RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 IL15RAQ13261 267 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 KCNJ8Q15842 424 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 RNF212Q495C1 297 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 RNASE10Q5GAN6 216 aaKnown RBP2.48□□□□□ -2.01
NUP88-209ENST00000574855 FAM222AQ5U5X8 452 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 FAM19A3Q7Z5A8 133 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 VN1R4Q7Z5H5 301 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 DAZ4Q86SG3 579 aaKnown RBP2.48□□□□□ -2.01
NUP88-209ENST00000574855 ZIC4Q8N9L1 334 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 NKAPP1Q8N9T2 125 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 OR8S1Q8NH09 359 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 STAG3L4Q8TBR4 150 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 CT55Q8WUE5 264 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 THEM6Q8WUY1 208 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 CANT1Q8WVQ1 401 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 MBD3L1Q8WWY6 194 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 OR5P3Q8WZ94 311 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 POP5Q969H6 163 aaKnown RBP2.48□□□□□ -2.01
NUP88-209ENST00000574855 NEURL3Q96EH8 262 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 LYSMD1Q96S90 227 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 ZNF184Q99676 751 aaPredicted RBP2.48□□□□□ -2.01
NUP88-209ENST00000574855 CHCHD5Q9BSY4 110 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 DOHHQ9BU89 302 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 SFXN3Q9BWM7 321 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 OCR1Q9BZK8 76 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 C20orf27Q9GZN8 174 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 OR52D1Q9H346 318 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 DAZ1Q9NQZ3 744 aaKnown RBP2.48□□□□□ -2.01
NUP88-209ENST00000574855 DAZ3Q9NR90 486 aaKnown RBP2.48□□□□□ -2.01
NUP88-209ENST00000574855 PRTFDC1Q9NRG1 225 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 SPANXCQ9NY87 97 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 CALML5Q9NZT1 146 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 LRRC37A2A6NM11 1700 aa2.48□□□□□ -2.01
NUP88-209ENST00000574855 CITO14578 2027 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 PLXNB2O15031 1838 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 OTOFQ9HC10 1997 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 IGKV1-27A0A075B6S5 117 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 TRAV36DV7A0A075B6V5 113 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 MEIKINA0A087WXM9 373 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 IGHV6-1A0A0B4J1U7 121 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 CXorf51AA0A1B0GTR3 108 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 LOC389332A0A1B0GUA5 103 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 C5orf63A6NC05 138 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 EPOPA6NHQ4 379 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 KNCNA6PVL3 124 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 SRRM5B3KS81 715 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.47□□□□□ -2.01
NUP88-209ENST00000574855 J3KT08 172 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 K7ERU9 68 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 UPK1AO00322 258 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 SNAP91O60641 907 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 ZNF780AO75290 641 aaPredicted RBP2.47□□□□□ -2.01
NUP88-209ENST00000574855 TNFSF15O95150 251 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 CDS2O95674 445 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 IGLV3-27P01718 113 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 CRYBA1P05813 215 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 OR4Q2P0C623 313 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 METTL15P1P0C7V9 234 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 CECR9P0C854 216 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 IL1RNP18510 177 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 GADD45AP24522 165 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 APLNRP35414 380 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 LHX2P50458 406 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 WNT4P56705 351 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 MAXP61244 160 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 RELAQ04206 551 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 MEF2CQ06413 473 aaPredicted RBP2.47□□□□□ -2.01
NUP88-209ENST00000574855 BTN1A1Q13410 526 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 ARFRP1Q13795 201 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 C16orf72Q14CZ0 275 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 RBMY1FQ15415 496 aaKnown RBP2.47□□□□□ -2.01
NUP88-209ENST00000574855 NEDD8Q15843 81 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 LTC4SQ16873 150 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 C12orf74Q32Q52 190 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 FBXL19-AS1Q494R0 122 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 ZNF404Q494X3 552 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 CLLU1OSQ5K130 101 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 ZNF678Q5SXM1 525 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 FAM182AQ5T1J6 154 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 LCE3EQ5T5B0 92 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 HAGHLQ6PII5 290 aaPredicted RBP2.47□□□□□ -2.01
NUP88-209ENST00000574855 FBXW12Q6X9E4 464 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 Q6ZRU5 148 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 RFLNAQ6ZTI6 216 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 ATP5L2Q7Z4Y8 100 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 ARPINQ7Z6K5 226 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 PRNTQ86SH4 94 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 SLC25A42Q86VD7 318 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 ZNF584Q8IVC4 421 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 C11orf53Q8IXP5 236 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 TMEM61Q8N0U2 210 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 EXOC3-AS1Q8N2X6 119 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 SLC25A45Q8N413 288 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 ZNF615Q8N8J6 731 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 GDPD1Q8N9F7 314 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 SLC30A7Q8NEW0 376 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 RXFP4Q8TDU9 374 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 PLEKHB2Q96CS7 222 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 TMEM101Q96IK0 257 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 SLC35E1Q96K37 410 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms