RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 RGS5O15539 181 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 TPPPO94811 219 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 LY86O95711 162 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 RLN1P04808 185 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 IFNA6P05013 189 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 HLA-GP17693 338 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 GNRHRP30968 328 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 ALDH3B2P48448 385 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 RPL8P62917 257 aaKnown RBP6.25□□□□□ -1.41
VPS53-214ENST00000572607 ATP5G2Q06055 141 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 FAM209BQ5JX69 171 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 ASPHD1Q5U4P2 390 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 OR4A47Q6IF82 309 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 DHRS11Q6UWP2 260 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 FAM223AQ8IWN6 122 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 PUSL1Q8N0Z8 303 aaKnown RBP6.25□□□□□ -1.41
VPS53-214ENST00000572607 ADAD2Q8NCV1 583 aaKnown RBP6.25□□□□□ -1.41
VPS53-214ENST00000572607 DMBX1Q8NFW5 382 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 OR6Q1Q8NGQ2 317 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 RAB2BQ8WUD1 216 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 DLX4Q92988 240 aaPredicted RBP6.25□□□□□ -1.41
VPS53-214ENST00000572607 GPHA2Q96T91 129 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 COMMD5Q9GZQ3 224 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 BET1LQ9NYM9 111 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 COMMD9Q9P000 198 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 PEF1Q9UBV8 284 aaKnown RBP6.25□□□□□ -1.41
VPS53-214ENST00000572607 ZNF256Q9Y2P7 627 aaPredicted RBP6.25□□□□□ -1.41
VPS53-214ENST00000572607 ZNF257Q9Y2Q1 563 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 DNAH7Q8WXX0 4024 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 TENM3Q9P273 2699 aa6.24□□□□□ -1.41
VPS53-214ENST00000572607 CYB5BO43169 146 aa6.24□□□□□ -1.41
VPS53-214ENST00000572607 DEFA4P12838 97 aa6.24□□□□□ -1.41
VPS53-214ENST00000572607 F2RP25116 425 aa6.24□□□□□ -1.41
VPS53-214ENST00000572607 RHOGP84095 191 aa6.24□□□□□ -1.41
VPS53-214ENST00000572607 CD69Q07108 199 aa6.24□□□□□ -1.41
VPS53-214ENST00000572607 EXOSC2Q13868 293 aaKnown RBP6.24□□□□□ -1.41
VPS53-214ENST00000572607 ZNF124Q15973 351 aa6.24□□□□□ -1.41
VPS53-214ENST00000572607 MRGPRG-AS1Q2M3A8 158 aa6.24□□□□□ -1.41
VPS53-214ENST00000572607 RNASE12Q5GAN4 147 aaKnown RBP6.24□□□□□ -1.41
VPS53-214ENST00000572607 RNASE10Q5GAN6 216 aaKnown RBP6.24□□□□□ -1.41
VPS53-214ENST00000572607 C10orf55Q5SWW7 151 aa6.24□□□□□ -1.41
VPS53-214ENST00000572607 TTC9CQ8N5M4 171 aa6.24□□□□□ -1.41
VPS53-214ENST00000572607 BCL7BQ9BQE9 202 aa6.24□□□□□ -1.41
VPS53-214ENST00000572607 RSRP1Q9BUV0 290 aa6.24□□□□□ -1.41
VPS53-214ENST00000572607 FXYD6Q9H0Q3 95 aa6.24□□□□□ -1.41
VPS53-214ENST00000572607 PLEKHA2Q9HB19 425 aa6.24□□□□□ -1.41
VPS53-214ENST00000572607 SLC2A9Q9NRM0 540 aa6.24□□□□□ -1.41
VPS53-214ENST00000572607 TMEM140Q9NV12 185 aa6.24□□□□□ -1.41
VPS53-214ENST00000572607 HMX3A6NHT5 357 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 NPIPB5A8MRT5 1133 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 UPK2O00526 184 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 PGLYRP1O75594 196 aaPredicted RBP6.23□□□□□ -1.41
VPS53-214ENST00000572607 SNAPC5O75971 98 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 OR2J3O76001 311 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 S1PR2O95136 353 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 HIST1H1BP16401 226 aaKnown RBP6.23□□□□□ -1.41
VPS53-214ENST00000572607 TBPP20226 339 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 PSMB6P28072 239 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 RPL5P46777 297 aaKnown RBP6.23□□□□□ -1.41
VPS53-214ENST00000572607 TMBIM6P55061 237 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 BRWD1-AS2P59051 145 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 MRPS10P82664 201 aaKnown RBP6.23□□□□□ -1.41
VPS53-214ENST00000572607 DEFA5Q01523 94 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 POU2AF1Q16633 256 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 RPEL1Q2QD12 228 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 PHLDA2Q53GA4 152 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 VAX1Q5SQQ9 334 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 LCE4AQ5TA78 99 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 THOC7Q6I9Y2 204 aaKnown RBP6.23□□□□□ -1.41
VPS53-214ENST00000572607 ZNF343Q6P1L6 599 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 ACSM6Q6P461 480 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 LYSMD2Q8IV50 215 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 SLC38A6Q8IZM9 456 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 NECAP1Q8NC96 275 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 FCAMRQ8WWV6 532 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 DGCR14Q96DF8 476 aaKnown RBP6.23□□□□□ -1.41
VPS53-214ENST00000572607 PRR25Q96S07 402 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 AKIP1Q9NQ31 210 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 THYN1Q9P016 225 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 RABL2AQ9UBK7 228 aaPredicted RBP6.23□□□□□ -1.41
VPS53-214ENST00000572607 PEMTQ9UBM1 199 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 SCOCQ9UIL1 159 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 RABL2BQ9UNT1 228 aa6.23□□□□□ -1.41
VPS53-214ENST00000572607 TRBV9A0A0B4J1U6 114 aa6.22□□□□□ -1.41
VPS53-214ENST00000572607 MARCH11A6NNE9 402 aa6.22□□□□□ -1.41
VPS53-214ENST00000572607 TEX22C9J3V5 150 aa6.22□□□□□ -1.41
VPS53-214ENST00000572607 M0QYG6 137 aa6.22□□□□□ -1.41
VPS53-214ENST00000572607 PRH1P02810 166 aa6.22□□□□□ -1.41
VPS53-214ENST00000572607 IL6RP08887 468 aaPredicted RBP6.22□□□□□ -1.41
VPS53-214ENST00000572607 FGF2P09038 288 aa6.22□□□□□ -1.41
VPS53-214ENST00000572607 ZNF735P0CB33 412 aa6.22□□□□□ -1.41
VPS53-214ENST00000572607 PGAM2P15259 253 aa6.22□□□□□ -1.41
VPS53-214ENST00000572607 RPA2P15927 270 aa6.22□□□□□ -1.41
VPS53-214ENST00000572607 LPAR6P43657 344 aa6.22□□□□□ -1.41
VPS53-214ENST00000572607 UCP3P55916 312 aa6.22□□□□□ -1.41
VPS53-214ENST00000572607 TAS2R19P59542 299 aa6.22□□□□□ -1.41
VPS53-214ENST00000572607 IL18Q14116 193 aa6.22□□□□□ -1.41
VPS53-214ENST00000572607 SPCS2Q15005 226 aa6.22□□□□□ -1.41
VPS53-214ENST00000572607 C15orf32Q32M92 178 aa6.22□□□□□ -1.41
VPS53-214ENST00000572607 HSD17B13Q7Z5P4 300 aaPredicted RBP6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms