RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 MPPED1O15442 326 aa7.59□□□□□ -1.19
CLN3-220ENST00000566040 WIPF1O43516 503 aa7.59□□□□□ -1.19
CLN3-220ENST00000566040 CTSDP07339 412 aaPredicted RBP7.59□□□□□ -1.19
CLN3-220ENST00000566040 FGF2P09038 288 aa7.59□□□□□ -1.19
CLN3-220ENST00000566040 IGLL1P15814 213 aa7.59□□□□□ -1.19
CLN3-220ENST00000566040 NQO2P16083 231 aa7.59□□□□□ -1.19
CLN3-220ENST00000566040 G6PCP35575 357 aa7.59□□□□□ -1.19
CLN3-220ENST00000566040 PIGPP57054 158 aa7.59□□□□□ -1.19
CLN3-220ENST00000566040 KRTAP10-11P60412 298 aa7.59□□□□□ -1.19
CLN3-220ENST00000566040 Q8N402 240 aa7.59□□□□□ -1.19
CLN3-220ENST00000566040 OR10W1Q8NGF6 305 aa7.59□□□□□ -1.19
CLN3-220ENST00000566040 OR5M8Q8NGP6 311 aa7.59□□□□□ -1.19
CLN3-220ENST00000566040 ABHD5Q8WTS1 349 aa7.59□□□□□ -1.19
CLN3-220ENST00000566040 ZNF486Q96H40 463 aaPredicted RBP7.59□□□□□ -1.19
CLN3-220ENST00000566040 MS4A10Q96PG2 267 aa7.59□□□□□ -1.19
CLN3-220ENST00000566040 OR5B12Q96R08 314 aa7.59□□□□□ -1.19
CLN3-220ENST00000566040 GON7Q9BXV9 100 aa7.59□□□□□ -1.19
CLN3-220ENST00000566040 NSG2Q9Y328 171 aa7.59□□□□□ -1.19
CLN3-220ENST00000566040 CCL24O00175 119 aa7.58□□□□□ -1.2
CLN3-220ENST00000566040 HRASP01112 189 aa7.58□□□□□ -1.2
CLN3-220ENST00000566040 IGHV3-11P01762 117 aa7.58□□□□□ -1.2
CLN3-220ENST00000566040 CRYGCP07315 174 aa7.58□□□□□ -1.2
CLN3-220ENST00000566040 LGALS1P09382 135 aaKnown RBP7.58□□□□□ -1.2
CLN3-220ENST00000566040 CTRB1P17538 263 aa7.58□□□□□ -1.2
CLN3-220ENST00000566040 HLA-GP17693 338 aa7.58□□□□□ -1.2
CLN3-220ENST00000566040 UCP1P25874 307 aa7.58□□□□□ -1.2
CLN3-220ENST00000566040 SLC6A1P30531 599 aa7.58□□□□□ -1.2
CLN3-220ENST00000566040 MYCNOSP40205 109 aa7.58□□□□□ -1.2
CLN3-220ENST00000566040 RPL27AP46776 148 aaKnown RBP7.58□□□□□ -1.2
CLN3-220ENST00000566040 RPL8P62917 257 aaKnown RBP7.58□□□□□ -1.2
CLN3-220ENST00000566040 WT1-ASQ06250 92 aa7.58□□□□□ -1.2
CLN3-220ENST00000566040 CBX3Q13185 183 aa7.58□□□□□ -1.2
CLN3-220ENST00000566040 MEF2DQ14814 521 aa7.58□□□□□ -1.2
CLN3-220ENST00000566040 CNPY1Q3B7I2 92 aa7.58□□□□□ -1.2
CLN3-220ENST00000566040 SP6Q3SY56 376 aa7.58□□□□□ -1.2
CLN3-220ENST00000566040 SCGB2B2Q4G0G5 96 aa7.58□□□□□ -1.2
CLN3-220ENST00000566040 CTRB2Q6GPI1 263 aa7.58□□□□□ -1.2
CLN3-220ENST00000566040 Q6ZRM9 215 aa7.58□□□□□ -1.2
CLN3-220ENST00000566040 TTC9CQ8N5M4 171 aa7.58□□□□□ -1.2
CLN3-220ENST00000566040 GLYATL2Q8WU03 294 aa7.58□□□□□ -1.2
CLN3-220ENST00000566040 TMEM14BQ9NUH8 114 aa7.58□□□□□ -1.2
CLN3-220ENST00000566040 PRR13Q9NZ81 148 aa7.58□□□□□ -1.2
CLN3-220ENST00000566040 NDUFA13Q9P0J0 144 aa7.58□□□□□ -1.2
CLN3-220ENST00000566040 TEX50A0A1B0GTY4 177 aa7.57□□□□□ -1.2
CLN3-220ENST00000566040 CRYM-AS1A6NIL9 109 aa7.57□□□□□ -1.2
CLN3-220ENST00000566040 C15orf61A6NNL5 157 aa7.57□□□□□ -1.2
CLN3-220ENST00000566040 NPIPB5A8MRT5 1133 aa7.57□□□□□ -1.2
CLN3-220ENST00000566040 NUDT19A8MXV4 375 aa7.57□□□□□ -1.2
CLN3-220ENST00000566040 H3BUA1 57 aa7.57□□□□□ -1.2
CLN3-220ENST00000566040 CNIH1O95406 144 aa7.57□□□□□ -1.2
CLN3-220ENST00000566040 KRASP01116 189 aa7.57□□□□□ -1.2
CLN3-220ENST00000566040 PRB2P02812 416 aaPredicted RBP7.57□□□□□ -1.2
CLN3-220ENST00000566040 TRGV3P03979 118 aa7.57□□□□□ -1.2
CLN3-220ENST00000566040 REG1AP05451 166 aa7.57□□□□□ -1.2
CLN3-220ENST00000566040 MAS1LP35410 378 aa7.57□□□□□ -1.2
CLN3-220ENST00000566040 SLURP1P55000 103 aa7.57□□□□□ -1.2
CLN3-220ENST00000566040 TPPP2P59282 170 aa7.57□□□□□ -1.2
CLN3-220ENST00000566040 SURF2Q15527 256 aaPredicted RBP7.57□□□□□ -1.2
CLN3-220ENST00000566040 PYDC2Q56P42 97 aa7.57□□□□□ -1.2
CLN3-220ENST00000566040 C11orf87Q6NUJ2 197 aa7.57□□□□□ -1.2
CLN3-220ENST00000566040 CMTM1Q8IZ96 169 aa7.57□□□□□ -1.2
CLN3-220ENST00000566040 GDPD1Q8N9F7 314 aa7.57□□□□□ -1.2
CLN3-220ENST00000566040 OR4A5Q8NH83 315 aa7.57□□□□□ -1.2
CLN3-220ENST00000566040 VSTM2AQ8TAG5 236 aa7.57□□□□□ -1.2
CLN3-220ENST00000566040 CD300LFQ8TDQ1 290 aa7.57□□□□□ -1.2
CLN3-220ENST00000566040 BORCS5Q969J3 196 aa7.57□□□□□ -1.2
CLN3-220ENST00000566040 CCDC140Q96MF4 163 aa7.57□□□□□ -1.2
CLN3-220ENST00000566040 NDUFA4L2Q9NRX3 87 aa7.57□□□□□ -1.2
CLN3-220ENST00000566040 TENM3Q9P273 2699 aa7.56□□□□□ -1.2
CLN3-220ENST00000566040 IGLV11-55A0A075B6I3 123 aa7.56□□□□□ -1.2
CLN3-220ENST00000566040 A0A0B4J293 547 aa7.56□□□□□ -1.2
CLN3-220ENST00000566040 C3orf85A0A1B0GTC6 90 aa7.56□□□□□ -1.2
CLN3-220ENST00000566040 F8W735 103 aaPredicted RBP7.56□□□□□ -1.2
CLN3-220ENST00000566040 PLA2G10O15496 165 aa7.56□□□□□ -1.2
CLN3-220ENST00000566040 IFNA6P05013 189 aa7.56□□□□□ -1.2
CLN3-220ENST00000566040 OR5AC1P0C628 307 aa7.56□□□□□ -1.2
CLN3-220ENST00000566040 PGAM2P15259 253 aa7.56□□□□□ -1.2
CLN3-220ENST00000566040 PSMB6P28072 239 aa7.56□□□□□ -1.2
CLN3-220ENST00000566040 EGFEM1PQ0D2K5 195 aa7.56□□□□□ -1.2
CLN3-220ENST00000566040 TMEM267Q0VDI3 215 aaPredicted RBP7.56□□□□□ -1.2
CLN3-220ENST00000566040 AARDQ4LEZ3 155 aa7.56□□□□□ -1.2
CLN3-220ENST00000566040 LPCAT3Q6P1A2 487 aa7.56□□□□□ -1.2
CLN3-220ENST00000566040 ZNF343Q6P1L6 599 aa7.56□□□□□ -1.2
CLN3-220ENST00000566040 OR11H1Q8NG94 326 aa7.56□□□□□ -1.2
CLN3-220ENST00000566040 TMEM222Q9H0R3 208 aa7.56□□□□□ -1.2
CLN3-220ENST00000566040 SLA2Q9H6Q3 261 aa7.56□□□□□ -1.2
CLN3-220ENST00000566040 NAA60Q9H7X0 242 aa7.56□□□□□ -1.2
CLN3-220ENST00000566040 MFSD2BA6NFX1 497 aa7.55□□□□□ -1.2
CLN3-220ENST00000566040 DISC1C4P0D8 188 aa7.55□□□□□ -1.2
CLN3-220ENST00000566040 BMPR1BO00238 502 aa7.55□□□□□ -1.2
CLN3-220ENST00000566040 NDUFB8O95169 186 aa7.55□□□□□ -1.2
CLN3-220ENST00000566040 CDS2O95674 445 aa7.55□□□□□ -1.2
CLN3-220ENST00000566040 PF4P02776 101 aa7.55□□□□□ -1.2
CLN3-220ENST00000566040 IL7P13232 177 aa7.55□□□□□ -1.2
CLN3-220ENST00000566040 EDN2P20800 178 aa7.55□□□□□ -1.2
CLN3-220ENST00000566040 S100A5P33763 92 aa7.55□□□□□ -1.2
CLN3-220ENST00000566040 CCR6P51684 374 aa7.55□□□□□ -1.2
CLN3-220ENST00000566040 RHOGP84095 191 aa7.55□□□□□ -1.2
CLN3-220ENST00000566040 DEFA6Q01524 100 aa7.55□□□□□ -1.2
CLN3-220ENST00000566040 ZNF616Q08AN1 781 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms