RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 RPS16P62249 146 aaKnown RBP7.24□□□□□ -1.25
VPS39-207ENST00000563692 RELBQ01201 579 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 AARDQ4LEZ3 155 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 PDLIM3Q53GG5 364 aaPredicted RBP7.24□□□□□ -1.25
VPS39-207ENST00000563692 OR4A47Q6IF82 309 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 SLC25A24Q6NUK1 477 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 IL17RELQ6ZVW7 336 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 PNKDQ8N490 385 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 OR11H6Q8NGC7 330 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 CLDND2Q8NHS1 167 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 SCGB1C1Q8TD33 95 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 RPEQ96AT9 228 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 GNPNAT1Q96EK6 184 aaPredicted RBP7.24□□□□□ -1.25
VPS39-207ENST00000563692 NABP2Q9BQ15 211 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 GINS3Q9BRX5 216 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 QTRT1Q9BXR0 403 aaKnown RBP7.24□□□□□ -1.25
VPS39-207ENST00000563692 MRPL20Q9BYC9 149 aaKnown RBP7.24□□□□□ -1.25
VPS39-207ENST00000563692 ARV1Q9H2C2 271 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 LPAR2Q9HBW0 351 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 MED9Q9NWA0 146 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 KPTNQ9Y664 436 aa7.24□□□□□ -1.25
VPS39-207ENST00000563692 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.23□□□□□ -1.252e-6■■■■□ 24.4
VPS39-207ENST00000563692 TRAV20A0A0B4J274 112 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 RPS10-NUDT3A0A1W2PQS6 291 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 C15orf61A6NNL5 157 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 H3BP45 60 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 UPK2O00526 184 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 KBTBD11O94819 623 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 NMBP08949 121 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 FGF2P09038 288 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 COX7A1P24310 79 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 REG1BP48304 166 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 ATP5IP56385 69 aaPredicted RBP7.23□□□□□ -1.25
VPS39-207ENST00000563692 HSPE1P61604 102 aaKnown RBP7.23□□□□□ -1.25
VPS39-207ENST00000563692 BLOC1S1P78537 153 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 CLINT1Q14677 625 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 VMA21Q3ZAQ7 101 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 TMEM14EPQ6UXP3 125 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 MOB3BQ86TA1 216 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 VKORC1L1Q8N0U8 176 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 LILRB2Q8N423 598 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 TMEM217Q8N7C4 229 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 OR10P1Q8NGE3 313 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 TMED6Q8WW62 240 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 PINX1Q96BK5 328 aaKnown RBP7.23□□□□□ -1.25
VPS39-207ENST00000563692 SAT2Q96F10 170 aaPredicted RBP7.23□□□□□ -1.25
VPS39-207ENST00000563692 C1orf159Q96HA4 380 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 HARBI1Q96MB7 349 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 ATP5SQ99766 215 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 RNF5Q99942 180 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 WFDC1Q9HC57 220 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 HEYLQ9NQ87 328 aaPredicted RBP7.23□□□□□ -1.25
VPS39-207ENST00000563692 HIF1ANQ9NWT6 349 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 BET1LQ9NYM9 111 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 ZNRD1Q9P1U0 126 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 DPM3Q9P2X0 92 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 FOXA2Q9Y261 457 aaPredicted RBP7.23□□□□□ -1.25
VPS39-207ENST00000563692 ZNF257Q9Y2Q1 563 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 OR51B2Q9Y5P1 312 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 MALRD1Q5VYJ5 2156 aa7.23□□□□□ -1.25
VPS39-207ENST00000563692 ZNF705EA8MWA4 302 aaPredicted RBP7.22□□□□□ -1.25
VPS39-207ENST00000563692 A8MXK9 166 aa7.22□□□□□ -1.25
VPS39-207ENST00000563692 NUDT19A8MXV4 375 aa7.22□□□□□ -1.25
VPS39-207ENST00000563692 FGF16O43320 207 aa7.22□□□□□ -1.25
VPS39-207ENST00000563692 FBXO24O75426 580 aa7.22□□□□□ -1.25
VPS39-207ENST00000563692 IFNA10P01566 189 aa7.22□□□□□ -1.25
VPS39-207ENST00000563692 IGKV1-16P04430 117 aa7.22□□□□□ -1.25
VPS39-207ENST00000563692 ARG1P05089 322 aa7.22□□□□□ -1.25
VPS39-207ENST00000563692 IL6RP08887 468 aaPredicted RBP7.22□□□□□ -1.25
VPS39-207ENST00000563692 METTL15P1P0C7V9 234 aa7.22□□□□□ -1.25
VPS39-207ENST00000563692 SULT1A2P50226 295 aa7.22□□□□□ -1.25
VPS39-207ENST00000563692 LGALS4P56470 323 aa7.22□□□□□ -1.25
VPS39-207ENST00000563692 OR2B8PP59922 312 aa7.22□□□□□ -1.25
VPS39-207ENST00000563692 LMO4P61968 165 aa7.22□□□□□ -1.25
VPS39-207ENST00000563692 RAB11AP62491 216 aa7.22□□□□□ -1.25
VPS39-207ENST00000563692 TMEM267Q0VDI3 215 aaPredicted RBP7.22□□□□□ -1.25
VPS39-207ENST00000563692 COMMD7Q86VX2 200 aa7.22□□□□□ -1.25
VPS39-207ENST00000563692 STPG2Q8N412 459 aa7.22□□□□□ -1.25
VPS39-207ENST00000563692 Q8N7P7 452 aa7.22□□□□□ -1.25
VPS39-207ENST00000563692 OR5B3Q8NH48 314 aa7.22□□□□□ -1.25
VPS39-207ENST00000563692 BSCL2Q96G97 398 aaPredicted RBP7.22□□□□□ -1.25
VPS39-207ENST00000563692 CITED4Q96RK1 184 aa7.22□□□□□ -1.25
VPS39-207ENST00000563692 COMMD5Q9GZQ3 224 aa7.22□□□□□ -1.25
VPS39-207ENST00000563692 MS4A7Q9GZW8 240 aaPredicted RBP7.22□□□□□ -1.25
VPS39-207ENST00000563692 UNKLQ9H9P5 680 aaKnown RBP7.22□□□□□ -1.25
VPS39-207ENST00000563692 COL6A5A8TX70 2615 aa7.21□□□□□ -1.25
VPS39-207ENST00000563692 TRAV3A0A0B4J244 114 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 IGHV1-3A0A0C4DH29 117 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 IGHV2-70DA0A0C4DH43 119 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 SRRM4A7MD48 611 aaKnown RBP7.21□□□□□ -1.26
VPS39-207ENST00000563692 OOSP1A8MZH6 123 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 UMAD1C9J7I0 102 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 FAM157AC9JC47 383 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 LY6LH3BQJ8 138 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 TCF21O43680 179 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 TOX4O94842 621 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 OR8U8P0C7N1 319 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 SPP1P10451 314 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 ZFP36P26651 326 aaKnown RBP7.21□□□□□ -1.26
VPS39-207ENST00000563692 HOXA1P49639 335 aaPredicted RBP7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms