RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 FCGR3AP08637 254 aa5.32□□□□□ -1.56
VPS4A-203ENST00000564399 RBMY1A1P0DJD3 496 aaKnown RBP5.32□□□□□ -1.56
VPS4A-203ENST00000564399 RBMY1CP0DJD4 496 aa5.32□□□□□ -1.56
VPS4A-203ENST00000564399 PTBP1P26599 531 aaKnown RBP eCLIP5.32□□□□□ -1.56
VPS4A-203ENST00000564399 RPL8P62917 257 aaKnown RBP5.32□□□□□ -1.56
VPS4A-203ENST00000564399 RBMY1FQ15415 496 aaKnown RBP5.32□□□□□ -1.56
VPS4A-203ENST00000564399 KLK9Q2XQG4 91 aa5.32□□□□□ -1.56
VPS4A-203ENST00000564399 UBE2DNLQ8IWF7 75 aa5.32□□□□□ -1.56
VPS4A-203ENST00000564399 PUSL1Q8N0Z8 303 aaKnown RBP5.32□□□□□ -1.56
VPS4A-203ENST00000564399 GBGT1Q8N5D6 347 aa5.32□□□□□ -1.56
VPS4A-203ENST00000564399 Q8NAQ8 132 aa5.32□□□□□ -1.56
VPS4A-203ENST00000564399 ZNF485Q8NCK3 441 aa5.32□□□□□ -1.56
VPS4A-203ENST00000564399 ZNF555Q8NEP9 628 aa5.32□□□□□ -1.56
VPS4A-203ENST00000564399 OR56B1Q8NGI3 324 aa5.32□□□□□ -1.56
VPS4A-203ENST00000564399 OR4S2Q8NH73 311 aa5.32□□□□□ -1.56
VPS4A-203ENST00000564399 PHYHIPQ92561 330 aa5.32□□□□□ -1.56
VPS4A-203ENST00000564399 CMTM3Q96MX0 182 aa5.32□□□□□ -1.56
VPS4A-203ENST00000564399 RNF2Q99496 336 aa5.32□□□□□ -1.56
VPS4A-203ENST00000564399 CHRDL1Q9BU40 450 aa5.32□□□□□ -1.56
VPS4A-203ENST00000564399 NDUFAF3Q9BU61 184 aa5.32□□□□□ -1.56
VPS4A-203ENST00000564399 C9orf16Q9BUW7 83 aa5.32□□□□□ -1.56
VPS4A-203ENST00000564399 KLK9Q9UKQ9 250 aa5.32□□□□□ -1.56
VPS4A-203ENST00000564399 HERC1Q15751 4861 aa5.32□□□□□ -1.56
VPS4A-203ENST00000564399 A0A075B6Q4 140 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 IGHV3-49A0A0A0MS15 119 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 EFCAB10A6NFE3 127 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 C15orf61A6NNL5 157 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 FOXI3A8MTJ6 420 aaPredicted RBP5.31□□□□□ -1.56
VPS4A-203ENST00000564399 K7EMT4 169 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 MYL12BO14950 172 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 CYB5BO43169 146 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 CDK2AP2O75956 126 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 DIRAS3O95661 229 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 HRASP01112 189 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 IFNA21P01568 189 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 IFNA17P01571 189 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 CD1AP06126 327 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 CDK1P06493 297 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 CD36P16671 472 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 HLA-GP17693 338 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 RASSF2P50749 326 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 RPL30P62888 115 aaKnown RBP5.31□□□□□ -1.56
VPS4A-203ENST00000564399 ST3GAL4Q11206 333 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 HSD17B12Q53GQ0 312 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 PLAC9Q5JTB6 97 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 SLC25A24Q6NUK1 477 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 H1FOOQ8IZA3 346 aaPredicted RBP5.31□□□□□ -1.56
VPS4A-203ENST00000564399 VN1R17PQ8TDU5 208 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 TCTEX1D2Q8WW35 142 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 BSCL2Q96G97 398 aaPredicted RBP5.31□□□□□ -1.56
VPS4A-203ENST00000564399 RHPN1-AS1Q9BWJ2 59 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 HRASLSQ9HDD0 168 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 SMPXQ9UHP9 88 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 ETV7Q9Y603 341 aa5.31□□□□□ -1.56
VPS4A-203ENST00000564399 DNAH2Q9P225 4427 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 FAT2Q9NYQ8 4349 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 NACAE9PAV3 2078 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 IGHV3-21A0A0B4J1V1 117 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 DENRO43583 198 aaKnown RBP5.3□□□□□ -1.56
VPS4A-203ENST00000564399 YIF1AO95070 293 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 AMBPP02760 352 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 MIFP14174 115 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 TALDO1P37837 337 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 WNT4P56705 351 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 CLDN12P56749 244 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 PAFAH1B2P68402 229 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 PLA2G7Q13093 441 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 IRF3Q14653 427 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 RAB11BQ15907 218 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 LINC01559Q495D7 138 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 C1orf134Q5TEV5 83 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 LEMD1Q68G75 181 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 SPSB3Q6PJ21 355 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 ZNF767PQ75MW2 155 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 STHQ8IWL8 128 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 Q8N1X5 172 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 MS4A15Q8N5U1 240 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 UBAC2Q8NBM4 344 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 TMEM116Q8NCL8 245 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 RAB3CQ96E17 227 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 CENPOQ9BU64 300 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 SCRT2Q9NQ03 307 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 SPATA2Q9UM82 520 aa5.3□□□□□ -1.56
VPS4A-203ENST00000564399 RBMX2Q9Y388 322 aaKnown RBP5.3□□□□□ -1.56
VPS4A-203ENST00000564399 IGHV3OR16-13A0A075B7E8 117 aa5.29□□□□□ -1.56
VPS4A-203ENST00000564399 ELOA3CA0A087WX78 387 aaPredicted RBP5.29□□□□□ -1.56
VPS4A-203ENST00000564399 IGHV3-74A0A0B4J1X5 117 aa5.29□□□□□ -1.56
VPS4A-203ENST00000564399 IGHV7-4-1A0A0J9YVY3 117 aa5.29□□□□□ -1.56
VPS4A-203ENST00000564399 IGLC7A0M8Q6 106 aa5.29□□□□□ -1.56
VPS4A-203ENST00000564399 CGB1A6NKQ9 187 aa5.29□□□□□ -1.56
VPS4A-203ENST00000564399 C15orf62A8K5M9 175 aa5.29□□□□□ -1.56
VPS4A-203ENST00000564399 DNASE2O00115 360 aaPredicted RBP5.29□□□□□ -1.56
VPS4A-203ENST00000564399 SLC17A2O00624 439 aa5.29□□□□□ -1.56
VPS4A-203ENST00000564399 CHEK1O14757 476 aa5.29□□□□□ -1.56
VPS4A-203ENST00000564399 SLC22A5O76082 557 aa5.29□□□□□ -1.56
VPS4A-203ENST00000564399 GNB3P16520 340 aa5.29□□□□□ -1.56
VPS4A-203ENST00000564399 NFYAP23511 347 aaPredicted RBP5.29□□□□□ -1.56
VPS4A-203ENST00000564399 GADD45AP24522 165 aa5.29□□□□□ -1.56
VPS4A-203ENST00000564399 NPY1RP25929 384 aa5.29□□□□□ -1.56
VPS4A-203ENST00000564399 DEFB131AP59861 70 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms