RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 SPNP16150 400 aa7.64□□□□□ -1.19
CLK3-208ENST00000562626 CHRNA7P36544 502 aa7.64□□□□□ -1.19
CLK3-208ENST00000562626 KIAA0141Q14154 515 aaPredicted RBP7.64□□□□□ -1.19
CLK3-208ENST00000562626 C11orf87Q6NUJ2 197 aa7.64□□□□□ -1.19
CLK3-208ENST00000562626 UNQ5815/PRO19632Q6UWF5 114 aa7.64□□□□□ -1.19
CLK3-208ENST00000562626 SLC25A42Q86VD7 318 aa7.64□□□□□ -1.19
CLK3-208ENST00000562626 MMD2Q8IY49 270 aa7.64□□□□□ -1.19
CLK3-208ENST00000562626 CENPSQ8N2Z9 138 aa7.64□□□□□ -1.19
CLK3-208ENST00000562626 MINDY2Q8NBR6 621 aa7.64□□□□□ -1.19
CLK3-208ENST00000562626 OR10W1Q8NGF6 305 aa7.64□□□□□ -1.19
CLK3-208ENST00000562626 OR52B4Q8NGK2 314 aa7.64□□□□□ -1.19
CLK3-208ENST00000562626 CHPT1Q8WUD6 406 aa7.64□□□□□ -1.19
CLK3-208ENST00000562626 GALNT14Q96FL9 552 aa7.64□□□□□ -1.19
CLK3-208ENST00000562626 SLC25A21Q9BQT8 299 aaPredicted RBP7.64□□□□□ -1.19
CLK3-208ENST00000562626 C20orf85Q9H1P6 137 aa7.64□□□□□ -1.19
CLK3-208ENST00000562626 A0A0B4J293 547 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 TEX50A0A1B0GTY4 177 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 A0A1W2PRX2 142 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 CNIH1O95406 144 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 TSPAN15O95858 294 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 IGHG4P01861 327 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 PRH1P02810 166 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 TCRBP04435 133 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 REG1AP05451 166 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 SERPINE2P07093 398 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 HLA-GP17693 338 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 VDAC1P21796 283 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 PSMB8P28062 276 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 S100GP29377 79 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 RPL8P62917 257 aaKnown RBP7.63□□□□□ -1.19
CLK3-208ENST00000562626 TRIM16LQ309B1 348 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 TMEM268Q5VZI3 342 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 LYZL2Q7Z4W2 148 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 NRARPQ7Z6K4 114 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 SGPP2Q8IWX5 399 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 SLC35G3Q8N808 338 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 OR5T1Q8NG75 326 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 MYOZ3Q8TDC0 251 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 GPR146Q96CH1 333 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 TMEM56Q96MV1 263 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 FYTTD1Q96QD9 318 aaKnown RBP7.63□□□□□ -1.19
CLK3-208ENST00000562626 QTRT1Q9BXR0 403 aaKnown RBP7.63□□□□□ -1.19
CLK3-208ENST00000562626 DMRT1Q9Y5R6 373 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 TMEM56-RWDD3S4R434 201 aa7.63□□□□□ -1.19
CLK3-208ENST00000562626 IGLC7A0M8Q6 106 aa7.62□□□□□ -1.19
CLK3-208ENST00000562626 C15orf61A6NNL5 157 aa7.62□□□□□ -1.19
CLK3-208ENST00000562626 CENPXA8MT69 81 aa7.62□□□□□ -1.19
CLK3-208ENST00000562626 SFT2D2O95562 160 aa7.62□□□□□ -1.19
CLK3-208ENST00000562626 VAMP1P23763 118 aa7.62□□□□□ -1.19
CLK3-208ENST00000562626 RPL27AP46776 148 aaKnown RBP7.62□□□□□ -1.19
CLK3-208ENST00000562626 RAB25P57735 213 aa7.62□□□□□ -1.19
CLK3-208ENST00000562626 UBE2MP61081 183 aaKnown RBP7.62□□□□□ -1.19
CLK3-208ENST00000562626 ERVK-16P61578 105 aa7.62□□□□□ -1.19
CLK3-208ENST00000562626 NSUN5P1Q3KNT7 163 aa7.62□□□□□ -1.19
CLK3-208ENST00000562626 AKIRIN2Q53H80 203 aa7.62□□□□□ -1.19
CLK3-208ENST00000562626 TMEM128Q5BJH2 165 aa7.62□□□□□ -1.19
CLK3-208ENST00000562626 SPINK9Q5DT21 86 aa7.62□□□□□ -1.19
CLK3-208ENST00000562626 SHISA2Q6UWI4 295 aa7.62□□□□□ -1.19
CLK3-208ENST00000562626 RNF152Q8N8N0 203 aa7.62□□□□□ -1.19
CLK3-208ENST00000562626 OR4A5Q8NH83 315 aa7.62□□□□□ -1.19
CLK3-208ENST00000562626 VSTM2AQ8TAG5 236 aa7.62□□□□□ -1.19
CLK3-208ENST00000562626 RBPMSQ93062 196 aaKnown RBP7.62□□□□□ -1.19
CLK3-208ENST00000562626 MS4A10Q96PG2 267 aa7.62□□□□□ -1.19
CLK3-208ENST00000562626 SCGB3A2Q96PL1 93 aa7.62□□□□□ -1.19
CLK3-208ENST00000562626 GNB4Q9HAV0 340 aa7.62□□□□□ -1.19
CLK3-208ENST00000562626 TMEM14BQ9NUH8 114 aa7.62□□□□□ -1.19
CLK3-208ENST00000562626 NUDT15Q9NV35 164 aa7.62□□□□□ -1.19
CLK3-208ENST00000562626 FAM240BA0A1B0GVZ2 78 aa7.61□□□□□ -1.19
CLK3-208ENST00000562626 TCRBV4S1A1TA0A5B7 111 aa7.61□□□□□ -1.19
CLK3-208ENST00000562626 C9orf170A2RU37 121 aa7.61□□□□□ -1.19
CLK3-208ENST00000562626 ST8SIA3O43173 380 aa7.61□□□□□ -1.19
CLK3-208ENST00000562626 NXPH3O95157 252 aa7.61□□□□□ -1.19
CLK3-208ENST00000562626 OR4E1P0C645 316 aa7.61□□□□□ -1.19
CLK3-208ENST00000562626 PF4V1P10720 104 aa7.61□□□□□ -1.19
CLK3-208ENST00000562626 MAS1LP35410 378 aa7.61□□□□□ -1.19
CLK3-208ENST00000562626 AKR1C2P52895 323 aa7.61□□□□□ -1.19
CLK3-208ENST00000562626 MFAP2P55001 183 aa7.61□□□□□ -1.19
CLK3-208ENST00000562626 RPL23AP62750 156 aaKnown RBP7.61□□□□□ -1.19
CLK3-208ENST00000562626 SLC35B1P78383 322 aa7.61□□□□□ -1.19
CLK3-208ENST00000562626 WT1-ASQ06250 92 aa7.61□□□□□ -1.19
CLK3-208ENST00000562626 DHRS2Q13268 280 aa7.61□□□□□ -1.19
CLK3-208ENST00000562626 FOXE3Q13461 319 aa7.61□□□□□ -1.19
CLK3-208ENST00000562626 DEFB136Q30KP8 78 aa7.61□□□□□ -1.19
CLK3-208ENST00000562626 NMSQ5H8A3 153 aa7.61□□□□□ -1.19
CLK3-208ENST00000562626 H2BFWTQ7Z2G1 175 aa7.61□□□□□ -1.19
CLK3-208ENST00000562626 CADM3Q8N126 398 aa7.61□□□□□ -1.19
CLK3-208ENST00000562626 DUX3Q96PT4 197 aa7.61□□□□□ -1.19
CLK3-208ENST00000562626 PHB2Q99623 299 aa7.61□□□□□ -1.19
CLK3-208ENST00000562626 SEC22CQ9BRL7 303 aa7.61□□□□□ -1.19
CLK3-208ENST00000562626 ALX4Q9H161 411 aaPredicted RBP7.61□□□□□ -1.19
CLK3-208ENST00000562626 NDUFA4L2Q9NRX3 87 aa7.61□□□□□ -1.19
CLK3-208ENST00000562626 FOXA2Q9Y261 457 aaPredicted RBP7.61□□□□□ -1.19
CLK3-208ENST00000562626 OR51B2Q9Y5P1 312 aa7.61□□□□□ -1.19
CLK3-208ENST00000562626 NOTCH1P46531 2555 aa7.6□□□□□ -1.19
CLK3-208ENST00000562626 MPTX1A8MV57 137 aa7.6□□□□□ -1.19
CLK3-208ENST00000562626 ADAP1O75689 374 aa7.6□□□□□ -1.19
CLK3-208ENST00000562626 B3GALNT1O75752 331 aa7.6□□□□□ -1.19
CLK3-208ENST00000562626 HLA-AP01891 365 aaKnown RBP7.6□□□□□ -1.19
CLK3-208ENST00000562626 RAB9AP51151 201 aa7.6□□□□□ -1.19
CLK3-208ENST00000562626 MECP2P51608 486 aaKnown RBP7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms