RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 SMCO3A2RU48 225 aa8.28□□□□□ -1.08
VPS53-220ENST00000576149 DPRXA6NFQ7 191 aa8.28□□□□□ -1.08
VPS53-220ENST00000576149 PAGE4O60829 102 aa8.28□□□□□ -1.08
VPS53-220ENST00000576149 MMP23AO75900 390 aa8.28□□□□□ -1.08
VPS53-220ENST00000576149 TNFRSF1AP19438 455 aa8.28□□□□□ -1.08
VPS53-220ENST00000576149 OPRK1P41145 380 aa8.28□□□□□ -1.08
VPS53-220ENST00000576149 HSPE1P61604 102 aaKnown RBP8.28□□□□□ -1.08
VPS53-220ENST00000576149 POU2AF1Q16633 256 aa8.28□□□□□ -1.08
VPS53-220ENST00000576149 GCSAMLQ5JQS6 135 aa8.28□□□□□ -1.08
VPS53-220ENST00000576149 C1orf87Q8N0U7 546 aa8.28□□□□□ -1.08
VPS53-220ENST00000576149 OR13D1Q8NGV5 346 aa8.28□□□□□ -1.08
VPS53-220ENST00000576149 OR4F5Q8NH21 305 aa8.28□□□□□ -1.08
VPS53-220ENST00000576149 RPUSD4Q96CM3 377 aaKnown RBP8.28□□□□□ -1.08
VPS53-220ENST00000576149 FAM210BQ96KR6 192 aa8.28□□□□□ -1.08
VPS53-220ENST00000576149 OR4F4Q96R69 305 aa8.28□□□□□ -1.08
VPS53-220ENST00000576149 TCEAL7Q9BRU2 100 aa8.28□□□□□ -1.08
VPS53-220ENST00000576149 MS4A5Q9H3V2 200 aa8.28□□□□□ -1.08
VPS53-220ENST00000576149 TMEM14BQ9NUH8 114 aa8.28□□□□□ -1.08
VPS53-220ENST00000576149 TP53TG5Q9Y2B4 290 aa8.28□□□□□ -1.08
VPS53-220ENST00000576149 C17orf100A8MU93 164 aa8.27□□□□□ -1.09
VPS53-220ENST00000576149 YIF1AO95070 293 aa8.27□□□□□ -1.09
VPS53-220ENST00000576149 LIPFP07098 398 aa8.27□□□□□ -1.09
VPS53-220ENST00000576149 OR4A8P0C604 315 aa8.27□□□□□ -1.09
VPS53-220ENST00000576149 CCL8P80075 99 aa8.27□□□□□ -1.09
VPS53-220ENST00000576149 ADIRFQ15847 76 aa8.27□□□□□ -1.09
VPS53-220ENST00000576149 SLC25A48Q6ZT89 311 aaKnown RBP8.27□□□□□ -1.09
VPS53-220ENST00000576149 WFDC8Q8IUA0 241 aa8.27□□□□□ -1.09
VPS53-220ENST00000576149 CISD2Q8N5K1 135 aaKnown RBP8.27□□□□□ -1.09
VPS53-220ENST00000576149 ZCCHC14Q8WYQ9 949 aaKnown RBP8.27□□□□□ -1.09
VPS53-220ENST00000576149 SNRNP40Q96DI7 357 aaKnown RBP8.27□□□□□ -1.09
VPS53-220ENST00000576149 MGST2Q99735 147 aa8.27□□□□□ -1.09
VPS53-220ENST00000576149 SSX3Q99909 188 aa8.27□□□□□ -1.09
VPS53-220ENST00000576149 PARLQ9H300 379 aa8.27□□□□□ -1.09
VPS53-220ENST00000576149 RPUSD1Q9UJJ7 312 aaKnown RBP8.27□□□□□ -1.09
VPS53-220ENST00000576149 HCFC1P51610 2035 aa8.27□□□□□ -1.09
VPS53-220ENST00000576149 DSCAML1Q8TD84 2053 aa8.27□□□□□ -1.09
VPS53-220ENST00000576149 TRBV24-1A0A075B6N3 115 aa8.27□□□□□ -1.09
VPS53-220ENST00000576149 TRAV38-1A0A0B4J264 116 aa8.27□□□□□ -1.09
VPS53-220ENST00000576149 hADV38S2A0JD32 116 aa8.27□□□□□ -1.09
VPS53-220ENST00000576149 HRASP01112 189 aa8.27□□□□□ -1.09
VPS53-220ENST00000576149 THBDP07204 575 aa8.27□□□□□ -1.09
VPS53-220ENST00000576149 HOXA5P20719 270 aa8.27□□□□□ -1.09
VPS53-220ENST00000576149 RPL23P62829 140 aaKnown RBP8.27□□□□□ -1.09
VPS53-220ENST00000576149 BSXQ3C1V8 233 aa8.27□□□□□ -1.09
VPS53-220ENST00000576149 Q8NA96 180 aa8.27□□□□□ -1.09
VPS53-220ENST00000576149 GGTLC1Q9BX51 225 aa8.27□□□□□ -1.09
VPS53-220ENST00000576149 JKAMPQ9P055 326 aa8.27□□□□□ -1.09
VPS53-220ENST00000576149 LSM4Q9Y4Z0 139 aaKnown RBP8.27□□□□□ -1.09
VPS53-220ENST00000576149 LINC00312Q9Y6C7 94 aa8.27□□□□□ -1.09
VPS53-220ENST00000576149 RAI1Q7Z5J4 1906 aaPredicted RBP8.26□□□□□ -1.09
VPS53-220ENST00000576149 TMPRSS2O15393 492 aa8.26□□□□□ -1.09
VPS53-220ENST00000576149 HIST1H2BKO60814 126 aa8.26□□□□□ -1.09
VPS53-220ENST00000576149 TRGC2P03986 189 aa8.26□□□□□ -1.09
VPS53-220ENST00000576149 HIST1H2BJP06899 126 aa8.26□□□□□ -1.09
VPS53-220ENST00000576149 IL6RP08887 468 aaPredicted RBP8.26□□□□□ -1.09
VPS53-220ENST00000576149 RNF224P0DH78 156 aa8.26□□□□□ -1.09
VPS53-220ENST00000576149 CT45A6P0DMU7 189 aa8.26□□□□□ -1.09
VPS53-220ENST00000576149 CT45A5P0DMU8 189 aa8.26□□□□□ -1.09
VPS53-220ENST00000576149 CT45A7P0DMV0 189 aa8.26□□□□□ -1.09
VPS53-220ENST00000576149 HIST1H2BOP23527 126 aa8.26□□□□□ -1.09
VPS53-220ENST00000576149 HIST1H2BBP33778 126 aa8.26□□□□□ -1.09
VPS53-220ENST00000576149 HIST1H2BDP58876 126 aa8.26□□□□□ -1.09
VPS53-220ENST00000576149 HIST1H2BCP62807 126 aa8.26□□□□□ -1.09
VPS53-220ENST00000576149 BSPH1Q075Z2 132 aa8.26□□□□□ -1.09
VPS53-220ENST00000576149 HIST2H2BEQ16778 126 aa8.26□□□□□ -1.09
VPS53-220ENST00000576149 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.26□□□□□ -1.09
VPS53-220ENST00000576149 NCMAPQ5T1S8 102 aa8.26□□□□□ -1.09
VPS53-220ENST00000576149 HIST1H2BHQ93079 126 aa8.26□□□□□ -1.09
VPS53-220ENST00000576149 NEIL1Q96FI4 390 aaPredicted RBP8.26□□□□□ -1.09
VPS53-220ENST00000576149 C1orf159Q96HA4 380 aa8.26□□□□□ -1.09
VPS53-220ENST00000576149 HIST1H2BNQ99877 126 aa8.26□□□□□ -1.09
VPS53-220ENST00000576149 HIST1H2BMQ99879 126 aa8.26□□□□□ -1.09
VPS53-220ENST00000576149 NPVFQ9HCQ7 196 aa8.26□□□□□ -1.09
VPS53-220ENST00000576149 DOK5Q9P104 306 aa8.26□□□□□ -1.09
VPS53-220ENST00000576149 PXMP4Q9Y6I8 212 aa8.26□□□□□ -1.09
VPS53-220ENST00000576149 A0A1W2PPV4 95 aa8.25□□□□□ -1.09
VPS53-220ENST00000576149 NKX6-3A6NJ46 265 aa8.25□□□□□ -1.09
VPS53-220ENST00000576149 C22orf46C9J442 243 aa8.25□□□□□ -1.09
VPS53-220ENST00000576149 C11orf94C9JXX5 98 aa8.25□□□□□ -1.09
VPS53-220ENST00000576149 TGOLN2O43493 480 aa8.25□□□□□ -1.09
VPS53-220ENST00000576149 GFRALQ6UXV0 394 aa8.25□□□□□ -1.09
VPS53-220ENST00000576149 SLC16A13Q7RTY0 426 aa8.25□□□□□ -1.09
VPS53-220ENST00000576149 C16orf82Q7Z2V1 217 aa8.25□□□□□ -1.09
VPS53-220ENST00000576149 ZCCHC24Q8N2G6 241 aaKnown RBP8.25□□□□□ -1.09
VPS53-220ENST00000576149 NANPQ8TBE9 248 aa8.25□□□□□ -1.09
VPS53-220ENST00000576149 TNFRSF14Q92956 283 aa8.25□□□□□ -1.09
VPS53-220ENST00000576149 PATZ1Q9HBE1 687 aaKnown RBP8.25□□□□□ -1.09
VPS53-220ENST00000576149 ZNF835Q9Y2P0 537 aa8.25□□□□□ -1.09
VPS53-220ENST00000576149 TET2Q6N021 2002 aaPredicted RBP8.25□□□□□ -1.09
VPS53-220ENST00000576149 LINC00587B1AMM8 73 aa8.25□□□□□ -1.09
VPS53-220ENST00000576149 NDUFB7P17568 137 aa8.25□□□□□ -1.09
VPS53-220ENST00000576149 NPPCP23582 126 aa8.25□□□□□ -1.09
VPS53-220ENST00000576149 NPY1RP25929 384 aa8.25□□□□□ -1.09
VPS53-220ENST00000576149 NDUFA6P56556 154 aa8.25□□□□□ -1.09
VPS53-220ENST00000576149 MEF2CQ06413 473 aaPredicted RBP8.25□□□□□ -1.09
VPS53-220ENST00000576149 ARSJQ5FYB0 599 aaPredicted RBP8.25□□□□□ -1.09
VPS53-220ENST00000576149 MIC13Q5XKP0 118 aa8.25□□□□□ -1.09
VPS53-220ENST00000576149 SSX8Q7RTT4 187 aa8.25□□□□□ -1.09
VPS53-220ENST00000576149 OR10A7Q8NGE5 316 aa8.25□□□□□ -1.09
VPS53-220ENST00000576149 ENY2Q9NPA8 101 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms