RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 LRRC30A6NM36 301 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 UMAD1C9J7I0 102 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 FAM90A26D6RGX4 464 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 ATP6V1G2-DDX39BF2Z307 99 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 K7N7A8 449 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 PAGE4O60829 102 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 DFFBO76075 338 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 IFNA5P01569 189 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 APOC3P02656 99 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 PRH1P02810 166 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 ARL3P36405 182 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 GLIPR1P48060 266 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 CAMLGP49069 296 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 F2RL1P55085 397 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 TAS2R30P59541 319 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 TMEM30BQ3MIR4 351 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 HIST2H2BDQ6DRA6 164 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 BTNL8Q6UX41 500 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 ZNF561Q8N587 486 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 TMEM252Q8N6L7 170 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 UBALD1Q8TB05 177 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 LINC01560Q8TB33 94 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 SCGB1C1Q8TD33 95 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 ITLN1Q8WWA0 313 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 GNPNAT1Q96EK6 184 aaPredicted RBP4.83□□□□□ -1.64
VPS39-209ENST00000568029 COQ2Q96H96 371 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 HSD17B10Q99714 261 aaKnown RBP4.83□□□□□ -1.64
VPS39-209ENST00000568029 MRPL37Q9BZE1 423 aaKnown RBP4.83□□□□□ -1.64
VPS39-209ENST00000568029 NPFFR1Q9GZQ6 430 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 EGLN1Q9GZT9 426 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 MAGT1Q9H0U3 335 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 HRH4Q9H3N8 390 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 NARFLQ9H6Q4 476 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.83□□□□□ -1.64
VPS39-209ENST00000568029 COA4Q9NYJ1 87 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 CACFD1Q9UGQ2 172 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 RNF150Q9ULK6 438 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 MMP24Q9Y5R2 645 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 IGKV1D-17A0A075B6S4 117 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 IGSF23A1L1A6 192 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 F8W036 122 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 RNASEK-C17orf49H0YIS7 233 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 C15orf65H3BRN8 121 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 TOR1AO14656 332 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 ITGB1BP1O14713 200 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 RAB29O14966 203 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 SYNGR2O43760 224 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 YPEL1O60688 119 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 ZNF737O75373 536 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 DANCRP0C864 163 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 SPP1P10451 314 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 MUC1P15941 1255 aaPredicted RBP4.82□□□□□ -1.64
VPS39-209ENST00000568029 OMGP23515 440 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 PPP1CCP36873 323 aaKnown RBP4.82□□□□□ -1.64
VPS39-209ENST00000568029 KIR2DS2P43631 304 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 SULT1A1P50225 295 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 RAB7AP51149 207 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 DYNLT3P51808 116 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 RAB2AP61019 212 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 HBG1P69891 147 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 HBG2P69892 147 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 DEFA5Q01523 94 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 EDDM3AQ14507 147 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 PEA15Q15121 130 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 ZNF585BQ52M93 769 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 SLC25A24Q6NUK1 477 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 SVBPQ8N300 66 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 FGFRL1Q8N441 504 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 GCSAMQ8N6F7 178 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 NRACQ8N912 160 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 TMEM116Q8NCL8 245 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 LFNGQ8NES3 379 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 OR13A1Q8NGR1 328 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 OR2G3Q8NGZ4 309 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 RFESDQ8TAC1 157 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 FAM222BQ8WU58 562 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 TCTEX1D2Q8WW35 142 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 BSCL2Q96G97 398 aaPredicted RBP4.82□□□□□ -1.64
VPS39-209ENST00000568029 YPEL2Q96QA6 119 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 TSNAXQ99598 290 aaKnown RBP4.82□□□□□ -1.64
VPS39-209ENST00000568029 ATP5SQ99766 215 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 FAM234AQ9H0X4 552 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 OR2D2Q9H210 308 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 ESRP2Q9H6T0 727 aaKnown RBP4.82□□□□□ -1.64
VPS39-209ENST00000568029 ZNF665Q9H7R5 613 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 WFDC1Q9HC57 220 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 PSENENQ9NZ42 101 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 GNG12Q9UBI6 72 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 CACNG5Q9UF02 275 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 JPT1Q9UK76 154 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 PRELID3BQ9Y3B1 194 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 WSB1Q9Y6I7 421 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 ARHGAP21Q5T5U3 1957 aa4.82□□□□□ -1.64
VPS39-209ENST00000568029 IGHV3OR15-7A0A075B7D8 119 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 TRGV10A0A0A0MS01 117 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 BTBD17A6NE02 478 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 DPRXA6NFQ7 191 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 NKX6-3A6NJ46 265 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 ABCD4O14678 606 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 TXNL1O43396 289 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms