RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 MARCH11A6NNE9 402 aa13.61□□□□□ -0.23
SHKBP1-204ENST00000594862 UPK2O00526 184 aa13.61□□□□□ -0.23
SHKBP1-204ENST00000594862 S1PR2O95136 353 aa13.61□□□□□ -0.23
SHKBP1-204ENST00000594862 IFNA6P05013 189 aa13.61□□□□□ -0.23
SHKBP1-204ENST00000594862 CRYGCP07315 174 aa13.61□□□□□ -0.23
SHKBP1-204ENST00000594862 IL6RP08887 468 aaPredicted RBP13.61□□□□□ -0.23
SHKBP1-204ENST00000594862 PSMB6P28072 239 aa13.61□□□□□ -0.23
SHKBP1-204ENST00000594862 TMBIM6P55061 237 aa13.61□□□□□ -0.23
SHKBP1-204ENST00000594862 UCP3P55916 312 aa13.61□□□□□ -0.23
SHKBP1-204ENST00000594862 MRPS10P82664 201 aaKnown RBP13.61□□□□□ -0.23
SHKBP1-204ENST00000594862 ZNF45Q02386 682 aa13.61□□□□□ -0.23
SHKBP1-204ENST00000594862 KLF5Q13887 457 aaPredicted RBP13.61□□□□□ -0.23
SHKBP1-204ENST00000594862 ARRDC1Q8N5I2 433 aa13.61□□□□□ -0.23
SHKBP1-204ENST00000594862 OR9G4Q8NGQ1 327 aa13.61□□□□□ -0.23
SHKBP1-204ENST00000594862 PEMTQ9UBM1 199 aa13.61□□□□□ -0.23
SHKBP1-204ENST00000594862 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.6□□□□□ -0.23
SHKBP1-204ENST00000594862 HMX3A6NHT5 357 aa13.6□□□□□ -0.23
SHKBP1-204ENST00000594862 RGS5O15539 181 aa13.6□□□□□ -0.23
SHKBP1-204ENST00000594862 NHLRC4P0CG21 123 aaPredicted RBP13.6□□□□□ -0.23
SHKBP1-204ENST00000594862 SSBP1Q04837 148 aaKnown RBP13.6□□□□□ -0.23
SHKBP1-204ENST00000594862 KLK9Q2XQG4 91 aa13.6□□□□□ -0.23
SHKBP1-204ENST00000594862 C15orf32Q32M92 178 aa13.6□□□□□ -0.23
SHKBP1-204ENST00000594862 RNASE10Q5GAN6 216 aaKnown RBP13.6□□□□□ -0.23
SHKBP1-204ENST00000594862 CLVS1Q8IUQ0 354 aaPredicted RBP13.6□□□□□ -0.23
SHKBP1-204ENST00000594862 KLK9Q9UKQ9 250 aa13.6□□□□□ -0.23
SHKBP1-204ENST00000594862 IGLV1-51P01701 117 aa13.59□□□□□ -0.23
SHKBP1-204ENST00000594862 PRH1P02810 166 aa13.59□□□□□ -0.23
SHKBP1-204ENST00000594862 DEFA4P12838 97 aa13.59□□□□□ -0.23
SHKBP1-204ENST00000594862 CTRB1P17538 263 aa13.59□□□□□ -0.23
SHKBP1-204ENST00000594862 OR2B8PP59922 312 aa13.59□□□□□ -0.23
SHKBP1-204ENST00000594862 DEFA5Q01523 94 aa13.59□□□□□ -0.23
SHKBP1-204ENST00000594862 CTRB2Q6GPI1 263 aa13.59□□□□□ -0.23
SHKBP1-204ENST00000594862 FCAMRQ8WWV6 532 aa13.59□□□□□ -0.23
SHKBP1-204ENST00000594862 ZNF486Q96H40 463 aaPredicted RBP13.59□□□□□ -0.23
SHKBP1-204ENST00000594862 TSC22D3Q99576 134 aa13.59□□□□□ -0.23
SHKBP1-204ENST00000594862 RSRP1Q9BUV0 290 aa13.59□□□□□ -0.23
SHKBP1-204ENST00000594862 QTRT1Q9BXR0 403 aaKnown RBP13.59□□□□□ -0.23
SHKBP1-204ENST00000594862 SIGLEC8Q9NYZ4 499 aa13.59□□□□□ -0.23
SHKBP1-204ENST00000594862 THYN1Q9P016 225 aa13.59□□□□□ -0.23
SHKBP1-204ENST00000594862 CCDC59Q9P031 241 aaKnown RBP13.59□□□□□ -0.23
SHKBP1-204ENST00000594862 MTFP1Q9UDX5 166 aa13.59□□□□□ -0.23
SHKBP1-204ENST00000594862 SMAD5-AS1Q9Y6J3 95 aa13.59□□□□□ -0.23
SHKBP1-204ENST00000594862 H0Y980 276 aa13.58□□□□□ -0.24
SHKBP1-204ENST00000594862 SNAPC5O75971 98 aa13.58□□□□□ -0.24
SHKBP1-204ENST00000594862 OR2J3O76001 311 aa13.58□□□□□ -0.24
SHKBP1-204ENST00000594862 GP9P14770 177 aa13.58□□□□□ -0.24
SHKBP1-204ENST00000594862 SPNP16150 400 aa13.58□□□□□ -0.24
SHKBP1-204ENST00000594862 LPAR6P43657 344 aa13.58□□□□□ -0.24
SHKBP1-204ENST00000594862 RPL5P46777 297 aaKnown RBP13.58□□□□□ -0.24
SHKBP1-204ENST00000594862 SYNJ2BPP57105 145 aa13.58□□□□□ -0.24
SHKBP1-204ENST00000594862 CXorf58Q96LI9 332 aa13.58□□□□□ -0.24
SHKBP1-204ENST00000594862 FKBP11Q9NYL4 201 aa13.58□□□□□ -0.24
SHKBP1-204ENST00000594862 FBXL7Q9UJT9 491 aa13.58□□□□□ -0.24
SHKBP1-204ENST00000594862 GABARAPH6UMI1 98 aa13.57□□□□□ -0.24
SHKBP1-204ENST00000594862 RBMXL2O75526 392 aaKnown RBP13.57□□□□□ -0.24
SHKBP1-204ENST00000594862 AREGP15514 252 aa13.57□□□□□ -0.24
SHKBP1-204ENST00000594862 TAS2R19P59542 299 aa13.57□□□□□ -0.24
SHKBP1-204ENST00000594862 SPCS2Q15005 226 aa13.57□□□□□ -0.24
SHKBP1-204ENST00000594862 PHLDA2Q53GA4 152 aa13.57□□□□□ -0.24
SHKBP1-204ENST00000594862 OR1L8Q8NGR8 309 aa13.57□□□□□ -0.24
SHKBP1-204ENST00000594862 EEF1AKMT3Q96AZ1 226 aa13.57□□□□□ -0.24
SHKBP1-204ENST00000594862 PRNDQ9UKY0 176 aa13.57□□□□□ -0.24
SHKBP1-204ENST00000594862 KMT2CQ8NEZ4 4911 aaKnown RBP13.57□□□□□ -0.24
SHKBP1-204ENST00000594862 COL7A1Q02388 2944 aa13.57□□□□□ -0.24
SHKBP1-204ENST00000594862 A0A1B0GW64 132 aa13.56□□□□□ -0.24
SHKBP1-204ENST00000594862 E7EUB6 86 aa13.56□□□□□ -0.24
SHKBP1-204ENST00000594862 BMPR1BO00238 502 aa13.56□□□□□ -0.24
SHKBP1-204ENST00000594862 GGCTO75223 188 aaKnown RBP13.56□□□□□ -0.24
SHKBP1-204ENST00000594862 KRASP01116 189 aa13.56□□□□□ -0.24
SHKBP1-204ENST00000594862 TRBV12-3P01733 135 aa13.56□□□□□ -0.24
SHKBP1-204ENST00000594862 TRAPPC2P0DI81 140 aa13.56□□□□□ -0.24
SHKBP1-204ENST00000594862 TRAPPC2BP0DI82 140 aa13.56□□□□□ -0.24
SHKBP1-204ENST00000594862 PTBP1P26599 531 aaKnown RBP eCLIP13.56□□□□□ -0.24
SHKBP1-204ENST00000594862 LCN12Q6JVE5 192 aa13.56□□□□□ -0.24
SHKBP1-204ENST00000594862 TBC1D26Q86UD7 250 aa13.56□□□□□ -0.24
SHKBP1-204ENST00000594862 TMEM229BQ8NBD8 167 aa13.56□□□□□ -0.24
SHKBP1-204ENST00000594862 OR5B3Q8NH48 314 aa13.56□□□□□ -0.24
SHKBP1-204ENST00000594862 OR52I2Q8NH67 350 aa13.56□□□□□ -0.24
SHKBP1-204ENST00000594862 KLK11Q9UBX7 282 aa13.56□□□□□ -0.24
SHKBP1-204ENST00000594862 IGLV11-55A0A075B6I3 123 aa13.55□□□□□ -0.24
SHKBP1-204ENST00000594862 TRBV7-1A0A0A6YYK4 115 aa13.55□□□□□ -0.24
SHKBP1-204ENST00000594862 IGLC7A0M8Q6 106 aa13.55□□□□□ -0.24
SHKBP1-204ENST00000594862 M0QYG6 137 aa13.55□□□□□ -0.24
SHKBP1-204ENST00000594862 RPA2P15927 270 aa13.55□□□□□ -0.24
SHKBP1-204ENST00000594862 RND3P61587 244 aa13.55□□□□□ -0.24
SHKBP1-204ENST00000594862 RNASE12Q5GAN4 147 aaKnown RBP13.55□□□□□ -0.24
SHKBP1-204ENST00000594862 LAX1Q8IWV1 398 aa13.55□□□□□ -0.24
SHKBP1-204ENST00000594862 Q8N402 240 aa13.55□□□□□ -0.24
SHKBP1-204ENST00000594862 OR2K2Q8NGT1 345 aa13.55□□□□□ -0.24
SHKBP1-204ENST00000594862 LSM10Q969L4 123 aaKnown RBP13.55□□□□□ -0.24
SHKBP1-204ENST00000594862 TMEM56Q96MV1 263 aa13.55□□□□□ -0.24
SHKBP1-204ENST00000594862 FANCD2OSQ96PS1 177 aa13.55□□□□□ -0.24
SHKBP1-204ENST00000594862 ABHD1Q96SE0 405 aa13.55□□□□□ -0.24
SHKBP1-204ENST00000594862 SORL1Q92673 2214 aa13.54□□□□□ -0.24
SHKBP1-204ENST00000594862 TRAV3A0A0B4J244 114 aa13.54□□□□□ -0.24
SHKBP1-204ENST00000594862 CGB1A6NKQ9 187 aa13.54□□□□□ -0.24
SHKBP1-204ENST00000594862 ATG12O94817 140 aa13.54□□□□□ -0.24
SHKBP1-204ENST00000594862 CD74P04233 296 aa13.54□□□□□ -0.24
SHKBP1-204ENST00000594862 CD3DP04234 171 aa13.54□□□□□ -0.24
SHKBP1-204ENST00000594862 SERPINE2P07093 398 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms