RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 FHL3Q13643 280 aa7.12□□□□□ -1.27
VPS35-206ENST00000565228 OXLD1Q5BKU9 147 aa7.12□□□□□ -1.27
VPS35-206ENST00000565228 SAMD5Q5TGI4 173 aa7.12□□□□□ -1.27
VPS35-206ENST00000565228 ZNF695Q8IW36 515 aa7.12□□□□□ -1.27
VPS35-206ENST00000565228 OR10W1Q8NGF6 305 aa7.12□□□□□ -1.27
VPS35-206ENST00000565228 ABHD5Q8WTS1 349 aa7.12□□□□□ -1.27
VPS35-206ENST00000565228 GLYATL2Q8WU03 294 aa7.12□□□□□ -1.27
VPS35-206ENST00000565228 ZNF414Q96IQ9 312 aa7.12□□□□□ -1.27
VPS35-206ENST00000565228 FANCD2OSQ96PS1 177 aa7.12□□□□□ -1.27
VPS35-206ENST00000565228 IGHV4OR15-8A0A075B7B6 117 aa7.11□□□□□ -1.27
VPS35-206ENST00000565228 A0A087WW49 117 aa7.11□□□□□ -1.27
VPS35-206ENST00000565228 TRBV9A0A0B4J1U6 114 aa7.11□□□□□ -1.27
VPS35-206ENST00000565228 A0A0B4J293 547 aa7.11□□□□□ -1.27
VPS35-206ENST00000565228 CRYM-AS1A6NIL9 109 aa7.11□□□□□ -1.27
VPS35-206ENST00000565228 CNIH1O95406 144 aa7.11□□□□□ -1.27
VPS35-206ENST00000565228 PRB2P02812 416 aaPredicted RBP7.11□□□□□ -1.27
VPS35-206ENST00000565228 IFNA6P05013 189 aa7.11□□□□□ -1.27
VPS35-206ENST00000565228 OR5AC1P0C628 307 aa7.11□□□□□ -1.27
VPS35-206ENST00000565228 IGLL1P15814 213 aa7.11□□□□□ -1.27
VPS35-206ENST00000565228 NQO2P16083 231 aa7.11□□□□□ -1.27
VPS35-206ENST00000565228 HLA-GP17693 338 aa7.11□□□□□ -1.27
VPS35-206ENST00000565228 S100A5P33763 92 aa7.11□□□□□ -1.27
VPS35-206ENST00000565228 CCR6P51684 374 aa7.11□□□□□ -1.27
VPS35-206ENST00000565228 WT1-ASQ06250 92 aa7.11□□□□□ -1.27
VPS35-206ENST00000565228 MEF2DQ14814 521 aa7.11□□□□□ -1.27
VPS35-206ENST00000565228 CXorf66Q5JRM2 361 aaPredicted RBP7.11□□□□□ -1.27
VPS35-206ENST00000565228 MMD2Q8IY49 270 aa7.11□□□□□ -1.27
VPS35-206ENST00000565228 TTC9CQ8N5M4 171 aa7.11□□□□□ -1.27
VPS35-206ENST00000565228 COMMD1Q8N668 190 aa7.11□□□□□ -1.27
VPS35-206ENST00000565228 GDPD1Q8N9F7 314 aa7.11□□□□□ -1.27
VPS35-206ENST00000565228 POC5Q8NA72 575 aa7.11□□□□□ -1.27
VPS35-206ENST00000565228 ZFP57Q9NU63 452 aa7.11□□□□□ -1.27
VPS35-206ENST00000565228 COMMD9Q9P000 198 aa7.11□□□□□ -1.27
VPS35-206ENST00000565228 RABL2AQ9UBK7 228 aaPredicted RBP7.11□□□□□ -1.27
VPS35-206ENST00000565228 RABL2BQ9UNT1 228 aa7.11□□□□□ -1.27
VPS35-206ENST00000565228 S4R3C0 116 aa7.11□□□□□ -1.27
VPS35-206ENST00000565228 C3orf85A0A1B0GTC6 90 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 LINC00854A0A1B0GVQ3 168 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 DISC1C4P0D8 188 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 H0Y980 276 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 CCL24O00175 119 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 NDUFB8O95169 186 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 HRASP01112 189 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 TRGV3P03979 118 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 CRYGCP07315 174 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 IL7P13232 177 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 CTRB1P17538 263 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 UCP1P25874 307 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 RPL27AP46776 148 aaKnown RBP7.1□□□□□ -1.27
VPS35-206ENST00000565228 SLURP1P55000 103 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 KRTAP10-11P60412 298 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 RPL8P62917 257 aaKnown RBP7.1□□□□□ -1.27
VPS35-206ENST00000565228 CBX3Q13185 183 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 TMEM187Q14656 261 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 KLK9Q2XQG4 91 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 BEAN1Q3B7T3 259 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 CTRB2Q6GPI1 263 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 LPCAT3Q6P1A2 487 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 CMTM1Q8IZ96 169 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 SELENOHQ8IZQ5 122 aaKnown RBP7.1□□□□□ -1.27
VPS35-206ENST00000565228 OR5M8Q8NGP6 311 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 C4orf3Q8WVX3 66 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 ZNF486Q96H40 463 aaPredicted RBP7.1□□□□□ -1.27
VPS35-206ENST00000565228 UBE2E2Q96LR5 201 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 FYTTD1Q96QD9 318 aaKnown RBP7.1□□□□□ -1.27
VPS35-206ENST00000565228 QTRT1Q9BXR0 403 aaKnown RBP7.1□□□□□ -1.27
VPS35-206ENST00000565228 NAA60Q9H7X0 242 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 NDUFA4L2Q9NRX3 87 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 MCUBQ9NWR8 336 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 KLK9Q9UKQ9 250 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 FLVCR2Q9UPI3 526 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 DNAH9Q9NYC9 4486 aa7.1□□□□□ -1.27
VPS35-206ENST00000565228 LCE2BO14633 110 aa7.09□□□□□ -1.27
VPS35-206ENST00000565228 BRI3O95415 125 aa7.09□□□□□ -1.27
VPS35-206ENST00000565228 CDS2O95674 445 aa7.09□□□□□ -1.27
VPS35-206ENST00000565228 IGHV3-23P01764 117 aa7.09□□□□□ -1.27
VPS35-206ENST00000565228 EDN2P20800 178 aa7.09□□□□□ -1.27
VPS35-206ENST00000565228 TPPP2P59282 170 aa7.09□□□□□ -1.27
VPS35-206ENST00000565228 RUNX1Q01196 453 aa7.09□□□□□ -1.27
VPS35-206ENST00000565228 SPINK9Q5DT21 86 aa7.09□□□□□ -1.27
VPS35-206ENST00000565228 KPRPQ5T749 579 aaPredicted RBP7.09□□□□□ -1.27
VPS35-206ENST00000565228 CADM3Q8N126 398 aa7.09□□□□□ -1.27
VPS35-206ENST00000565228 TOMM5Q8N4H5 51 aa7.09□□□□□ -1.27
VPS35-206ENST00000565228 TCTEX1D1Q8N7M0 179 aa7.09□□□□□ -1.27
VPS35-206ENST00000565228 DMBX1Q8NFW5 382 aa7.09□□□□□ -1.27
VPS35-206ENST00000565228 OR11H1Q8NG94 326 aa7.09□□□□□ -1.27
VPS35-206ENST00000565228 OR4F17Q8NGA8 305 aa7.09□□□□□ -1.27
VPS35-206ENST00000565228 OR4A5Q8NH83 315 aa7.09□□□□□ -1.27
VPS35-206ENST00000565228 CD300LFQ8TDQ1 290 aa7.09□□□□□ -1.27
VPS35-206ENST00000565228 OR4F4Q96R69 305 aa7.09□□□□□ -1.27
VPS35-206ENST00000565228 PRRT1Q99946 306 aa7.09□□□□□ -1.27
VPS35-206ENST00000565228 GON7Q9BXV9 100 aa7.09□□□□□ -1.27
VPS35-206ENST00000565228 TMEM222Q9H0R3 208 aa7.09□□□□□ -1.27
VPS35-206ENST00000565228 FAM212BQ9NTI7 297 aaPredicted RBP7.09□□□□□ -1.27
VPS35-206ENST00000565228 TMEM14BQ9NUH8 114 aa7.09□□□□□ -1.27
VPS35-206ENST00000565228 IGLV11-55A0A075B6I3 123 aa7.08□□□□□ -1.28
VPS35-206ENST00000565228 TEX13DA0A0J9YY54 714 aaPredicted RBP7.08□□□□□ -1.28
VPS35-206ENST00000565228 C15orf61A6NNL5 157 aa7.08□□□□□ -1.28
VPS35-206ENST00000565228 NUDT19A8MXV4 375 aa7.08□□□□□ -1.28
VPS35-206ENST00000565228 F8W735 103 aaPredicted RBP7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms