RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 HAPLN4Q86UW8 402 aa10.96□□□□□ -0.65
SMARCE1-216ENST00000580419 GVQW1Q8N7I0 195 aa10.96□□□□□ -0.65
SMARCE1-216ENST00000580419 SECTM1Q8WVN6 248 aa10.96□□□□□ -0.65
SMARCE1-216ENST00000580419 EEF1AKMT3Q96AZ1 226 aa10.96□□□□□ -0.65
SMARCE1-216ENST00000580419 CCDC140Q96MF4 163 aa10.96□□□□□ -0.65
SMARCE1-216ENST00000580419 SLC5A7Q9GZV3 580 aa10.96□□□□□ -0.65
SMARCE1-216ENST00000580419 TUBA4BQ9H853 241 aa10.96□□□□□ -0.65
SMARCE1-216ENST00000580419 CCL28Q9NRJ3 127 aa10.96□□□□□ -0.65
SMARCE1-216ENST00000580419 STARD9Q9P2P6 4700 aa10.96□□□□□ -0.66
SMARCE1-216ENST00000580419 TRAV25A0A0B4J276 109 aa10.95□□□□□ -0.66
SMARCE1-216ENST00000580419 IGLC7A0M8Q6 106 aa10.95□□□□□ -0.66
SMARCE1-216ENST00000580419 HMX3A6NHT5 357 aa10.95□□□□□ -0.66
SMARCE1-216ENST00000580419 ZNF785A8K8V0 405 aa10.95□□□□□ -0.66
SMARCE1-216ENST00000580419 J3QRK9 145 aa10.95□□□□□ -0.66
SMARCE1-216ENST00000580419 PRH1P02810 166 aa10.95□□□□□ -0.66
SMARCE1-216ENST00000580419 CLEC2LP0C7M8 214 aa10.95□□□□□ -0.66
SMARCE1-216ENST00000580419 FOLR2P14207 255 aa10.95□□□□□ -0.66
SMARCE1-216ENST00000580419 GNRHRP30968 328 aa10.95□□□□□ -0.66
SMARCE1-216ENST00000580419 TAS2R46P59540 309 aa10.95□□□□□ -0.66
SMARCE1-216ENST00000580419 CD300EQ496F6 205 aaPredicted RBP10.95□□□□□ -0.66
SMARCE1-216ENST00000580419 OR2B11Q5JQS5 317 aa10.95□□□□□ -0.66
SMARCE1-216ENST00000580419 VN1R17PQ8TDU5 208 aa10.95□□□□□ -0.66
SMARCE1-216ENST00000580419 MOB3AQ96BX8 217 aa10.95□□□□□ -0.66
SMARCE1-216ENST00000580419 VCX3AQ9NNX9 186 aa10.95□□□□□ -0.66
SMARCE1-216ENST00000580419 IZUMO1RA6ND01 250 aa10.94□□□□□ -0.66
SMARCE1-216ENST00000580419 CGB1A6NKQ9 187 aa10.94□□□□□ -0.66
SMARCE1-216ENST00000580419 UPK2O00526 184 aa10.94□□□□□ -0.66
SMARCE1-216ENST00000580419 TPPPO94811 219 aa10.94□□□□□ -0.66
SMARCE1-216ENST00000580419 C8orf88P0DMB2 117 aa10.94□□□□□ -0.66
SMARCE1-216ENST00000580419 AREGP15514 252 aa10.94□□□□□ -0.66
SMARCE1-216ENST00000580419 CBLN1P23435 193 aa10.94□□□□□ -0.66
SMARCE1-216ENST00000580419 F2RP25116 425 aa10.94□□□□□ -0.66
SMARCE1-216ENST00000580419 PTBP1P26599 531 aaKnown RBP eCLIP10.94□□□□□ -0.662e-22■■■■■ 51.6
SMARCE1-216ENST00000580419 DEFA5Q01523 94 aa10.94□□□□□ -0.66
SMARCE1-216ENST00000580419 NEDD8Q15843 81 aa10.94□□□□□ -0.66
SMARCE1-216ENST00000580419 IL17DQ8TAD2 202 aa10.94□□□□□ -0.66
SMARCE1-216ENST00000580419 QTRT1Q9BXR0 403 aaKnown RBP10.94□□□□□ -0.66
SMARCE1-216ENST00000580419 COMMD5Q9GZQ3 224 aa10.94□□□□□ -0.66
SMARCE1-216ENST00000580419 RNF167Q9H6Y7 350 aa10.94□□□□□ -0.66
SMARCE1-216ENST00000580419 RYR2Q92736 4967 aa10.94□□□□□ -0.66
SMARCE1-216ENST00000580419 A0A087WXM4 84 aa10.93□□□□□ -0.66
SMARCE1-216ENST00000580419 NDUFB8O95169 186 aa10.93□□□□□ -0.66
SMARCE1-216ENST00000580419 DEFA4P12838 97 aa10.93□□□□□ -0.66
SMARCE1-216ENST00000580419 ARL3P36405 182 aa10.93□□□□□ -0.66
SMARCE1-216ENST00000580419 HERV-K104P61576 105 aa10.93□□□□□ -0.66
SMARCE1-216ENST00000580419 ANKRD55Q3KP44 614 aa10.93□□□□□ -0.66
SMARCE1-216ENST00000580419 LPCAT3Q6P1A2 487 aa10.93□□□□□ -0.66
SMARCE1-216ENST00000580419 ZNF818PQ6ZRF7 136 aa10.93□□□□□ -0.66
SMARCE1-216ENST00000580419 CMTM1Q8IZ96 169 aa10.93□□□□□ -0.66
SMARCE1-216ENST00000580419 OR1L6Q8NGR2 347 aa10.93□□□□□ -0.66
SMARCE1-216ENST00000580419 DYNLRB2Q8TF09 96 aa10.93□□□□□ -0.66
SMARCE1-216ENST00000580419 YIPF6Q96EC8 236 aa10.93□□□□□ -0.66
SMARCE1-216ENST00000580419 NEURL2Q9BR09 285 aa10.93□□□□□ -0.66
SMARCE1-216ENST00000580419 HRASLSQ9HDD0 168 aa10.93□□□□□ -0.66
SMARCE1-216ENST00000580419 PALMDQ9NP74 551 aa10.93□□□□□ -0.66
SMARCE1-216ENST00000580419 IFT46Q9NQC8 304 aa10.93□□□□□ -0.66
SMARCE1-216ENST00000580419 CEPT1Q9Y6K0 416 aa10.93□□□□□ -0.66
SMARCE1-216ENST00000580419 DNAH1Q9P2D7 4330 aa10.93□□□□□ -0.66
SMARCE1-216ENST00000580419 TMEM213A2RRL7 107 aa10.92□□□□□ -0.66
SMARCE1-216ENST00000580419 SULT1C2O00338 296 aa10.92□□□□□ -0.66
SMARCE1-216ENST00000580419 OR2C1O95371 312 aa10.92□□□□□ -0.66
SMARCE1-216ENST00000580419 TNFAIP8O95379 198 aa10.92□□□□□ -0.66
SMARCE1-216ENST00000580419 MYOD1P15172 320 aa10.92□□□□□ -0.66
SMARCE1-216ENST00000580419 RPS19P39019 145 aaKnown RBP10.92□□□□□ -0.66
SMARCE1-216ENST00000580419 SPSB3Q6PJ21 355 aa10.92□□□□□ -0.66
SMARCE1-216ENST00000580419 SLC16A13Q7RTY0 426 aa10.92□□□□□ -0.66
SMARCE1-216ENST00000580419 GDPD1Q8N9F7 314 aa10.92□□□□□ -0.66
SMARCE1-216ENST00000580419 ZNF502Q8TBZ5 544 aa10.92□□□□□ -0.66
SMARCE1-216ENST00000580419 SLC25A46Q96AG3 418 aa10.92□□□□□ -0.66
SMARCE1-216ENST00000580419 HIPK2Q9H2X6 1198 aa10.92□□□□□ -0.66
SMARCE1-216ENST00000580419 SCPEP1Q9HB40 452 aa10.92□□□□□ -0.66
SMARCE1-216ENST00000580419 TMEM140Q9NV12 185 aa10.92□□□□□ -0.66
SMARCE1-216ENST00000580419 FKBP11Q9NYL4 201 aa10.92□□□□□ -0.66
SMARCE1-216ENST00000580419 MRPL27Q9P0M9 148 aaKnown RBP10.92□□□□□ -0.66
SMARCE1-216ENST00000580419 LCE6AA0A183 80 aa10.91□□□□□ -0.66
SMARCE1-216ENST00000580419 MARCH11A6NNE9 402 aa10.91□□□□□ -0.66
SMARCE1-216ENST00000580419 PPP5D1E7EU14 171 aa10.91□□□□□ -0.66
SMARCE1-216ENST00000580419 TNFSF12O43508 249 aa10.91□□□□□ -0.66
SMARCE1-216ENST00000580419 PGLYRP1O75594 196 aaPredicted RBP10.91□□□□□ -0.66
SMARCE1-216ENST00000580419 APOA1P02647 267 aa10.91□□□□□ -0.66
SMARCE1-216ENST00000580419 CLEC3BP05452 202 aa10.91□□□□□ -0.66
SMARCE1-216ENST00000580419 SERPINE2P07093 398 aa10.91□□□□□ -0.66
SMARCE1-216ENST00000580419 PRSS3P35030 304 aa10.91□□□□□ -0.66
SMARCE1-216ENST00000580419 CD81P60033 236 aa10.91□□□□□ -0.66
SMARCE1-216ENST00000580419 ERVK-16P61578 105 aa10.91□□□□□ -0.66
SMARCE1-216ENST00000580419 TMEM69Q5SWH9 247 aa10.91□□□□□ -0.66
SMARCE1-216ENST00000580419 ZNF57Q68EA5 555 aaPredicted RBP10.91□□□□□ -0.66
SMARCE1-216ENST00000580419 CLEC19AQ6UXS0 136 aa10.91□□□□□ -0.66
SMARCE1-216ENST00000580419 SSX9Q7RTT3 188 aa10.91□□□□□ -0.66
SMARCE1-216ENST00000580419 OR1L8Q8NGR8 309 aa10.91□□□□□ -0.66
SMARCE1-216ENST00000580419 OR6F1Q8NGZ6 308 aa10.91□□□□□ -0.66
SMARCE1-216ENST00000580419 OR5B3Q8NH48 314 aa10.91□□□□□ -0.66
SMARCE1-216ENST00000580419 DGCR14Q96DF8 476 aaKnown RBP10.91□□□□□ -0.66
SMARCE1-216ENST00000580419 TSC22D3Q99576 134 aa10.91□□□□□ -0.66
SMARCE1-216ENST00000580419 FAM110AQ9BQ89 295 aa10.91□□□□□ -0.66
SMARCE1-216ENST00000580419 ZNF436Q9C0F3 470 aaPredicted RBP10.91□□□□□ -0.66
SMARCE1-216ENST00000580419 NDUFA4L2Q9NRX3 87 aa10.91□□□□□ -0.66
SMARCE1-216ENST00000580419 EHFQ9NZC4 300 aa10.91□□□□□ -0.66
SMARCE1-216ENST00000580419 TRAPPC2P0DI81 140 aa10.9□□□□□ -0.66
SMARCE1-216ENST00000580419 TRAPPC2BP0DI82 140 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 474.2 ms