RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 BAMBIQ13145 260 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 PDGFRLQ15198 375 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 IGFBP7Q16270 282 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 LIN52Q52LA3 116 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 ATP6AP1LQ52LC2 224 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 CLEC12AQ5QGZ9 265 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 HES3Q5TGS1 186 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 LAMTOR1Q6IAA8 161 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 GUSBP11Q6P575 273 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 DHRS4L2Q6PKH6 230 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 SLC16A13Q7RTY0 426 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 NIT1Q86X76 327 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 BLIDQ8IZY5 108 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 CLDN22Q8N7P3 220 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 ARIH2OSQ8N7S6 290 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 OR4K5Q8NGD3 323 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 OR9Q1Q8NGQ5 310 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 OR5W2Q8NH69 310 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 OR4C6Q8NH72 309 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 OR1L1Q8NH94 360 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 OR13C6PQ8NH95 151 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 CD200R1Q8TD46 325 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 Q8WTZ3 238 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 ASB17Q8WXJ9 295 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 IMP4Q96G21 291 aaKnown RBP1.95□□□□□ -2.1
VPS4B-203ENST00000588323 PDXPQ96GD0 296 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 FMC1Q96HJ9 113 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 PPP3R2Q96LZ3 170 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 SPACA5Q96QH8 159 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 RBP7Q96R05 134 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 GPR22Q99680 433 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 DOK1Q99704 481 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 SIGMAR1Q99720 223 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 FAAP24Q9BTP7 215 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 SUCNR1Q9BXA5 334 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 MAP1LC3AQ9H492 121 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 ENY2Q9NPA8 101 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 NIT2Q9NQR4 276 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 FBXO6Q9NRD1 293 aaPredicted RBP1.95□□□□□ -2.1
VPS4B-203ENST00000588323 OPTCQ9UBM4 332 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 VPS29Q9UBQ0 182 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 DNAJC12Q9UKB3 198 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 UTP11Q9Y3A2 253 aaKnown RBP1.95□□□□□ -2.1
VPS4B-203ENST00000588323 UFC1Q9Y3C8 167 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 RBM7Q9Y580 266 aaKnown RBP1.95□□□□□ -2.1
VPS4B-203ENST00000588323 NIPBLQ6KC79 2804 aaeCLIP1.95□□□□□ -2.1
VPS4B-203ENST00000588323 PTPRBP23467 1997 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 UTP20O75691 2785 aaKnown RBP1.95□□□□□ -2.1
VPS4B-203ENST00000588323 PIKFYVEQ9Y2I7 2098 aa1.95□□□□□ -2.1
VPS4B-203ENST00000588323 MTCL1Q9Y4B5 1905 aaKnown RBP1.95□□□□□ -2.1
VPS4B-203ENST00000588323 EML5Q05BV3 1969 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 CELSR1Q9NYQ6 3014 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 ATRQ13535 2644 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 SVILO95425 2214 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 HIVEP2P31629 2446 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 TGIF2-C20orf24A0A0A6YYL0 155 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 A0A0X1KG70 313 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 C5orf63A6NC05 138 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 OR6C6A6NF89 314 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 C21orf140B9A014 251 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 C5orf58C9J3I9 102 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 F5H5K5 113 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 TMX2-CTNND1H3BSU7 103 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 I3L4J1 428 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 UPK1AO00322 258 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 BPY2O14599 106 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 PHYHO14832 338 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 CYB5BO43169 146 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 GGCTO75223 188 aaKnown RBP1.94□□□□□ -2.1
VPS4B-203ENST00000588323 FAM107AO95990 144 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 IGHV3-11P01762 117 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 APCSP02743 223 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 CD74P04233 296 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 BPGMP07738 259 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 MRPL3P09001 348 aaKnown RBP1.94□□□□□ -2.1
VPS4B-203ENST00000588323 OR4Q2P0C623 313 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 TSPAN19P0C672 248 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 OR56A5P0C7T3 313 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 HIST1H1EP10412 219 aaKnown RBP1.94□□□□□ -2.1
VPS4B-203ENST00000588323 NELFEP18615 380 aaKnown RBP1.94□□□□□ -2.1
VPS4B-203ENST00000588323 ATF1P18846 271 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 ERP29P30040 261 aaKnown RBP1.94□□□□□ -2.1
VPS4B-203ENST00000588323 S100A7P31151 101 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 IFNGR2P38484 337 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 LGALS7P47929 136 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 RBP2P50120 134 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 CLDN12P56749 244 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 CDC42P60953 191 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 CKS1BP61024 79 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 MRPS10P82664 201 aaKnown RBP1.94□□□□□ -2.1
VPS4B-203ENST00000588323 HPCAP84074 193 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 LOXL1Q08397 574 aaPredicted RBP1.94□□□□□ -2.1
VPS4B-203ENST00000588323 TBC1D28Q2M2D7 210 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 SMIM21Q3B7S5 101 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 SLC25A35Q3KQZ1 300 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 RNASE10Q5GAN6 216 aaKnown RBP1.94□□□□□ -2.1
VPS4B-203ENST00000588323 SAMD13Q5VXD3 122 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 SYPL2Q5VXT5 272 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 SAXO2Q658L1 398 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 CD200R1LQ6Q8B3 271 aa1.94□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms