RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 REG1AP05451 166 aa12.89□□□□□ -0.35
CLK3-227ENST00000570296 PAFAH1B2P68402 229 aa12.89□□□□□ -0.35
CLK3-227ENST00000570296 Q5VSD8 79 aa12.89□□□□□ -0.35
CLK3-227ENST00000570296 CBR4Q8N4T8 237 aa12.89□□□□□ -0.35
CLK3-227ENST00000570296 OR52I1Q8NGK6 324 aa12.89□□□□□ -0.35
CLK3-227ENST00000570296 TMEM167AQ8TBQ9 72 aa12.89□□□□□ -0.35
CLK3-227ENST00000570296 GGHQ92820 318 aa12.89□□□□□ -0.35
CLK3-227ENST00000570296 DCUN1D5Q9BTE7 237 aa12.89□□□□□ -0.35
CLK3-227ENST00000570296 RHPN1-AS1Q9BWJ2 59 aa12.89□□□□□ -0.35
CLK3-227ENST00000570296 VCXQ9H320 206 aa12.89□□□□□ -0.35
CLK3-227ENST00000570296 C8orf4Q9NR00 106 aa12.89□□□□□ -0.35
CLK3-227ENST00000570296 TMEM14BQ9NUH8 114 aa12.89□□□□□ -0.35
CLK3-227ENST00000570296 AASSQ9UDR5 926 aa12.89□□□□□ -0.35
CLK3-227ENST00000570296 IGKV3-7A0A075B6H7 116 aa12.88□□□□□ -0.35
CLK3-227ENST00000570296 IGHV3OR16-8A0A075B7F1 116 aa12.88□□□□□ -0.35
CLK3-227ENST00000570296 IGHV7-4-1A0A0J9YVY3 117 aa12.88□□□□□ -0.35
CLK3-227ENST00000570296 A0A1W2PPK0 400 aa12.88□□□□□ -0.35
CLK3-227ENST00000570296 LEMD1Q68G75 181 aa12.88□□□□□ -0.35
CLK3-227ENST00000570296 GBGT1Q8N5D6 347 aa12.88□□□□□ -0.35
CLK3-227ENST00000570296 GIMAP1Q8WWP7 306 aa12.88□□□□□ -0.35
CLK3-227ENST00000570296 ATP6V0BQ99437 205 aa12.88□□□□□ -0.35
CLK3-227ENST00000570296 RRP15Q9Y3B9 282 aaKnown RBP12.88□□□□□ -0.35
CLK3-227ENST00000570296 NBDYA0A0U1RRE5 68 aa12.87□□□□□ -0.35
CLK3-227ENST00000570296 BET1O15155 118 aa12.87□□□□□ -0.35
CLK3-227ENST00000570296 DIRAS3O95661 229 aa12.87□□□□□ -0.35
CLK3-227ENST00000570296 CELP19835 753 aa12.87□□□□□ -0.35
CLK3-227ENST00000570296 DEFB131AP59861 70 aa12.87□□□□□ -0.35
CLK3-227ENST00000570296 FAM90A2PQ658T7 463 aa12.87□□□□□ -0.35
CLK3-227ENST00000570296 TMPRSS11AQ6ZMR5 421 aa12.87□□□□□ -0.35
CLK3-227ENST00000570296 TRPT1Q86TN4 253 aaKnown RBP12.87□□□□□ -0.35
CLK3-227ENST00000570296 VKORC1L1Q8N0U8 176 aa12.87□□□□□ -0.35
CLK3-227ENST00000570296 PUSL1Q8N0Z8 303 aaKnown RBP12.87□□□□□ -0.35
CLK3-227ENST00000570296 TMEM116Q8NCL8 245 aa12.87□□□□□ -0.35
CLK3-227ENST00000570296 OR10J5Q8NHC4 309 aa12.87□□□□□ -0.35
CLK3-227ENST00000570296 FRZBQ92765 325 aa12.87□□□□□ -0.35
CLK3-227ENST00000570296 CABLES2Q9BTV7 478 aa12.87□□□□□ -0.35
CLK3-227ENST00000570296 AMBNQ9NP70 447 aa12.87□□□□□ -0.35
CLK3-227ENST00000570296 MRPS18AQ9NVS2 196 aaKnown RBP12.87□□□□□ -0.35
CLK3-227ENST00000570296 RBM7Q9Y580 266 aaKnown RBP12.87□□□□□ -0.35
CLK3-227ENST00000570296 TRBV6-7A0A0A0MS04 114 aa12.86□□□□□ -0.35
CLK3-227ENST00000570296 J3QL48 77 aa12.86□□□□□ -0.35
CLK3-227ENST00000570296 FCGR3BO75015 233 aa12.86□□□□□ -0.35
CLK3-227ENST00000570296 ALPLP05186 524 aa12.86□□□□□ -0.35
CLK3-227ENST00000570296 CD5P06127 495 aa12.86□□□□□ -0.35
CLK3-227ENST00000570296 CD3GP09693 182 aa12.86□□□□□ -0.35
CLK3-227ENST00000570296 GABRB1P18505 474 aa12.86□□□□□ -0.35
CLK3-227ENST00000570296 C4BPBP20851 252 aa12.86□□□□□ -0.35
CLK3-227ENST00000570296 UNC119Q13432 240 aa12.86□□□□□ -0.35
CLK3-227ENST00000570296 LYPD1Q8N2G4 141 aa12.86□□□□□ -0.35
CLK3-227ENST00000570296 CSNK1G2-AS1Q8NCQ2 148 aa12.86□□□□□ -0.35
CLK3-227ENST00000570296 VCX3BQ9H321 246 aa12.86□□□□□ -0.35
CLK3-227ENST00000570296 BABAM2Q9NXR7 383 aa12.86□□□□□ -0.35
CLK3-227ENST00000570296 HSF4Q9ULV5 492 aa12.86□□□□□ -0.35
CLK3-227ENST00000570296 MRPS7Q9Y2R9 242 aaKnown RBP12.86□□□□□ -0.35
CLK3-227ENST00000570296 A0A0A6YYD4 124 aa12.85□□□□□ -0.35
CLK3-227ENST00000570296 F8W735 103 aaPredicted RBP12.85□□□□□ -0.35
CLK3-227ENST00000570296 FABP7O15540 132 aa12.85□□□□□ -0.35
CLK3-227ENST00000570296 KRTAP10-2P60368 255 aa12.85□□□□□ -0.35
CLK3-227ENST00000570296 TTC23Q5W5X9 447 aa12.85□□□□□ -0.35
CLK3-227ENST00000570296 ZNF66Q6ZN08 573 aa12.85□□□□□ -0.35
CLK3-227ENST00000570296 PACRGLQ8N7B6 248 aa12.85□□□□□ -0.35
CLK3-227ENST00000570296 PGLYRP3Q96LB9 341 aa12.85□□□□□ -0.35
CLK3-227ENST00000570296 Q96MT0 163 aa12.85□□□□□ -0.35
CLK3-227ENST00000570296 DERL3Q96Q80 235 aa12.85□□□□□ -0.35
CLK3-227ENST00000570296 PRELID3BQ9Y3B1 194 aa12.85□□□□□ -0.35
CLK3-227ENST00000570296 TMED3Q9Y3Q3 217 aa12.85□□□□□ -0.35
CLK3-227ENST00000570296 CASQ2O14958 399 aaPredicted RBP12.84□□□□□ -0.35
CLK3-227ENST00000570296 CYB5BO43169 146 aa12.84□□□□□ -0.35
CLK3-227ENST00000570296 RPL8P62917 257 aaKnown RBP12.84□□□□□ -0.35
CLK3-227ENST00000570296 SSX1Q16384 188 aa12.84□□□□□ -0.35
CLK3-227ENST00000570296 ZIK1Q3SY52 487 aaPredicted RBP12.84□□□□□ -0.35
CLK3-227ENST00000570296 IGSF11Q5DX21 431 aa12.84□□□□□ -0.35
CLK3-227ENST00000570296 CMSS1Q9BQ75 279 aaKnown RBP12.84□□□□□ -0.35
CLK3-227ENST00000570296 YTHDF1Q9BYJ9 559 aaKnown RBP12.84□□□□□ -0.35
CLK3-227ENST00000570296 TRAV2A0A0B4J234 112 aa12.83□□□□□ -0.36
CLK3-227ENST00000570296 CGB1A6NKQ9 187 aa12.83□□□□□ -0.36
CLK3-227ENST00000570296 SOCS1O15524 211 aa12.83□□□□□ -0.36
CLK3-227ENST00000570296 ATP6V1G2O95670 118 aa12.83□□□□□ -0.36
CLK3-227ENST00000570296 ETV1P50549 477 aa12.83□□□□□ -0.36
CLK3-227ENST00000570296 OGFRL1Q5TC84 451 aaPredicted RBP12.83□□□□□ -0.36
CLK3-227ENST00000570296 KCTD9Q7L273 389 aa12.83□□□□□ -0.36
CLK3-227ENST00000570296 ZNF555Q8NEP9 628 aa12.83□□□□□ -0.36
CLK3-227ENST00000570296 FGF20Q9NP95 211 aaPredicted RBP12.83□□□□□ -0.36
CLK3-227ENST00000570296 CLEC5AQ9NY25 188 aa12.83□□□□□ -0.36
CLK3-227ENST00000570296 TMEM14DPA8MWL7 114 aa12.82□□□□□ -0.36
CLK3-227ENST00000570296 LALBAP00709 142 aa12.82□□□□□ -0.36
CLK3-227ENST00000570296 SPART-AS1P0CW21 52 aa12.82□□□□□ -0.36
CLK3-227ENST00000570296 HLA-GP17693 338 aa12.82□□□□□ -0.36
CLK3-227ENST00000570296 CRHBPP24387 322 aa12.82□□□□□ -0.36
CLK3-227ENST00000570296 QRFPP83859 136 aa12.82□□□□□ -0.36
CLK3-227ENST00000570296 PLA2G7Q13093 441 aa12.82□□□□□ -0.36
CLK3-227ENST00000570296 C1orf100Q5SVJ3 147 aa12.82□□□□□ -0.36
CLK3-227ENST00000570296 TCF24Q7RTU0 167 aa12.82□□□□□ -0.36
CLK3-227ENST00000570296 OR4S2Q8NH73 311 aa12.82□□□□□ -0.36
CLK3-227ENST00000570296 OR10C1Q96KK4 312 aa12.82□□□□□ -0.36
CLK3-227ENST00000570296 LPAR5Q9H1C0 372 aa12.82□□□□□ -0.36
CLK3-227ENST00000570296 MS4A6AQ9H2W1 248 aa12.82□□□□□ -0.36
CLK3-227ENST00000570296 IGHV3-49A0A0A0MS15 119 aa12.81□□□□□ -0.36
CLK3-227ENST00000570296 IGLC7A0M8Q6 106 aa12.81□□□□□ -0.36
CLK3-227ENST00000570296 DNASE2O00115 360 aaPredicted RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms