RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 IZUMO4Q1ZYL8 232 aa12.2□□□□□ -0.46
SS18-215ENST00000580642 LRRC37A5PQ49AS3 106 aa12.2□□□□□ -0.46
SS18-215ENST00000580642 ZNF546Q86UE3 836 aa12.2□□□□□ -0.46
SS18-215ENST00000580642 TMEM86BQ8N661 226 aa12.2□□□□□ -0.46
SS18-215ENST00000580642 INO80EQ8NBZ0 244 aaPredicted RBP12.2□□□□□ -0.46
SS18-215ENST00000580642 QTRT1Q9BXR0 403 aaKnown RBP12.2□□□□□ -0.46
SS18-215ENST00000580642 C11orf1Q9H5F2 150 aa12.2□□□□□ -0.46
SS18-215ENST00000580642 ZNF430Q9H8G1 570 aaPredicted RBP12.2□□□□□ -0.46
SS18-215ENST00000580642 MBD2Q9UBB5 411 aa12.2□□□□□ -0.46
SS18-215ENST00000580642 RCL1Q9Y2P8 373 aaKnown RBP12.2□□□□□ -0.46
SS18-215ENST00000580642 MYO9AB2RTY4 2548 aa12.2□□□□□ -0.46
SS18-215ENST00000580642 TRAV3A0A0B4J244 114 aa12.19□□□□□ -0.46
SS18-215ENST00000580642 A0A1W2PN81 502 aa12.19□□□□□ -0.46
SS18-215ENST00000580642 A6NDX4 124 aa12.19□□□□□ -0.46
SS18-215ENST00000580642 BTBD17A6NE02 478 aa12.19□□□□□ -0.46
SS18-215ENST00000580642 H0YIZ8 118 aa12.19□□□□□ -0.46
SS18-215ENST00000580642 L7N2F9 121 aa12.19□□□□□ -0.46
SS18-215ENST00000580642 CHST1O43916 411 aa12.19□□□□□ -0.46
SS18-215ENST00000580642 CHRNA7P36544 502 aa12.19□□□□□ -0.46
SS18-215ENST00000580642 SRP14P37108 136 aaKnown RBP12.19□□□□□ -0.46
SS18-215ENST00000580642 POLR2GP62487 172 aaKnown RBP eCLIP12.19□□□□□ -0.46
SS18-215ENST00000580642 RPL23AP62750 156 aaKnown RBP12.19□□□□□ -0.46
SS18-215ENST00000580642 VAMP2P63027 116 aa12.19□□□□□ -0.46
SS18-215ENST00000580642 RPP30P78346 268 aaKnown RBP12.19□□□□□ -0.46
SS18-215ENST00000580642 OR2F1Q13607 317 aa12.19□□□□□ -0.46
SS18-215ENST00000580642 ZNF345Q14585 488 aa12.19□□□□□ -0.46
SS18-215ENST00000580642 PLGLAQ15195 96 aa12.19□□□□□ -0.46
SS18-215ENST00000580642 DEFB112Q30KQ8 113 aa12.19□□□□□ -0.46
SS18-215ENST00000580642 Q5BKY6 102 aa12.19□□□□□ -0.46
SS18-215ENST00000580642 ZNF562Q6V9R5 426 aa12.19□□□□□ -0.46
SS18-215ENST00000580642 Q6YL49 198 aa12.19□□□□□ -0.46
SS18-215ENST00000580642 SSMEM1Q8WWF3 244 aa12.19□□□□□ -0.46
SS18-215ENST00000580642 HIPK2Q9H2X6 1198 aa12.19□□□□□ -0.46
SS18-215ENST00000580642 NDUFA4L2Q9NRX3 87 aa12.19□□□□□ -0.46
SS18-215ENST00000580642 CDC42EP3Q9UKI2 254 aa12.19□□□□□ -0.46
SS18-215ENST00000580642 TNFSF18Q9UNG2 199 aa12.19□□□□□ -0.46
SS18-215ENST00000580642 MOB4Q9Y3A3 225 aa12.19□□□□□ -0.46
SS18-215ENST00000580642 LSM5Q9Y4Y9 91 aaKnown RBP12.19□□□□□ -0.46
SS18-215ENST00000580642 FLNAP21333 2647 aaKnown RBP12.19□□□□□ -0.46
SS18-215ENST00000580642 BAHCC1Q9P281 2608 aa12.19□□□□□ -0.46
SS18-215ENST00000580642 TEX50A0A1B0GTY4 177 aa12.18□□□□□ -0.46
SS18-215ENST00000580642 HLA-DRB1P01911 266 aa12.18□□□□□ -0.46
SS18-215ENST00000580642 IER3P46695 156 aa12.18□□□□□ -0.46
SS18-215ENST00000580642 COMPP49747 757 aaPredicted RBP12.18□□□□□ -0.46
SS18-215ENST00000580642 F2RL1P55085 397 aa12.18□□□□□ -0.46
SS18-215ENST00000580642 OR2B8PP59922 312 aa12.18□□□□□ -0.46
SS18-215ENST00000580642 HNF4GQ14541 408 aa12.18□□□□□ -0.46
SS18-215ENST00000580642 MRGPRG-AS1Q2M3A8 158 aa12.18□□□□□ -0.46
SS18-215ENST00000580642 ACOT7LQ6ZUV0 252 aa12.18□□□□□ -0.46
SS18-215ENST00000580642 OR11H4Q8NGC9 324 aa12.18□□□□□ -0.46
SS18-215ENST00000580642 DTD1Q8TEA8 209 aa12.18□□□□□ -0.46
SS18-215ENST00000580642 ZDHHC16Q969W1 377 aa12.18□□□□□ -0.46
SS18-215ENST00000580642 AQP10Q96PS8 301 aa12.18□□□□□ -0.46
SS18-215ENST00000580642 RASL11BQ9BPW5 248 aa12.18□□□□□ -0.46
SS18-215ENST00000580642 SLC25A31Q9H0C2 315 aa12.18□□□□□ -0.46
SS18-215ENST00000580642 RBKSQ9H477 322 aa12.18□□□□□ -0.46
SS18-215ENST00000580642 ENY2Q9NPA8 101 aa12.18□□□□□ -0.46
SS18-215ENST00000580642 LYRM2Q9NU23 88 aaPredicted RBP12.18□□□□□ -0.46
SS18-215ENST00000580642 U3KQ87 197 aa12.18□□□□□ -0.46
SS18-215ENST00000580642 FXYD6-FXYD2A0A087WZ82 144 aa12.17□□□□□ -0.46
SS18-215ENST00000580642 A0A0D9SG52 128 aa12.17□□□□□ -0.46
SS18-215ENST00000580642 NCBP2LA6PVI3 153 aaKnown RBP12.17□□□□□ -0.46
SS18-215ENST00000580642 CEBPZOSA8MTT3 80 aa12.17□□□□□ -0.46
SS18-215ENST00000580642 SMLR1H3BR10 107 aa12.17□□□□□ -0.46
SS18-215ENST00000580642 CD24P25063 80 aa12.17□□□□□ -0.46
SS18-215ENST00000580642 CNTFRP26992 372 aa12.17□□□□□ -0.46
SS18-215ENST00000580642 EIF2B2P49770 351 aaKnown RBP12.17□□□□□ -0.46
SS18-215ENST00000580642 BAXQ07812 192 aa12.17□□□□□ -0.46
SS18-215ENST00000580642 OR2C3Q8N628 320 aa12.17□□□□□ -0.46
SS18-215ENST00000580642 Q8N9W7 124 aa12.17□□□□□ -0.46
SS18-215ENST00000580642 DCUN1D4Q92564 292 aa12.17□□□□□ -0.46
SS18-215ENST00000580642 SLC25A33Q9BSK2 321 aa12.17□□□□□ -0.46
SS18-215ENST00000580642 FBXL15Q9H469 300 aa12.17□□□□□ -0.46
SS18-215ENST00000580642 PLEKHA3Q9HB20 300 aa12.17□□□□□ -0.46
SS18-215ENST00000580642 OR5AC2Q9NZP5 309 aa12.17□□□□□ -0.46
SS18-215ENST00000580642 AKAP9Q99996 3911 aa12.16□□□□□ -0.46
SS18-215ENST00000580642 H3BUX3 64 aa12.16□□□□□ -0.46
SS18-215ENST00000580642 SSSCA1O60232 199 aa12.16□□□□□ -0.46
SS18-215ENST00000580642 TSPAN9O75954 239 aa12.16□□□□□ -0.46
SS18-215ENST00000580642 PAX6P26367 422 aa12.16□□□□□ -0.46
SS18-215ENST00000580642 VDAC2P45880 294 aaPredicted RBP12.16□□□□□ -0.46
SS18-215ENST00000580642 RPL27AP46776 148 aaKnown RBP12.16□□□□□ -0.46
SS18-215ENST00000580642 ERHP84090 104 aaKnown RBP12.16□□□□□ -0.46
SS18-215ENST00000580642 BCL6BQ8N143 479 aaPredicted RBP12.16□□□□□ -0.46
SS18-215ENST00000580642 MFFQ9GZY8 342 aa12.16□□□□□ -0.46
SS18-215ENST00000580642 MAGT1Q9H0U3 335 aa12.16□□□□□ -0.46
SS18-215ENST00000580642 CSPG4Q6UVK1 2322 aa12.16□□□□□ -0.46
SS18-215ENST00000580642 BOLA2-SMG1P6H3BVE0 249 aa12.15□□□□□ -0.46
SS18-215ENST00000580642 LY6G6DO95868 133 aa12.15□□□□□ -0.46
SS18-215ENST00000580642 HTR2BP41595 481 aa12.15□□□□□ -0.46
SS18-215ENST00000580642 HOXA1P49639 335 aaPredicted RBP12.15□□□□□ -0.46
SS18-215ENST00000580642 PAX9P55771 341 aa12.15□□□□□ -0.46
SS18-215ENST00000580642 RBMS3Q6XE24 437 aaKnown RBP12.15□□□□□ -0.46
SS18-215ENST00000580642 C5orf56Q8N8D9 126 aa12.15□□□□□ -0.46
SS18-215ENST00000580642 TMEM68Q96MH6 324 aa12.15□□□□□ -0.46
SS18-215ENST00000580642 HEYLQ9NQ87 328 aaPredicted RBP12.15□□□□□ -0.46
SS18-215ENST00000580642 TPSG1Q9NRR2 321 aa12.15□□□□□ -0.46
SS18-215ENST00000580642 PSENENQ9NZ42 101 aa12.15□□□□□ -0.46
SS18-215ENST00000580642 VPREB3Q9UKI3 123 aa12.15□□□□□ -0.46
SS18-215ENST00000580642 NAV3Q8IVL0 2385 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms