RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 TMEM14EPQ6UXP3 125 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 DPPA3Q6W0C5 159 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 MMD2Q8IY49 270 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 ZNF525Q8N782 197 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 OR1L8Q8NGR8 309 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 CLDND2Q8NHS1 167 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 MALSU1Q96EH3 234 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 HARBI1Q96MB7 349 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 ATP5SQ99766 215 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 SRSF8Q9BRL6 282 aaKnown RBP6.47□□□□□ -1.37
VPS39-213ENST00000570062 GINS3Q9BRX5 216 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 COMMD5Q9GZQ3 224 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 MAGT1Q9H0U3 335 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 RBKSQ9H477 322 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 HEYLQ9NQ87 328 aaPredicted RBP6.47□□□□□ -1.37
VPS39-213ENST00000570062 KCNIP2Q9NS61 270 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 TMEM14BQ9NUH8 114 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 POLQO75417 2590 aa6.47□□□□□ -1.37
VPS39-213ENST00000570062 LRRK2Q5S007 2527 aa6.46□□□□□ -1.37
VPS39-213ENST00000570062 ZFHX3Q15911 3703 aa6.46□□□□□ -1.37
VPS39-213ENST00000570062 IGHV1-3A0A0C4DH29 117 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 VWC2LB2RUY7 222 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 B4DSR2 109 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 LY6LH3BQJ8 138 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 TOX4O94842 621 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 MBP02144 154 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 BRS3P32247 399 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 RPL8P62917 257 aaKnown RBP6.46□□□□□ -1.38
VPS39-213ENST00000570062 SERF2P84101 59 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 PRCDQ00LT1 54 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 NHLH2Q02577 135 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 SPANXN5Q5MJ07 72 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 RPL7L1Q6DKI1 246 aaKnown RBP6.46□□□□□ -1.38
VPS39-213ENST00000570062 PRSS57Q6UWY2 283 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 ALKAL2Q6UX46 152 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 MOB3BQ86TA1 216 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 LILRB2Q8N423 598 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 PNKDQ8N490 385 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 COMMD1Q8N668 190 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 Q8N7P7 452 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 OR4P4Q8NGL7 312 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 OR1L6Q8NGR2 347 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 OR5C1Q8NGR4 320 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 MBD6Q96DN6 1003 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 MRPL20Q9BYC9 149 aaKnown RBP6.46□□□□□ -1.38
VPS39-213ENST00000570062 PLEKHA3Q9HB20 300 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 C1RLQ9NZP8 487 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 OR51B2Q9Y5P1 312 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 TANC2Q9HCD6 1990 aa6.46□□□□□ -1.38
VPS39-213ENST00000570062 CHD3Q12873 2000 aaKnown RBP6.45□□□□□ -1.38
VPS39-213ENST00000570062 SETD2Q9BYW2 2564 aaPredicted RBP6.45□□□□□ -1.38
VPS39-213ENST00000570062 TRAV20A0A0B4J274 112 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 IGSF23A1L1A6 192 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 ODF3BA8MYP8 253 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 C17orf112F2Z3M2 114 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 J3QLI3 93 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 CYB5BO43169 146 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 NDUFS7O75251 213 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 CFDP00746 253 aaPredicted RBP6.45□□□□□ -1.38
VPS39-213ENST00000570062 IFNA10P01566 189 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 SNRNP70P08621 437 aaKnown RBP6.45□□□□□ -1.38
VPS39-213ENST00000570062 OR9G9P0C7N8 305 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 FAM106CPP0CH98 169 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 SPP1P10451 314 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 COX7A1P24310 79 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 SNCAP37840 140 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 HOXA1P49639 335 aaPredicted RBP6.45□□□□□ -1.38
VPS39-213ENST00000570062 SULT1A2P50226 295 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 DYNLT3P51808 116 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 OR2B8PP59922 312 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 PAX2Q02962 417 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 RAB31Q13636 194 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 HABP2Q14520 560 aaPredicted RBP6.45□□□□□ -1.38
VPS39-213ENST00000570062 SSX9Q7RTT3 188 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 VMO1Q7Z5L0 202 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 THNSL2Q86YJ6 484 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 EIF4E3Q8N5X7 224 aaKnown RBP6.45□□□□□ -1.38
VPS39-213ENST00000570062 TEX29Q8N6K0 151 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 ZNF709Q8N972 641 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 OR2T10Q8NGZ9 312 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 C1orf159Q96HA4 380 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 PSMG3Q9BT73 122 aaPredicted RBP6.45□□□□□ -1.38
VPS39-213ENST00000570062 TMEM147Q9BVK8 224 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 QTRT1Q9BXR0 403 aaKnown RBP6.45□□□□□ -1.38
VPS39-213ENST00000570062 SIRPDQ9H106 197 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 PARP11Q9NR21 331 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 UQCC1Q9NVA1 299 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 KIAA1456Q9P272 454 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 TCF19Q9Y242 345 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 FBXO7Q9Y3I1 522 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 TIMM9Q9Y5J7 89 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 DNHD1Q96M86 4753 aa6.45□□□□□ -1.38
VPS39-213ENST00000570062 DIDO1Q9BTC0 2240 aaKnown RBP6.44□□□□□ -1.38
VPS39-213ENST00000570062 BTBD17A6NE02 478 aa6.44□□□□□ -1.38
VPS39-213ENST00000570062 CORTO00230 105 aa6.44□□□□□ -1.38
VPS39-213ENST00000570062 FGF16O43320 207 aa6.44□□□□□ -1.38
VPS39-213ENST00000570062 ATP6V1G1O75348 118 aa6.44□□□□□ -1.38
VPS39-213ENST00000570062 CST7O76096 145 aa6.44□□□□□ -1.38
VPS39-213ENST00000570062 TMEM50AO95807 157 aa6.44□□□□□ -1.38
VPS39-213ENST00000570062 MOSP00540 346 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms