RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 ZNF818PQ6ZRF7 136 aa8.06□□□□□ -1.12
LIG3-212ENST00000590181 LYSMD2Q8IV50 215 aa8.06□□□□□ -1.12
LIG3-212ENST00000590181 LAX1Q8IWV1 398 aa8.06□□□□□ -1.12
LIG3-212ENST00000590181 SLC38A6Q8IZM9 456 aa8.06□□□□□ -1.12
LIG3-212ENST00000590181 ARRDC1Q8N5I2 433 aa8.06□□□□□ -1.12
LIG3-212ENST00000590181 DMBX1Q8NFW5 382 aa8.06□□□□□ -1.12
LIG3-212ENST00000590181 OR9G4Q8NGQ1 327 aa8.06□□□□□ -1.12
LIG3-212ENST00000590181 DGCR14Q96DF8 476 aaKnown RBP8.06□□□□□ -1.12
LIG3-212ENST00000590181 RBMXL1Q96E39 390 aaKnown RBP8.06□□□□□ -1.12
LIG3-212ENST00000590181 FYTTD1Q96QD9 318 aaKnown RBP8.06□□□□□ -1.12
LIG3-212ENST00000590181 HRASLSQ9HDD0 168 aa8.06□□□□□ -1.12
LIG3-212ENST00000590181 A8MZ25 164 aa8.05□□□□□ -1.12
LIG3-212ENST00000590181 LGALS9O00182 355 aa8.05□□□□□ -1.12
LIG3-212ENST00000590181 SNAPC5O75971 98 aa8.05□□□□□ -1.12
LIG3-212ENST00000590181 IGLV1-51P01701 117 aa8.05□□□□□ -1.12
LIG3-212ENST00000590181 PSMB6P28072 239 aa8.05□□□□□ -1.12
LIG3-212ENST00000590181 HRH1P35367 487 aa8.05□□□□□ -1.12
LIG3-212ENST00000590181 SLURP1P55000 103 aa8.05□□□□□ -1.12
LIG3-212ENST00000590181 TMBIM6P55061 237 aa8.05□□□□□ -1.12
LIG3-212ENST00000590181 FXYD4P59646 89 aa8.05□□□□□ -1.12
LIG3-212ENST00000590181 NCS1P62166 190 aa8.05□□□□□ -1.12
LIG3-212ENST00000590181 OR4A47Q6IF82 309 aa8.05□□□□□ -1.12
LIG3-212ENST00000590181 LCN12Q6JVE5 192 aa8.05□□□□□ -1.12
LIG3-212ENST00000590181 GPHB5Q86YW7 130 aa8.05□□□□□ -1.12
LIG3-212ENST00000590181 OR5B3Q8NH48 314 aa8.05□□□□□ -1.12
LIG3-212ENST00000590181 RAB2BQ8WUD1 216 aa8.05□□□□□ -1.12
LIG3-212ENST00000590181 FCAMRQ8WWV6 532 aa8.05□□□□□ -1.12
LIG3-212ENST00000590181 AKIP1Q9NQ31 210 aa8.05□□□□□ -1.12
LIG3-212ENST00000590181 GAR1Q9NY12 217 aaKnown RBP8.05□□□□□ -1.12
LIG3-212ENST00000590181 CACFD1Q9UGQ2 172 aa8.05□□□□□ -1.12
LIG3-212ENST00000590181 PRNDQ9UKY0 176 aa8.05□□□□□ -1.12
LIG3-212ENST00000590181 MARCH11A6NNE9 402 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 FAM25AB3EWG3 89 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 FAM25CB3EWG5 89 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 FAM25GB3EWG6 89 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 TEX22C9J3V5 150 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 UPK2O00526 184 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 GGCTO75223 188 aaKnown RBP8.04□□□□□ -1.12
LIG3-212ENST00000590181 PMP2P02689 132 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 EIF4EP06730 217 aaKnown RBP8.04□□□□□ -1.12
LIG3-212ENST00000590181 DEFA4P12838 97 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 CTRB1P17538 263 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 ELK1P19419 428 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 ALDH3B2P48448 385 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 C15orf32Q32M92 178 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 FAM106AQ4KMX7 169 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 OR2B11Q5JQS5 317 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 CASC10Q5T4H9 136 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 CTRB2Q6GPI1 263 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 Q8N402 240 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 OR1L8Q8NGR8 309 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 MUC7Q8TAX7 377 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 ZFAND1Q8TCF1 268 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 VN1R17PQ8TDU5 208 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 EEF1AKMT3Q96AZ1 226 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 TMEM56Q96MV1 263 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 PRR25Q96S07 402 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 ASCL2Q99929 193 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 RSRP1Q9BUV0 290 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 QTRT1Q9BXR0 403 aaKnown RBP8.04□□□□□ -1.12
LIG3-212ENST00000590181 ALX4Q9H161 411 aaPredicted RBP8.04□□□□□ -1.12
LIG3-212ENST00000590181 TECRQ9NZ01 308 aaKnown RBP8.04□□□□□ -1.12
LIG3-212ENST00000590181 MTFP1Q9UDX5 166 aa8.04□□□□□ -1.12
LIG3-212ENST00000590181 PIGBOS1A0A0B4J2F0 54 aa8.03□□□□□ -1.12
LIG3-212ENST00000590181 LY86O95711 162 aa8.03□□□□□ -1.12
LIG3-212ENST00000590181 TRAPPC2P0DI81 140 aa8.03□□□□□ -1.12
LIG3-212ENST00000590181 TRAPPC2BP0DI82 140 aa8.03□□□□□ -1.12
LIG3-212ENST00000590181 GP9P14770 177 aa8.03□□□□□ -1.12
LIG3-212ENST00000590181 TGFBR1P36897 503 aa8.03□□□□□ -1.12
LIG3-212ENST00000590181 RPL5P46777 297 aaKnown RBP8.03□□□□□ -1.12
LIG3-212ENST00000590181 OR2B8PP59922 312 aa8.03□□□□□ -1.12
LIG3-212ENST00000590181 RND3P61587 244 aa8.03□□□□□ -1.12
LIG3-212ENST00000590181 EXOSC2Q13868 293 aaKnown RBP8.03□□□□□ -1.12
LIG3-212ENST00000590181 RNASE10Q5GAN6 216 aaKnown RBP8.03□□□□□ -1.12
LIG3-212ENST00000590181 VKORC1L1Q8N0U8 176 aa8.03□□□□□ -1.12
LIG3-212ENST00000590181 OR51H1Q8NH63 302 aa8.03□□□□□ -1.12
LIG3-212ENST00000590181 CASTOR1Q8WTX7 329 aa8.03□□□□□ -1.12
LIG3-212ENST00000590181 PALMDQ9NP74 551 aa8.03□□□□□ -1.12
LIG3-212ENST00000590181 TMEM140Q9NV12 185 aa8.03□□□□□ -1.12
LIG3-212ENST00000590181 FBXL7Q9UJT9 491 aa8.03□□□□□ -1.12
LIG3-212ENST00000590181 ANKRD34BA5PLL1 514 aa8.02□□□□□ -1.13
LIG3-212ENST00000590181 GABARAPH6UMI1 98 aa8.02□□□□□ -1.13
LIG3-212ENST00000590181 TNFSF12O43508 249 aa8.02□□□□□ -1.13
LIG3-212ENST00000590181 HPGDSO60760 199 aa8.02□□□□□ -1.13
LIG3-212ENST00000590181 NOL3O60936 208 aaKnown RBP8.02□□□□□ -1.13
LIG3-212ENST00000590181 FCER2P06734 321 aa8.02□□□□□ -1.13
LIG3-212ENST00000590181 SMIM18P0DKX4 95 aa8.02□□□□□ -1.13
LIG3-212ENST00000590181 PTHLHP12272 177 aa8.02□□□□□ -1.13
LIG3-212ENST00000590181 SPNP16150 400 aa8.02□□□□□ -1.13
LIG3-212ENST00000590181 HLA-DMAP28067 261 aa8.02□□□□□ -1.13
LIG3-212ENST00000590181 ELLP55199 621 aaPredicted RBP8.02□□□□□ -1.13
LIG3-212ENST00000590181 TAS2R19P59542 299 aa8.02□□□□□ -1.13
LIG3-212ENST00000590181 MEF2DQ14814 521 aa8.02□□□□□ -1.13
LIG3-212ENST00000590181 SURF2Q15527 256 aaPredicted RBP8.02□□□□□ -1.13
LIG3-212ENST00000590181 SPSB3Q6PJ21 355 aa8.02□□□□□ -1.13
LIG3-212ENST00000590181 SSX9Q7RTT3 188 aa8.02□□□□□ -1.13
LIG3-212ENST00000590181 GTSCR1Q86UQ5 136 aa8.02□□□□□ -1.13
LIG3-212ENST00000590181 SNX29P2Q8IUI4 249 aa8.02□□□□□ -1.13
LIG3-212ENST00000590181 TMEM229BQ8NBD8 167 aa8.02□□□□□ -1.13
LIG3-212ENST00000590181 TERB2Q8NHR7 220 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms