RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 GNRHRP30968 328 aa11.19□□□□□ -0.62
VPS53-218ENST00000575207 DAPP51397 102 aa11.19□□□□□ -0.62
VPS53-218ENST00000575207 ACTL10Q5JWF8 245 aa11.19□□□□□ -0.62
VPS53-218ENST00000575207 JAGN1Q8N5M9 183 aa11.19□□□□□ -0.62
VPS53-218ENST00000575207 ACBD7Q8N6N7 88 aa11.19□□□□□ -0.62
VPS53-218ENST00000575207 OR6M1Q8NGM8 313 aa11.19□□□□□ -0.62
VPS53-218ENST00000575207 ORAI1Q96D31 301 aa11.19□□□□□ -0.62
VPS53-218ENST00000575207 MRPL48Q96GC5 212 aaKnown RBP11.19□□□□□ -0.62
VPS53-218ENST00000575207 ADTRPQ96IZ2 230 aa11.19□□□□□ -0.62
VPS53-218ENST00000575207 IMPAD1Q9NX62 359 aa11.19□□□□□ -0.62
VPS53-218ENST00000575207 XCL2Q9UBD3 114 aa11.19□□□□□ -0.62
VPS53-218ENST00000575207 NUPL2O15504 423 aaKnown RBP11.18□□□□□ -0.62
VPS53-218ENST00000575207 KBTBD11O94819 623 aa11.18□□□□□ -0.62
VPS53-218ENST00000575207 ALDH3B2P48448 385 aa11.18□□□□□ -0.62
VPS53-218ENST00000575207 DEFB107AQ8IZN7 70 aa11.18□□□□□ -0.62
VPS53-218ENST00000575207 LILRB2Q8N423 598 aa11.18□□□□□ -0.62
VPS53-218ENST00000575207 ATP6V0BQ99437 205 aa11.18□□□□□ -0.62
VPS53-218ENST00000575207 DCUN1D5Q9BTE7 237 aa11.18□□□□□ -0.62
VPS53-218ENST00000575207 ZNF586Q9NXT0 402 aa11.18□□□□□ -0.62
VPS53-218ENST00000575207 RFNGQ9Y644 331 aa11.18□□□□□ -0.62
VPS53-218ENST00000575207 A0A087WTM6 91 aa11.17□□□□□ -0.62
VPS53-218ENST00000575207 TRAV14DV4A0A0A6YYC5 116 aa11.17□□□□□ -0.62
VPS53-218ENST00000575207 TRBV6-6A0A0A6YYG2 114 aa11.17□□□□□ -0.62
VPS53-218ENST00000575207 IGKV1-6A0A0C4DH72 117 aa11.17□□□□□ -0.62
VPS53-218ENST00000575207 LINC00473A8K010 186 aa11.17□□□□□ -0.62
VPS53-218ENST00000575207 DUTP33316 252 aaKnown RBP11.17□□□□□ -0.62
VPS53-218ENST00000575207 RPL11P62913 178 aaKnown RBP11.17□□□□□ -0.62
VPS53-218ENST00000575207 MRPL28Q13084 256 aaKnown RBP11.17□□□□□ -0.62
VPS53-218ENST00000575207 VKORC1L1Q8N0U8 176 aa11.17□□□□□ -0.62
VPS53-218ENST00000575207 SYS1Q8N2H4 156 aa11.17□□□□□ -0.62
VPS53-218ENST00000575207 DUSP18Q8NEJ0 188 aa11.17□□□□□ -0.62
VPS53-218ENST00000575207 DGCR14Q96DF8 476 aaKnown RBP11.17□□□□□ -0.62
VPS53-218ENST00000575207 OR10C1Q96KK4 312 aa11.17□□□□□ -0.62
VPS53-218ENST00000575207 UPK3BQ9BT76 320 aa11.17□□□□□ -0.62
VPS53-218ENST00000575207 MAGT1Q9H0U3 335 aa11.17□□□□□ -0.62
VPS53-218ENST00000575207 RIMS4Q9H426 269 aaPredicted RBP11.17□□□□□ -0.62
VPS53-218ENST00000575207 Q9N2K0 584 aa11.17□□□□□ -0.62
VPS53-218ENST00000575207 RABAC1Q9UI14 185 aa11.17□□□□□ -0.62
VPS53-218ENST00000575207 MGAT4AQ9UM21 535 aa11.17□□□□□ -0.62
VPS53-218ENST00000575207 HMGB1P1B2RPK0 211 aaPredicted RBP11.16□□□□□ -0.62
VPS53-218ENST00000575207 YIF1AO95070 293 aa11.16□□□□□ -0.62
VPS53-218ENST00000575207 DNAH10OSP0CZ25 163 aa11.16□□□□□ -0.62
VPS53-218ENST00000575207 IGFBP3P17936 291 aaPredicted RBP11.16□□□□□ -0.62
VPS53-218ENST00000575207 FGF9P31371 208 aaPredicted RBP11.16□□□□□ -0.62
VPS53-218ENST00000575207 KRTAP10-4P60372 401 aaPredicted RBP11.16□□□□□ -0.62
VPS53-218ENST00000575207 DAD1P61803 113 aa11.16□□□□□ -0.62
VPS53-218ENST00000575207 NUTF2P61970 127 aaKnown RBP11.16□□□□□ -0.62
VPS53-218ENST00000575207 ARFRP1Q13795 201 aa11.16□□□□□ -0.62
VPS53-218ENST00000575207 KIR3DS1Q14943 382 aa11.16□□□□□ -0.62
VPS53-218ENST00000575207 OR2G6Q5TZ20 316 aa11.16□□□□□ -0.62
VPS53-218ENST00000575207 OR8J1Q8NGP2 316 aa11.16□□□□□ -0.62
VPS53-218ENST00000575207 VSTM2AQ8TAG5 236 aa11.16□□□□□ -0.62
VPS53-218ENST00000575207 TMEM167AQ8TBQ9 72 aa11.16□□□□□ -0.62
VPS53-218ENST00000575207 ST8SIA3O43173 380 aa11.15□□□□□ -0.62
VPS53-218ENST00000575207 OR2B8PP59922 312 aa11.15□□□□□ -0.62
VPS53-218ENST00000575207 CLINT1Q14677 625 aa11.15□□□□□ -0.62
VPS53-218ENST00000575207 TMEM69Q5SWH9 247 aa11.15□□□□□ -0.62
VPS53-218ENST00000575207 ADGRG5Q8IZF4 528 aa11.15□□□□□ -0.62
VPS53-218ENST00000575207 UBAC2Q8NBM4 344 aa11.15□□□□□ -0.62
VPS53-218ENST00000575207 GRAMD2BQ96HH9 432 aa11.15□□□□□ -0.62
VPS53-218ENST00000575207 MYCBPQ99417 103 aaPredicted RBP11.15□□□□□ -0.62
VPS53-218ENST00000575207 GAS8-AS1O95177 125 aa11.14□□□□□ -0.63
VPS53-218ENST00000575207 EIF4EP06730 217 aaKnown RBP11.14□□□□□ -0.63
VPS53-218ENST00000575207 SERPINB10P48595 397 aa11.14□□□□□ -0.63
VPS53-218ENST00000575207 GBX2P52951 348 aaPredicted RBP11.14□□□□□ -0.63
VPS53-218ENST00000575207 MS4A2Q01362 244 aa11.14□□□□□ -0.63
VPS53-218ENST00000575207 LHFPL3Q86UP9 236 aa11.14□□□□□ -0.63
VPS53-218ENST00000575207 ST8SIA2Q92186 375 aa11.14□□□□□ -0.63
VPS53-218ENST00000575207 RNF125Q96EQ8 232 aa11.14□□□□□ -0.63
VPS53-218ENST00000575207 HDHD3Q9BSH5 251 aaPredicted RBP11.14□□□□□ -0.63
VPS53-218ENST00000575207 C21orf62Q9NYP8 219 aa11.14□□□□□ -0.63
VPS53-218ENST00000575207 FAM30AQ9NZY2 134 aa11.14□□□□□ -0.63
VPS53-218ENST00000575207 CKLFQ9UBR5 152 aa11.14□□□□□ -0.63
VPS53-218ENST00000575207 CGB1A6NKQ9 187 aa11.13□□□□□ -0.63
VPS53-218ENST00000575207 CYB5BO43169 146 aa11.13□□□□□ -0.63
VPS53-218ENST00000575207 FCGR3BO75015 233 aa11.13□□□□□ -0.63
VPS53-218ENST00000575207 ZNF688P0C7X2 276 aa11.13□□□□□ -0.63
VPS53-218ENST00000575207 RELQ04864 619 aaPredicted RBP11.13□□□□□ -0.63
VPS53-218ENST00000575207 PUSL1Q8N0Z8 303 aaKnown RBP11.13□□□□□ -0.63
VPS53-218ENST00000575207 NRBF2Q96F24 287 aa11.13□□□□□ -0.63
VPS53-218ENST00000575207 VSIRQ9H7M9 311 aa11.13□□□□□ -0.63
VPS53-218ENST00000575207 TRAV8-7A0A075B6U6 113 aa11.12□□□□□ -0.63
VPS53-218ENST00000575207 IGHV3OR16-12A0A075B7B8 117 aa11.12□□□□□ -0.63
VPS53-218ENST00000575207 IGLC7A0M8Q6 106 aa11.12□□□□□ -0.63
VPS53-218ENST00000575207 CTSGP08311 255 aa11.12□□□□□ -0.63
VPS53-218ENST00000575207 CRHBPP24387 322 aa11.12□□□□□ -0.63
VPS53-218ENST00000575207 GTF2A1P52655 376 aaPredicted RBP11.12□□□□□ -0.63
VPS53-218ENST00000575207 RPL8P62917 257 aaKnown RBP11.12□□□□□ -0.63
VPS53-218ENST00000575207 Q56UQ5 140 aa11.12□□□□□ -0.63
VPS53-218ENST00000575207 LRRTM1Q86UE6 522 aa11.12□□□□□ -0.63
VPS53-218ENST00000575207 CANT1Q8WVQ1 401 aa11.12□□□□□ -0.63
VPS53-218ENST00000575207 YTHDF2Q9Y5A9 579 aaKnown RBP11.12□□□□□ -0.63
VPS53-218ENST00000575207 IGHV3-21A0A0B4J1V1 117 aa11.11□□□□□ -0.63
VPS53-218ENST00000575207 K7EQG2 157 aa11.11□□□□□ -0.63
VPS53-218ENST00000575207 RAB27BO00194 218 aa11.11□□□□□ -0.63
VPS53-218ENST00000575207 SRMP19623 302 aa11.11□□□□□ -0.63
VPS53-218ENST00000575207 HTR2CP28335 458 aa11.11□□□□□ -0.63
VPS53-218ENST00000575207 CDH26Q8IXH8 852 aa11.11□□□□□ -0.63
VPS53-218ENST00000575207 CBR4Q8N4T8 237 aa11.11□□□□□ -0.63
VPS53-218ENST00000575207 SCARB1Q8WTV0 552 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms