RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 PRSS8Q16651 343 aa11.14□□□□□ -0.63
CLK3-209ENST00000562670 MRGPRG-AS1Q2M3A8 158 aa11.14□□□□□ -0.63
CLK3-209ENST00000562670 LRRC75BQ2VPJ9 315 aa11.14□□□□□ -0.63
CLK3-209ENST00000562670 PPP1R27Q86WC6 154 aa11.14□□□□□ -0.63
CLK3-209ENST00000562670 OR2C3Q8N628 320 aa11.14□□□□□ -0.63
CLK3-209ENST00000562670 DTD1Q8TEA8 209 aa11.14□□□□□ -0.63
CLK3-209ENST00000562670 RITA1Q96K30 269 aa11.14□□□□□ -0.63
CLK3-209ENST00000562670 MAGT1Q9H0U3 335 aa11.14□□□□□ -0.63
CLK3-209ENST00000562670 RBKSQ9H477 322 aa11.14□□□□□ -0.63
CLK3-209ENST00000562670 ZNF430Q9H8G1 570 aaPredicted RBP11.14□□□□□ -0.63
CLK3-209ENST00000562670 C1RLQ9NZP8 487 aa11.14□□□□□ -0.63
CLK3-209ENST00000562670 KIAA1456Q9P272 454 aa11.14□□□□□ -0.63
CLK3-209ENST00000562670 FAM96BQ9Y3D0 163 aa11.14□□□□□ -0.63
CLK3-209ENST00000562670 HSPB11Q9Y547 144 aa11.14□□□□□ -0.63
CLK3-209ENST00000562670 OR51B2Q9Y5P1 312 aa11.14□□□□□ -0.63
CLK3-209ENST00000562670 ZANQ9Y493 2812 aa11.13□□□□□ -0.63
CLK3-209ENST00000562670 FLNAP21333 2647 aaKnown RBP11.13□□□□□ -0.63
CLK3-209ENST00000562670 IFNA17P01571 189 aa11.13□□□□□ -0.63
CLK3-209ENST00000562670 HKR1P10072 659 aa11.13□□□□□ -0.63
CLK3-209ENST00000562670 TMEM11P17152 192 aa11.13□□□□□ -0.63
CLK3-209ENST00000562670 RPL12P30050 165 aaKnown RBP11.13□□□□□ -0.63
CLK3-209ENST00000562670 S100A11P31949 105 aa11.13□□□□□ -0.63
CLK3-209ENST00000562670 ATP5IP56385 69 aaPredicted RBP11.13□□□□□ -0.63
CLK3-209ENST00000562670 C5orf64Q2M2E5 130 aa11.13□□□□□ -0.63
CLK3-209ENST00000562670 TUSC1Q2TAM9 212 aa11.13□□□□□ -0.63
CLK3-209ENST00000562670 STPG2Q8N412 459 aa11.13□□□□□ -0.63
CLK3-209ENST00000562670 OR1L8Q8NGR8 309 aa11.13□□□□□ -0.63
CLK3-209ENST00000562670 SRSF8Q9BRL6 282 aaKnown RBP11.13□□□□□ -0.63
CLK3-209ENST00000562670 COMMD5Q9GZQ3 224 aa11.13□□□□□ -0.63
CLK3-209ENST00000562670 SLC25A31Q9H0C2 315 aa11.13□□□□□ -0.63
CLK3-209ENST00000562670 NDUFA4L2Q9NRX3 87 aa11.13□□□□□ -0.63
CLK3-209ENST00000562670 PLSCR3Q9NRY6 295 aa11.13□□□□□ -0.63
CLK3-209ENST00000562670 METTL1Q9UBP6 276 aaKnown RBP11.13□□□□□ -0.63
CLK3-209ENST00000562670 ZNF469Q96JG9 3925 aaPredicted RBP11.13□□□□□ -0.63
CLK3-209ENST00000562670 IGHV3OR16-10A0A075B7F0 116 aa11.12□□□□□ -0.63
CLK3-209ENST00000562670 MSGN1A6NI15 193 aa11.12□□□□□ -0.63
CLK3-209ENST00000562670 CEBPZOSA8MTT3 80 aa11.12□□□□□ -0.63
CLK3-209ENST00000562670 CNTFRP26992 372 aa11.12□□□□□ -0.63
CLK3-209ENST00000562670 VDAC2P45880 294 aaPredicted RBP11.12□□□□□ -0.63
CLK3-209ENST00000562670 COMPP49747 757 aaPredicted RBP11.12□□□□□ -0.63
CLK3-209ENST00000562670 HES1Q14469 280 aa11.12□□□□□ -0.63
CLK3-209ENST00000562670 SPNS3Q6ZMD2 512 aa11.12□□□□□ -0.63
CLK3-209ENST00000562670 MRPL41Q8IXM3 137 aaKnown RBP11.12□□□□□ -0.63
CLK3-209ENST00000562670 PIFOQ8TCI5 191 aa11.12□□□□□ -0.63
CLK3-209ENST00000562670 CLCC1Q96S66 551 aa11.12□□□□□ -0.63
CLK3-209ENST00000562670 PRDM13Q9H4Q3 707 aa11.12□□□□□ -0.63
CLK3-209ENST00000562670 TPSG1Q9NRR2 321 aa11.12□□□□□ -0.63
CLK3-209ENST00000562670 TMEM160Q9NX00 188 aa11.12□□□□□ -0.63
CLK3-209ENST00000562670 ABCA1O95477 2261 aa11.11□□□□□ -0.63
CLK3-209ENST00000562670 TEX50A0A1B0GTY4 177 aa11.11□□□□□ -0.63
CLK3-209ENST00000562670 A0A1W2PN81 502 aa11.11□□□□□ -0.63
CLK3-209ENST00000562670 TAAR5O14804 337 aa11.11□□□□□ -0.63
CLK3-209ENST00000562670 SMAD7O15105 426 aaKnown RBP11.11□□□□□ -0.63
CLK3-209ENST00000562670 FGF16O43320 207 aa11.11□□□□□ -0.63
CLK3-209ENST00000562670 BCL2L11O43521 198 aa11.11□□□□□ -0.63
CLK3-209ENST00000562670 NXPH3O95157 252 aa11.11□□□□□ -0.63
CLK3-209ENST00000562670 PAX6P26367 422 aa11.11□□□□□ -0.63
CLK3-209ENST00000562670 CHRNA7P36544 502 aa11.11□□□□□ -0.63
CLK3-209ENST00000562670 F2RL1P55085 397 aa11.11□□□□□ -0.63
CLK3-209ENST00000562670 RPP30P78346 268 aaKnown RBP11.11□□□□□ -0.63
CLK3-209ENST00000562670 EWSR1Q01844 656 aaKnown RBP eCLIP11.11□□□□□ -0.633e-7■□□□□ 11.1
CLK3-209ENST00000562670 FBLN7Q53RD9 439 aa11.11□□□□□ -0.63
CLK3-209ENST00000562670 TMEM14EPQ6UXP3 125 aa11.11□□□□□ -0.63
CLK3-209ENST00000562670 TMUB2Q71RG4 321 aa11.11□□□□□ -0.63
CLK3-209ENST00000562670 C16orf82Q7Z2V1 217 aa11.11□□□□□ -0.63
CLK3-209ENST00000562670 HSD17B13Q7Z5P4 300 aaPredicted RBP11.11□□□□□ -0.63
CLK3-209ENST00000562670 STX12Q86Y82 276 aa11.11□□□□□ -0.63
CLK3-209ENST00000562670 TMEM252Q8N6L7 170 aa11.11□□□□□ -0.63
CLK3-209ENST00000562670 ZDHHC16Q969W1 377 aa11.11□□□□□ -0.63
CLK3-209ENST00000562670 ARL6Q9H0F7 186 aa11.11□□□□□ -0.63
CLK3-209ENST00000562670 HIPK2Q9H2X6 1198 aa11.11□□□□□ -0.63
CLK3-209ENST00000562670 FBXL15Q9H469 300 aa11.11□□□□□ -0.63
CLK3-209ENST00000562670 PLEKHA3Q9HB20 300 aa11.11□□□□□ -0.63
CLK3-209ENST00000562670 PSENENQ9NZ42 101 aa11.11□□□□□ -0.63
CLK3-209ENST00000562670 PITPNC1Q9UKF7 332 aa11.11□□□□□ -0.63
CLK3-209ENST00000562670 ITGB1BP2Q9UKP3 347 aa11.11□□□□□ -0.63
CLK3-209ENST00000562670 IGSF23A1L1A6 192 aa11.1□□□□□ -0.63
CLK3-209ENST00000562670 ACTL6BO94805 426 aa11.1□□□□□ -0.63
CLK3-209ENST00000562670 HLA-DRB1P01911 266 aa11.1□□□□□ -0.63
CLK3-209ENST00000562670 IAPPP10997 89 aa11.1□□□□□ -0.63
CLK3-209ENST00000562670 HOXA1P49639 335 aaPredicted RBP11.1□□□□□ -0.63
CLK3-209ENST00000562670 SULT1A1P50225 295 aa11.1□□□□□ -0.63
CLK3-209ENST00000562670 CAV2P51636 162 aa11.1□□□□□ -0.63
CLK3-209ENST00000562670 SSBP2P81877 361 aaPredicted RBP11.1□□□□□ -0.63
CLK3-209ENST00000562670 BSXQ3C1V8 233 aa11.1□□□□□ -0.63
CLK3-209ENST00000562670 Q8N9W7 124 aa11.1□□□□□ -0.63
CLK3-209ENST00000562670 OR5R1Q8NH85 324 aa11.1□□□□□ -0.63
CLK3-209ENST00000562670 RBMXL1Q96E39 390 aaKnown RBP11.1□□□□□ -0.63
CLK3-209ENST00000562670 RBM14Q96PK6 669 aaKnown RBP11.1□□□□□ -0.63
CLK3-209ENST00000562670 GON7Q9BXV9 100 aa11.1□□□□□ -0.63
CLK3-209ENST00000562670 ENY2Q9NPA8 101 aa11.1□□□□□ -0.63
CLK3-209ENST00000562670 MOB4Q9Y3A3 225 aa11.1□□□□□ -0.63
CLK3-209ENST00000562670 U3KQ87 197 aa11.1□□□□□ -0.63
CLK3-209ENST00000562670 KANTRA0A1W2PQU2 76 aa11.09□□□□□ -0.63
CLK3-209ENST00000562670 A6NDX4 124 aa11.09□□□□□ -0.63
CLK3-209ENST00000562670 M0QZK8 103 aa11.09□□□□□ -0.63
CLK3-209ENST00000562670 CD24P25063 80 aa11.09□□□□□ -0.63
CLK3-209ENST00000562670 RPL27AP46776 148 aaKnown RBP11.09□□□□□ -0.63
CLK3-209ENST00000562670 PJVKQ0ZLH3 352 aa11.09□□□□□ -0.63
CLK3-209ENST00000562670 OPCMLQ14982 345 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms