RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 OR4D10Q8NGI6 311 aa11.54□□□□□ -0.56
VPS39-210ENST00000568357 C15orf40Q8WUR7 153 aa11.54□□□□□ -0.56
VPS39-210ENST00000568357 ISOC1Q96CN7 298 aa11.54□□□□□ -0.56
VPS39-210ENST00000568357 SLIRPQ9GZT3 109 aaKnown RBP11.54□□□□□ -0.56
VPS39-210ENST00000568357 TMEM140Q9NV12 185 aa11.54□□□□□ -0.56
VPS39-210ENST00000568357 PEF1Q9UBV8 284 aaKnown RBP11.54□□□□□ -0.56
VPS39-210ENST00000568357 COL7A1Q02388 2944 aa11.53□□□□□ -0.56
VPS39-210ENST00000568357 NPIPB5A8MRT5 1133 aa11.53□□□□□ -0.56
VPS39-210ENST00000568357 INSL3P51460 131 aa11.53□□□□□ -0.56
VPS39-210ENST00000568357 OR2B8PP59922 312 aa11.53□□□□□ -0.56
VPS39-210ENST00000568357 ATP5G2Q06055 141 aa11.53□□□□□ -0.56
VPS39-210ENST00000568357 RNASE10Q5GAN6 216 aaKnown RBP11.53□□□□□ -0.56
VPS39-210ENST00000568357 ACSM6Q6P461 480 aa11.53□□□□□ -0.56
VPS39-210ENST00000568357 ZNF429Q86V71 674 aa11.53□□□□□ -0.56
VPS39-210ENST00000568357 DIRAS2Q96HU8 199 aa11.53□□□□□ -0.56
VPS39-210ENST00000568357 COMMD9Q9P000 198 aa11.53□□□□□ -0.56
VPS39-210ENST00000568357 ZMAT5Q9UDW3 170 aaKnown RBP11.53□□□□□ -0.56
VPS39-210ENST00000568357 ZNF257Q9Y2Q1 563 aa11.53□□□□□ -0.56
VPS39-210ENST00000568357 FAM223BA6NKX1 122 aa11.52□□□□□ -0.57
VPS39-210ENST00000568357 MARCH11A6NNE9 402 aa11.52□□□□□ -0.57
VPS39-210ENST00000568357 GABARAPH6UMI1 98 aa11.52□□□□□ -0.57
VPS39-210ENST00000568357 SAP30O75446 220 aa11.52□□□□□ -0.57
VPS39-210ENST00000568357 OR2J3O76001 311 aa11.52□□□□□ -0.57
VPS39-210ENST00000568357 KRASP01116 189 aa11.52□□□□□ -0.57
VPS39-210ENST00000568357 CD74P04233 296 aa11.52□□□□□ -0.57
VPS39-210ENST00000568357 IFNA6P05013 189 aa11.52□□□□□ -0.57
VPS39-210ENST00000568357 CRYGCP07315 174 aa11.52□□□□□ -0.57
VPS39-210ENST00000568357 PSMB6P28072 239 aa11.52□□□□□ -0.57
VPS39-210ENST00000568357 KLF5Q13887 457 aaPredicted RBP11.52□□□□□ -0.57
VPS39-210ENST00000568357 TBC1D26Q86UD7 250 aa11.52□□□□□ -0.57
VPS39-210ENST00000568357 SLC25A42Q86VD7 318 aa11.52□□□□□ -0.57
VPS39-210ENST00000568357 LHFPL1Q86WI0 220 aa11.52□□□□□ -0.57
VPS39-210ENST00000568357 FAM223AQ8IWN6 122 aa11.52□□□□□ -0.57
VPS39-210ENST00000568357 SLC38A6Q8IZM9 456 aa11.52□□□□□ -0.57
VPS39-210ENST00000568357 TMEM229BQ8NBD8 167 aa11.52□□□□□ -0.57
VPS39-210ENST00000568357 NECAP1Q8NC96 275 aa11.52□□□□□ -0.57
VPS39-210ENST00000568357 FANCD2OSQ96PS1 177 aa11.52□□□□□ -0.57
VPS39-210ENST00000568357 PRR25Q96S07 402 aa11.52□□□□□ -0.57
VPS39-210ENST00000568357 TENM3Q9P273 2699 aa11.51□□□□□ -0.57
VPS39-210ENST00000568357 DPPA5A6NC42 116 aa11.51□□□□□ -0.57
VPS39-210ENST00000568357 NOL3O60936 208 aaKnown RBP11.51□□□□□ -0.57
VPS39-210ENST00000568357 REG1AP05451 166 aa11.51□□□□□ -0.57
VPS39-210ENST00000568357 CTRB1P17538 263 aa11.51□□□□□ -0.57
VPS39-210ENST00000568357 PI3P19957 117 aa11.51□□□□□ -0.57
VPS39-210ENST00000568357 TBPP20226 339 aa11.51□□□□□ -0.57
VPS39-210ENST00000568357 ZP3P21754 424 aa11.51□□□□□ -0.57
VPS39-210ENST00000568357 G6PCP35575 357 aa11.51□□□□□ -0.57
VPS39-210ENST00000568357 C15orf32Q32M92 178 aa11.51□□□□□ -0.57
VPS39-210ENST00000568357 CTRB2Q6GPI1 263 aa11.51□□□□□ -0.57
VPS39-210ENST00000568357 ARRDC1Q8N5I2 433 aa11.51□□□□□ -0.57
VPS39-210ENST00000568357 COMMD5Q9GZQ3 224 aa11.51□□□□□ -0.57
VPS39-210ENST00000568357 C6orf62Q9GZU0 229 aaPredicted RBP11.51□□□□□ -0.57
VPS39-210ENST00000568357 DYNC2H1Q8NCM8 4307 aaKnown RBP11.51□□□□□ -0.57
VPS39-210ENST00000568357 TEX50A0A1B0GTY4 177 aa11.5□□□□□ -0.57
VPS39-210ENST00000568357 IGLC7A0M8Q6 106 aa11.5□□□□□ -0.57
VPS39-210ENST00000568357 NDUFB8O95169 186 aa11.5□□□□□ -0.57
VPS39-210ENST00000568357 IGKV1-39P01597 117 aa11.5□□□□□ -0.57
VPS39-210ENST00000568357 IGKV1D-39P04432 117 aa11.5□□□□□ -0.57
VPS39-210ENST00000568357 FGF2P09038 288 aa11.5□□□□□ -0.57
VPS39-210ENST00000568357 TNFSF8P32971 234 aa11.5□□□□□ -0.57
VPS39-210ENST00000568357 TAS2R19P59542 299 aa11.5□□□□□ -0.57
VPS39-210ENST00000568357 ERVK-16P61578 105 aa11.5□□□□□ -0.57
VPS39-210ENST00000568357 EXOSC2Q13868 293 aaKnown RBP11.5□□□□□ -0.57
VPS39-210ENST00000568357 IL18Q14116 193 aa11.5□□□□□ -0.57
VPS39-210ENST00000568357 KLK9Q2XQG4 91 aa11.5□□□□□ -0.57
VPS39-210ENST00000568357 STEAP1BQ6NZ63 245 aa11.5□□□□□ -0.57
VPS39-210ENST00000568357 IL34Q6ZMJ4 242 aa11.5□□□□□ -0.57
VPS39-210ENST00000568357 CADM3Q8N126 398 aa11.5□□□□□ -0.57
VPS39-210ENST00000568357 OR10W1Q8NGF6 305 aa11.5□□□□□ -0.57
VPS39-210ENST00000568357 SMIM4Q8WVI0 70 aa11.5□□□□□ -0.57
VPS39-210ENST00000568357 SOSTQ9BQB4 213 aa11.5□□□□□ -0.57
VPS39-210ENST00000568357 NXF2Q9GZY0 626 aaKnown RBP11.5□□□□□ -0.57
VPS39-210ENST00000568357 FBXL7Q9UJT9 491 aa11.5□□□□□ -0.57
VPS39-210ENST00000568357 KLK9Q9UKQ9 250 aa11.5□□□□□ -0.57
VPS39-210ENST00000568357 ZNF256Q9Y2P7 627 aaPredicted RBP11.5□□□□□ -0.57
VPS39-210ENST00000568357 NSG2Q9Y328 171 aa11.5□□□□□ -0.57
VPS39-210ENST00000568357 LSM4Q9Y4Z0 139 aaKnown RBP11.5□□□□□ -0.57
VPS39-210ENST00000568357 DMRT1Q9Y5R6 373 aa11.5□□□□□ -0.57
VPS39-210ENST00000568357 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.49□□□□□ -0.57
VPS39-210ENST00000568357 CTDSPLO15194 276 aa11.49□□□□□ -0.57
VPS39-210ENST00000568357 RAB3DO95716 219 aa11.49□□□□□ -0.57
VPS39-210ENST00000568357 S100GP29377 79 aa11.49□□□□□ -0.57
VPS39-210ENST00000568357 SYNJ2BPP57105 145 aa11.49□□□□□ -0.57
VPS39-210ENST00000568357 MRPS10P82664 201 aaKnown RBP11.49□□□□□ -0.57
VPS39-210ENST00000568357 SSBP1Q04837 148 aaKnown RBP11.49□□□□□ -0.57
VPS39-210ENST00000568357 FAAP20Q6NZ36 180 aa11.49□□□□□ -0.57
VPS39-210ENST00000568357 TERB2Q8NHR7 220 aa11.49□□□□□ -0.57
VPS39-210ENST00000568357 MCFD2Q8NI22 146 aa11.49□□□□□ -0.57
VPS39-210ENST00000568357 MRGPRFQ96AM1 343 aa11.49□□□□□ -0.57
VPS39-210ENST00000568357 OR4C12Q96R67 309 aa11.49□□□□□ -0.57
VPS39-210ENST00000568357 FAM212BQ9NTI7 297 aaPredicted RBP11.49□□□□□ -0.57
VPS39-210ENST00000568357 S4R3C0 116 aa11.49□□□□□ -0.57
VPS39-210ENST00000568357 DBX1A6NMT0 343 aa11.48□□□□□ -0.57
VPS39-210ENST00000568357 BMPR1BO00238 502 aa11.48□□□□□ -0.57
VPS39-210ENST00000568357 IGHV3-23P01764 117 aa11.48□□□□□ -0.57
VPS39-210ENST00000568357 TRAPPC2P0DI81 140 aa11.48□□□□□ -0.57
VPS39-210ENST00000568357 TRAPPC2BP0DI82 140 aa11.48□□□□□ -0.57
VPS39-210ENST00000568357 PGAM2P15259 253 aa11.48□□□□□ -0.57
VPS39-210ENST00000568357 SPNP16150 400 aa11.48□□□□□ -0.57
VPS39-210ENST00000568357 PTBP1P26599 531 aaKnown RBP eCLIP11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms