RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 TMBIM6P55061 237 aa14.34□□□□□ -0.11
CLN3-227ENST00000567495 UCP3P55916 312 aa14.34□□□□□ -0.11
CLN3-227ENST00000567495 EXOSC2Q13868 293 aaKnown RBP14.34□□□□□ -0.11
CLN3-227ENST00000567495 KLK9Q2XQG4 91 aa14.34□□□□□ -0.11
CLN3-227ENST00000567495 C15orf32Q32M92 178 aa14.34□□□□□ -0.11
CLN3-227ENST00000567495 THOC7Q6I9Y2 204 aaKnown RBP14.34□□□□□ -0.11
CLN3-227ENST00000567495 SLC38A6Q8IZM9 456 aa14.34□□□□□ -0.11
CLN3-227ENST00000567495 OR9G4Q8NGQ1 327 aa14.34□□□□□ -0.11
CLN3-227ENST00000567495 FXYD6Q9H0Q3 95 aa14.34□□□□□ -0.11
CLN3-227ENST00000567495 KLK9Q9UKQ9 250 aa14.34□□□□□ -0.11
CLN3-227ENST00000567495 SORL1Q92673 2214 aa14.33□□□□□ -0.12
CLN3-227ENST00000567495 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.33□□□□□ -0.12
CLN3-227ENST00000567495 E7EUB6 86 aa14.33□□□□□ -0.12
CLN3-227ENST00000567495 IFNA6P05013 189 aa14.33□□□□□ -0.12
CLN3-227ENST00000567495 NHLRC4P0CG21 123 aaPredicted RBP14.33□□□□□ -0.12
CLN3-227ENST00000567495 SYNJ2BPP57105 145 aa14.33□□□□□ -0.12
CLN3-227ENST00000567495 OR2B8PP59922 312 aa14.33□□□□□ -0.12
CLN3-227ENST00000567495 HSD17B13Q7Z5P4 300 aaPredicted RBP14.33□□□□□ -0.12
CLN3-227ENST00000567495 A0A1B0GW64 132 aa14.32□□□□□ -0.12
CLN3-227ENST00000567495 MARCH11A6NNE9 402 aa14.32□□□□□ -0.12
CLN3-227ENST00000567495 OR2J3O76001 311 aa14.32□□□□□ -0.12
CLN3-227ENST00000567495 TRBV12-3P01733 135 aa14.32□□□□□ -0.12
CLN3-227ENST00000567495 DEFA4P12838 97 aa14.32□□□□□ -0.12
CLN3-227ENST00000567495 AREGP15514 252 aa14.32□□□□□ -0.12
CLN3-227ENST00000567495 SPNP16150 400 aa14.32□□□□□ -0.12
CLN3-227ENST00000567495 CTRB1P17538 263 aa14.32□□□□□ -0.12
CLN3-227ENST00000567495 LPAR6P43657 344 aa14.32□□□□□ -0.12
CLN3-227ENST00000567495 RPL5P46777 297 aaKnown RBP14.32□□□□□ -0.12
CLN3-227ENST00000567495 MRPS10P82664 201 aaKnown RBP14.32□□□□□ -0.12
CLN3-227ENST00000567495 DEFA5Q01523 94 aa14.32□□□□□ -0.12
CLN3-227ENST00000567495 RNASE10Q5GAN6 216 aaKnown RBP14.32□□□□□ -0.12
CLN3-227ENST00000567495 CTRB2Q6GPI1 263 aa14.32□□□□□ -0.12
CLN3-227ENST00000567495 CLVS1Q8IUQ0 354 aaPredicted RBP14.32□□□□□ -0.12
CLN3-227ENST00000567495 ARRDC1Q8N5I2 433 aa14.32□□□□□ -0.12
CLN3-227ENST00000567495 FCAMRQ8WWV6 532 aa14.32□□□□□ -0.12
CLN3-227ENST00000567495 RSRP1Q9BUV0 290 aa14.32□□□□□ -0.12
CLN3-227ENST00000567495 QTRT1Q9BXR0 403 aaKnown RBP14.32□□□□□ -0.12
CLN3-227ENST00000567495 SIGLEC8Q9NYZ4 499 aa14.32□□□□□ -0.12
CLN3-227ENST00000567495 RABL2AQ9UBK7 228 aaPredicted RBP14.32□□□□□ -0.12
CLN3-227ENST00000567495 MTFP1Q9UDX5 166 aa14.32□□□□□ -0.12
CLN3-227ENST00000567495 FBXL7Q9UJT9 491 aa14.32□□□□□ -0.12
CLN3-227ENST00000567495 RABL2BQ9UNT1 228 aa14.32□□□□□ -0.12
CLN3-227ENST00000567495 SMAD5-AS1Q9Y6J3 95 aa14.32□□□□□ -0.12
CLN3-227ENST00000567495 RGS5O15539 181 aa14.31□□□□□ -0.12
CLN3-227ENST00000567495 CYB5BO43169 146 aa14.31□□□□□ -0.12
CLN3-227ENST00000567495 SNAPC5O75971 98 aa14.31□□□□□ -0.12
CLN3-227ENST00000567495 IGLV1-51P01701 117 aa14.31□□□□□ -0.12
CLN3-227ENST00000567495 GP9P14770 177 aa14.31□□□□□ -0.12
CLN3-227ENST00000567495 PHLDA2Q53GA4 152 aa14.31□□□□□ -0.12
CLN3-227ENST00000567495 OR52I2Q8NH67 350 aa14.31□□□□□ -0.12
CLN3-227ENST00000567495 FANCD2OSQ96PS1 177 aa14.31□□□□□ -0.12
CLN3-227ENST00000567495 ABHD1Q96SE0 405 aa14.31□□□□□ -0.12
CLN3-227ENST00000567495 FKBP11Q9NYL4 201 aa14.31□□□□□ -0.12
CLN3-227ENST00000567495 PEMTQ9UBM1 199 aa14.31□□□□□ -0.12
CLN3-227ENST00000567495 KLK11Q9UBX7 282 aa14.31□□□□□ -0.12
CLN3-227ENST00000567495 H0Y980 276 aa14.3□□□□□ -0.12
CLN3-227ENST00000567495 BMPR1BO00238 502 aa14.3□□□□□ -0.12
CLN3-227ENST00000567495 NOL3O60936 208 aaKnown RBP14.3□□□□□ -0.12
CLN3-227ENST00000567495 KRASP01116 189 aa14.3□□□□□ -0.12
CLN3-227ENST00000567495 SSBP1Q04837 148 aaKnown RBP14.3□□□□□ -0.12
CLN3-227ENST00000567495 SPCS2Q15005 226 aa14.3□□□□□ -0.12
CLN3-227ENST00000567495 ZNF585BQ52M93 769 aa14.3□□□□□ -0.12
CLN3-227ENST00000567495 OR1L8Q8NGR8 309 aa14.3□□□□□ -0.12
CLN3-227ENST00000567495 ZNF486Q96H40 463 aaPredicted RBP14.3□□□□□ -0.12
CLN3-227ENST00000567495 CXorf58Q96LI9 332 aa14.3□□□□□ -0.12
CLN3-227ENST00000567495 TSC22D3Q99576 134 aa14.3□□□□□ -0.12
CLN3-227ENST00000567495 THYN1Q9P016 225 aa14.3□□□□□ -0.12
CLN3-227ENST00000567495 CCDC59Q9P031 241 aaKnown RBP14.3□□□□□ -0.12
CLN3-227ENST00000567495 TRAV3A0A0B4J244 114 aa14.29□□□□□ -0.12
CLN3-227ENST00000567495 IGLC7A0M8Q6 106 aa14.29□□□□□ -0.12
CLN3-227ENST00000567495 CGB1A6NKQ9 187 aa14.29□□□□□ -0.12
CLN3-227ENST00000567495 GABARAPH6UMI1 98 aa14.29□□□□□ -0.12
CLN3-227ENST00000567495 M0QYG6 137 aa14.29□□□□□ -0.12
CLN3-227ENST00000567495 GGCTO75223 188 aaKnown RBP14.29□□□□□ -0.12
CLN3-227ENST00000567495 TRAPPC2P0DI81 140 aa14.29□□□□□ -0.12
CLN3-227ENST00000567495 TRAPPC2BP0DI82 140 aa14.29□□□□□ -0.12
CLN3-227ENST00000567495 IL34Q6ZMJ4 242 aa14.29□□□□□ -0.12
CLN3-227ENST00000567495 EEF1AKMT3Q96AZ1 226 aa14.29□□□□□ -0.12
CLN3-227ENST00000567495 PRNDQ9UKY0 176 aa14.29□□□□□ -0.12
CLN3-227ENST00000567495 IGLV11-55A0A075B6I3 123 aa14.28□□□□□ -0.12
CLN3-227ENST00000567495 TRBV7-1A0A0A6YYK4 115 aa14.28□□□□□ -0.12
CLN3-227ENST00000567495 CD3DP04234 171 aa14.28□□□□□ -0.12
CLN3-227ENST00000567495 MYOD1P15172 320 aa14.28□□□□□ -0.12
CLN3-227ENST00000567495 PTBP1P26599 531 aaKnown RBP eCLIP14.28□□□□□ -0.12
CLN3-227ENST00000567495 TAS2R19P59542 299 aa14.28□□□□□ -0.12
CLN3-227ENST00000567495 RND3P61587 244 aa14.28□□□□□ -0.12
CLN3-227ENST00000567495 TBC1D26Q86UD7 250 aa14.28□□□□□ -0.12
CLN3-227ENST00000567495 TMEM229BQ8NBD8 167 aa14.28□□□□□ -0.12
CLN3-227ENST00000567495 OR5B3Q8NH48 314 aa14.28□□□□□ -0.12
CLN3-227ENST00000567495 MIXL1Q9H2W2 232 aa14.28□□□□□ -0.12
CLN3-227ENST00000567495 TEX50A0A1B0GTY4 177 aa14.27□□□□□ -0.13
CLN3-227ENST00000567495 CTDSP2O14595 271 aa14.27□□□□□ -0.13
CLN3-227ENST00000567495 NDUFB8O95169 186 aa14.27□□□□□ -0.13
CLN3-227ENST00000567495 CD74P04233 296 aa14.27□□□□□ -0.13
CLN3-227ENST00000567495 SERPINE2P07093 398 aa14.27□□□□□ -0.13
CLN3-227ENST00000567495 CSN3P07498 182 aa14.27□□□□□ -0.13
CLN3-227ENST00000567495 PGAM2P15259 253 aa14.27□□□□□ -0.13
CLN3-227ENST00000567495 RPA2P15927 270 aa14.27□□□□□ -0.13
CLN3-227ENST00000567495 G6PCP35575 357 aa14.27□□□□□ -0.13
CLN3-227ENST00000567495 RNASE12Q5GAN4 147 aaKnown RBP14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms