 aa11.68□□□□□ -0.54
VRK3-212ENST00000596814 Q8N9W7 124 aa11.68□□□□□ -0.54
VRK3-212ENST00000596814 OR5B3Q8NH48 314 aa11.68□□□□□ -0.54
VRK3-212ENST00000596814 OR5R1Q8NH85 324 aa11.68□□□□□ -0.54
VRK3-212ENST00000596814 CLCC1Q96S66 551 aa11.68□□□□□ -0.54
VRK3-212ENST00000596814 RBKSQ9H477 322 aa11.68□□□□□ -0.54
VRK3-212ENST00000596814 OR5AC2Q9NZP5 309 aa11.68□□□□□ -0.54
VRK3-212ENST00000596814 FXYD6-FXYD2A0A087WZ82 144 aa11.67□□□□□ -0.54
VRK3-212ENST00000596814 BTBD17A6NE02 478 aa11.67□□□□□ -0.54
VRK3-212ENST00000596814 CEBPZOSA8MTT3 80 aa11.67□□□□□ -0.54
VRK3-212ENST00000596814 IGHV4-59P01825 116 aa11.67□□□□□ -0.54
VRK3-212ENST00000596814 SLC25A4P12235 298 aa11.67□□□□□ -0.54
VRK3-212ENST00000596814 PVALBP20472 110 aaPredicted RBP11.67□□□□□ -0.54
VRK3-212ENST00000596814 MAS1LP35410 378 aa11.67□□□□□ -0.54
VRK3-212ENST00000596814 IER3P46695 156 aa11.67□□□□□ -0.54
VRK3-212ENST00000596814 HSPE1P61604 102 aaKnown RBP11.67□□□□□ -0.54
VRK3-212ENST00000596814 GNB1P62873 340 aa11.67□□□□□ -0.54
VRK3-212ENST00000596814 SCGB2A2Q13296 93 aa11.67□□□□□ -0.54
VRK3-212ENST00000596814 TNXAQ16473 311 aa11.67□□□□□ -0.54
VRK3-212ENST00000596814 PDLIM3Q53GG5 364 aaPredicted RBP11.67□□□□□ -0.54
VRK3-212ENST00000596814 SPINK9Q5DT21 86 aa11.67□□□□□ -0.54
VRK3-212ENST00000596814 NOXA1Q86UR1 476 aa11.67□□□□□ -0.54
VRK3-212ENST00000596814 OR11H4Q8NGC9 324 aa11.67□□□□□ -0.54
VRK3-212ENST00000596814 DCUN1D4Q92564 292 aa11.67□□□□□ -0.54
VRK3-212ENST00000596814 RNF126Q9BV68 326 aa11.67□□□□□ -0.54
VRK3-212ENST00000596814 PRDM13Q9H4Q3 707 aa11.67□□□□□ -0.54
VRK3-212ENST00000596814 HIVEP2P31629 2446 aa11.67□□□□□ -0.54
VRK3-212ENST00000596814 TEX50A0A1B0GTY4 177 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 L7N2F9 121 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 PLXNB1O43157 2135 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 CA2P00918 260 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 OPN1MWP04001 364 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 OPN1MW2P0DN77 364 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 OPN1MW3P0DN78 364 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 LYL1P12980 280 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 VAMP2P63027 116 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 C10orf55Q5SWW7 151 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 OR1L8Q8NGR8 309 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 SSMEM1Q8WWF3 244 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 HYLS1Q96M11 299 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 RASL11BQ9BPW5 248 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 HINT2Q9BX68 163 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 CDC42EP3Q9UKI2 254 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 HIVEP1P15822 2718 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 E5RGE8 158 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 FCN1O00602 326 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 FGF16O43320 207 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 CHST1O43916 411 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 IAPPP10997 89 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 RPL27AP46776 148 aaKnown RBP11.66□□□□□ -0.54
VRK3-212ENST00000596814 HOXA1P49639 335 aaPredicted RBP11.66□□□□□ -0.54
VRK3-212ENST00000596814 COMPP49747 757 aaPredicted RBP11.66□□□□□ -0.54
VRK3-212ENST00000596814 PRCDQ00LT1 54 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 TUSC1Q2TAM9 212 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 C16orf82Q7Z2V1 217 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 SIGLECL1Q8N7X8 197 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 C5orf56Q8N8D9 126 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 DTD1Q8TEA8 209 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 RAB40CQ96S21 281 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 C11orf1Q9H5F2 150 aa11.66□□□□□ -0.54
VRK3-212ENST00000596814 GRPEL2Q8TAA5 225 aa11.65□□□□□ -0.54
VRK3-212ENST00000596814 CIB3Q96Q77 187 aaPredicted RBP11.65□□□□□ -0.54
VRK3-212ENST00000596814 PLEKHA3Q9HB20 300 aa11.65□□□□□ -0.54
VRK3-212ENST00000596814 ENY2Q9NPA8 101 aa11.65□□□□□ -0.54
VRK3-212ENST00000596814 NDUFA4L2Q9NRX3 87 aa11.65□□□□□ -0.54
VRK3-212ENST00000596814 VPREB3Q9UKI3 123 aa11.65□□□□□ -0.54
VRK3-212ENST00000596814 MXRA5Q9NR99 2828 aa11.64□□□□□ -0.55
VRK3-212ENST00000596814 M0QZK8 103 aa11.64□□□□□ -0.55
VRK3-212ENST00000596814 ARPC5O15511 151 aa11.64□□□□□ -0.55
VRK3-212ENST00000596814 HOXA3O43365 443 aaPredicted RBP11.64□□□□□ -0.55
VRK3-212ENST00000596814 CNIH1O95406 144 aa11.64□□□□□ -0.55
VRK3-212ENST00000596814 HLA-DRB1P01911 266 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms