RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 CD83Q01151 205 aa9.55□□□□□ -0.88
SF3B3-208ENST00000567250 SRSF4Q08170 494 aaKnown RBP9.55□□□□□ -0.88
SF3B3-208ENST00000567250 FAM219AQ8IW50 185 aa9.55□□□□□ -0.88
SF3B3-208ENST00000567250 MRPL41Q8IXM3 137 aaKnown RBP9.55□□□□□ -0.88
SF3B3-208ENST00000567250 MINDY2Q8NBR6 621 aa9.55□□□□□ -0.88
SF3B3-208ENST00000567250 RBPMSQ93062 196 aaKnown RBP9.55□□□□□ -0.88
SF3B3-208ENST00000567250 IL22RA2Q969J5 263 aa9.55□□□□□ -0.88
SF3B3-208ENST00000567250 TMEM230Q96A57 120 aa9.55□□□□□ -0.88
SF3B3-208ENST00000567250 RRNAD1Q96FB5 475 aaKnown RBP9.55□□□□□ -0.88
SF3B3-208ENST00000567250 SEC22AQ96IW7 307 aa9.55□□□□□ -0.88
SF3B3-208ENST00000567250 CITED2Q99967 270 aaPredicted RBP9.55□□□□□ -0.88
SF3B3-208ENST00000567250 SLA2Q9H6Q3 261 aa9.55□□□□□ -0.88
SF3B3-208ENST00000567250 ZFP57Q9NU63 452 aa9.55□□□□□ -0.88
SF3B3-208ENST00000567250 PRNDQ9UKY0 176 aa9.55□□□□□ -0.88
SF3B3-208ENST00000567250 NUBP2Q9Y5Y2 271 aa9.55□□□□□ -0.88
SF3B3-208ENST00000567250 C15orf61A6NNL5 157 aa9.54□□□□□ -0.88
SF3B3-208ENST00000567250 CDS2O95674 445 aa9.54□□□□□ -0.88
SF3B3-208ENST00000567250 IL6RP08887 468 aaPredicted RBP9.54□□□□□ -0.88
SF3B3-208ENST00000567250 PF4V1P10720 104 aa9.54□□□□□ -0.88
SF3B3-208ENST00000567250 VAMP1P23763 118 aa9.54□□□□□ -0.88
SF3B3-208ENST00000567250 PSMB8P28062 276 aa9.54□□□□□ -0.88
SF3B3-208ENST00000567250 BTCP35070 178 aa9.54□□□□□ -0.88
SF3B3-208ENST00000567250 DEFA1P59665 94 aa9.54□□□□□ -0.88
SF3B3-208ENST00000567250 DEFA3P59666 94 aa9.54□□□□□ -0.88
SF3B3-208ENST00000567250 ASAH1Q13510 395 aa9.54□□□□□ -0.88
SF3B3-208ENST00000567250 MRGPRG-AS1Q2M3A8 158 aa9.54□□□□□ -0.88
SF3B3-208ENST00000567250 SP6Q3SY56 376 aa9.54□□□□□ -0.88
SF3B3-208ENST00000567250 C19orf54Q5BKX5 351 aa9.54□□□□□ -0.88
SF3B3-208ENST00000567250 C10orf99Q6UWK7 81 aa9.54□□□□□ -0.88
SF3B3-208ENST00000567250 HSD17B13Q7Z5P4 300 aaPredicted RBP9.54□□□□□ -0.88
SF3B3-208ENST00000567250 SLC25A42Q86VD7 318 aa9.54□□□□□ -0.88
SF3B3-208ENST00000567250 ZNF695Q8IW36 515 aa9.54□□□□□ -0.88
SF3B3-208ENST00000567250 RNF152Q8N8N0 203 aa9.54□□□□□ -0.88
SF3B3-208ENST00000567250 ADAD2Q8NCV1 583 aaKnown RBP9.54□□□□□ -0.88
SF3B3-208ENST00000567250 OR4F17Q8NGA8 305 aa9.54□□□□□ -0.88
SF3B3-208ENST00000567250 OR5B3Q8NH48 314 aa9.54□□□□□ -0.88
SF3B3-208ENST00000567250 OR4A16Q8NH70 328 aa9.54□□□□□ -0.88
SF3B3-208ENST00000567250 OR4F4Q96R69 305 aa9.54□□□□□ -0.88
SF3B3-208ENST00000567250 SRSF8Q9BRL6 282 aaKnown RBP9.54□□□□□ -0.88
SF3B3-208ENST00000567250 PDCD10Q9BUL8 212 aa9.54□□□□□ -0.88
SF3B3-208ENST00000567250 DUXBA0A1W2PPF3 345 aa9.53□□□□□ -0.88
SF3B3-208ENST00000567250 MSGN1A6NI15 193 aa9.53□□□□□ -0.88
SF3B3-208ENST00000567250 PLA2G10O15496 165 aa9.53□□□□□ -0.88
SF3B3-208ENST00000567250 RBMXL2O75526 392 aaKnown RBP9.53□□□□□ -0.88
SF3B3-208ENST00000567250 DHFRP00374 187 aa9.53□□□□□ -0.88
SF3B3-208ENST00000567250 IGKV1-39P01597 117 aa9.53□□□□□ -0.88
SF3B3-208ENST00000567250 IGLV1-40P01703 118 aa9.53□□□□□ -0.88
SF3B3-208ENST00000567250 IGKV1D-39P04432 117 aa9.53□□□□□ -0.88
SF3B3-208ENST00000567250 EGR2P11161 476 aaPredicted RBP9.53□□□□□ -0.88
SF3B3-208ENST00000567250 RAB25P57735 213 aa9.53□□□□□ -0.88
SF3B3-208ENST00000567250 RPL23AP62750 156 aaKnown RBP9.53□□□□□ -0.88
SF3B3-208ENST00000567250 C10orf55Q5SWW7 151 aa9.53□□□□□ -0.88
SF3B3-208ENST00000567250 TMEM268Q5VZI3 342 aa9.53□□□□□ -0.88
SF3B3-208ENST00000567250 LGI3Q8N145 548 aa9.53□□□□□ -0.88
SF3B3-208ENST00000567250 OR1L8Q8NGR8 309 aa9.53□□□□□ -0.88
SF3B3-208ENST00000567250 FAM110DQ8TAY7 271 aaPredicted RBP9.53□□□□□ -0.88
SF3B3-208ENST00000567250 ENKURQ8TC29 256 aa9.53□□□□□ -0.88
SF3B3-208ENST00000567250 GLYATL2Q8WU03 294 aa9.53□□□□□ -0.88
SF3B3-208ENST00000567250 FYTTD1Q96QD9 318 aaKnown RBP9.53□□□□□ -0.88
SF3B3-208ENST00000567250 QTRT1Q9BXR0 403 aaKnown RBP9.53□□□□□ -0.88
SF3B3-208ENST00000567250 C20orf85Q9H1P6 137 aa9.53□□□□□ -0.88
SF3B3-208ENST00000567250 COA4Q9NYJ1 87 aa9.53□□□□□ -0.88
SF3B3-208ENST00000567250 ZNF257Q9Y2Q1 563 aa9.53□□□□□ -0.88
SF3B3-208ENST00000567250 TNCP24821 2201 aa9.53□□□□□ -0.88
SF3B3-208ENST00000567250 FAM240BA0A1B0GVZ2 78 aa9.52□□□□□ -0.89
SF3B3-208ENST00000567250 NUDT19A8MXV4 375 aa9.52□□□□□ -0.89
SF3B3-208ENST00000567250 HLA-AP01891 365 aaKnown RBP9.52□□□□□ -0.89
SF3B3-208ENST00000567250 OR9G9P0C7N8 305 aa9.52□□□□□ -0.89
SF3B3-208ENST00000567250 OR2B8PP59922 312 aa9.52□□□□□ -0.89
SF3B3-208ENST00000567250 SUPT4H1P63272 117 aaKnown RBP9.52□□□□□ -0.89
SF3B3-208ENST00000567250 TMEM187Q14656 261 aa9.52□□□□□ -0.89
SF3B3-208ENST00000567250 NSUN5P1Q3KNT7 163 aa9.52□□□□□ -0.89
SF3B3-208ENST00000567250 TCTEX1D4Q5JR98 221 aa9.52□□□□□ -0.89
SF3B3-208ENST00000567250 ZNF429Q86V71 674 aa9.52□□□□□ -0.89
SF3B3-208ENST00000567250 KLHL30-AS1Q8NEE0 82 aa9.52□□□□□ -0.89
SF3B3-208ENST00000567250 LSM10Q969L4 123 aaKnown RBP9.52□□□□□ -0.89
SF3B3-208ENST00000567250 TMEM56Q96MV1 263 aa9.52□□□□□ -0.89
SF3B3-208ENST00000567250 ZNF355PQ9NSJ1 428 aa9.52□□□□□ -0.89
SF3B3-208ENST00000567250 TMEM14BQ9NUH8 114 aa9.52□□□□□ -0.89
SF3B3-208ENST00000567250 CACFD1Q9UGQ2 172 aa9.52□□□□□ -0.89
SF3B3-208ENST00000567250 OR51B2Q9Y5P1 312 aa9.52□□□□□ -0.89
SF3B3-208ENST00000567250 TMEM56-RWDD3S4R434 201 aa9.52□□□□□ -0.89
SF3B3-208ENST00000567250 TRAV3A0A0B4J244 114 aa9.51□□□□□ -0.89
SF3B3-208ENST00000567250 A0A0B4J2A0 478 aa9.51□□□□□ -0.89
SF3B3-208ENST00000567250 A0A0G2JLM5 398 aa9.51□□□□□ -0.89
SF3B3-208ENST00000567250 A0A1W2PRX2 142 aa9.51□□□□□ -0.89
SF3B3-208ENST00000567250 NPIPB5A8MRT5 1133 aa9.51□□□□□ -0.89
SF3B3-208ENST00000567250 TEX22C9J3V5 150 aa9.51□□□□□ -0.89
SF3B3-208ENST00000567250 CYB5BO43169 146 aa9.51□□□□□ -0.89
SF3B3-208ENST00000567250 BRI3O95415 125 aa9.51□□□□□ -0.89
SF3B3-208ENST00000567250 IGKV1-5P01602 117 aa9.51□□□□□ -0.89
SF3B3-208ENST00000567250 RPLP1P05386 114 aaKnown RBP9.51□□□□□ -0.89
SF3B3-208ENST00000567250 TRAPPC2P0DI81 140 aa9.51□□□□□ -0.89
SF3B3-208ENST00000567250 TRAPPC2BP0DI82 140 aa9.51□□□□□ -0.89
SF3B3-208ENST00000567250 APELAP0DMC3 54 aa9.51□□□□□ -0.89
SF3B3-208ENST00000567250 CDX1P47902 265 aaPredicted RBP9.51□□□□□ -0.89
SF3B3-208ENST00000567250 RAB9AP51151 201 aa9.51□□□□□ -0.89
SF3B3-208ENST00000567250 MECP2P51608 486 aaKnown RBP9.51□□□□□ -0.89
SF3B3-208ENST00000567250 TPPP2P59282 170 aa9.51□□□□□ -0.89
SF3B3-208ENST00000567250 PPP1R1AQ13522 171 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 142 ms