RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 LPAR6P43657 344 aa11.98□□□□□ -0.49
VPS39-203ENST00000561797 POU2AF1Q16633 256 aa11.98□□□□□ -0.49
VPS39-203ENST00000561797 C15orf32Q32M92 178 aa11.98□□□□□ -0.49
VPS39-203ENST00000561797 PHLDA2Q53GA4 152 aa11.98□□□□□ -0.49
VPS39-203ENST00000561797 CLVS1Q8IUQ0 354 aaPredicted RBP11.98□□□□□ -0.49
VPS39-203ENST00000561797 CMTM1Q8IZ96 169 aa11.98□□□□□ -0.49
VPS39-203ENST00000561797 OR9G4Q8NGQ1 327 aa11.98□□□□□ -0.49
VPS39-203ENST00000561797 IGHV3-23P01764 117 aa11.97□□□□□ -0.49
VPS39-203ENST00000561797 PSMB6P28072 239 aa11.97□□□□□ -0.49
VPS39-203ENST00000561797 OR2B8PP59922 312 aa11.97□□□□□ -0.49
VPS39-203ENST00000561797 ERVK-16P61578 105 aa11.97□□□□□ -0.49
VPS39-203ENST00000561797 SPCS2Q15005 226 aa11.97□□□□□ -0.49
VPS39-203ENST00000561797 TATDN3Q17R31 274 aa11.97□□□□□ -0.49
VPS39-203ENST00000561797 VAX1Q5SQQ9 334 aa11.97□□□□□ -0.49
VPS39-203ENST00000561797 FCAMRQ8WWV6 532 aa11.97□□□□□ -0.49
VPS39-203ENST00000561797 DGCR14Q96DF8 476 aaKnown RBP11.97□□□□□ -0.49
VPS39-203ENST00000561797 ASCL2Q99929 193 aa11.97□□□□□ -0.49
VPS39-203ENST00000561797 COMMD5Q9GZQ3 224 aa11.97□□□□□ -0.49
VPS39-203ENST00000561797 COMMD9Q9P000 198 aa11.97□□□□□ -0.49
VPS39-203ENST00000561797 KLK11Q9UBX7 282 aa11.97□□□□□ -0.49
VPS39-203ENST00000561797 SMAD5-AS1Q9Y6J3 95 aa11.97□□□□□ -0.49
VPS39-203ENST00000561797 S4R3C0 116 aa11.97□□□□□ -0.49
VPS39-203ENST00000561797 COL7A1Q02388 2944 aa11.96□□□□□ -0.49
VPS39-203ENST00000561797 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.96□□□□□ -0.49
VPS39-203ENST00000561797 PPP5D1E7EU14 171 aa11.96□□□□□ -0.49
VPS39-203ENST00000561797 BMPR1BO00238 502 aa11.96□□□□□ -0.49
VPS39-203ENST00000561797 RGS5O15539 181 aa11.96□□□□□ -0.49
VPS39-203ENST00000561797 NDUFB8O95169 186 aa11.96□□□□□ -0.49
VPS39-203ENST00000561797 DHFRP00374 187 aa11.96□□□□□ -0.49
VPS39-203ENST00000561797 KRASP01116 189 aa11.96□□□□□ -0.49
VPS39-203ENST00000561797 CRYGCP07315 174 aa11.96□□□□□ -0.49
VPS39-203ENST00000561797 DEFA4P12838 97 aa11.96□□□□□ -0.49
VPS39-203ENST00000561797 CTRB1P17538 263 aa11.96□□□□□ -0.49
VPS39-203ENST00000561797 G6PCP35575 357 aa11.96□□□□□ -0.49
VPS39-203ENST00000561797 ZNF585BQ52M93 769 aa11.96□□□□□ -0.49
VPS39-203ENST00000561797 CTRB2Q6GPI1 263 aa11.96□□□□□ -0.49
VPS39-203ENST00000561797 LPCAT3Q6P1A2 487 aa11.96□□□□□ -0.49
VPS39-203ENST00000561797 OR52I2Q8NH67 350 aa11.96□□□□□ -0.49
VPS39-203ENST00000561797 FANCD2OSQ96PS1 177 aa11.96□□□□□ -0.49
VPS39-203ENST00000561797 MARCH11A6NNE9 402 aa11.95□□□□□ -0.5
VPS39-203ENST00000561797 IGLV1-51P01701 117 aa11.95□□□□□ -0.5
VPS39-203ENST00000561797 IFNA6P05013 189 aa11.95□□□□□ -0.5
VPS39-203ENST00000561797 S100GP29377 79 aa11.95□□□□□ -0.5
VPS39-203ENST00000561797 IL34Q6ZMJ4 242 aa11.95□□□□□ -0.5
VPS39-203ENST00000561797 OR10W1Q8NGF6 305 aa11.95□□□□□ -0.5
VPS39-203ENST00000561797 ABHD1Q96SE0 405 aa11.95□□□□□ -0.5
VPS39-203ENST00000561797 MIXL1Q9H2W2 232 aa11.95□□□□□ -0.5
VPS39-203ENST00000561797 NSG2Q9Y328 171 aa11.95□□□□□ -0.5
VPS39-203ENST00000561797 CTDSP2O14595 271 aa11.94□□□□□ -0.5
VPS39-203ENST00000561797 HLA-AP01891 365 aaKnown RBP11.94□□□□□ -0.5
VPS39-203ENST00000561797 CD3DP04234 171 aa11.94□□□□□ -0.5
VPS39-203ENST00000561797 CSN3P07498 182 aa11.94□□□□□ -0.5
VPS39-203ENST00000561797 HIST1H1BP16401 226 aaKnown RBP11.94□□□□□ -0.5
VPS39-203ENST00000561797 RNASE10Q5GAN6 216 aaKnown RBP11.94□□□□□ -0.5
VPS39-203ENST00000561797 CLEC19AQ6UXS0 136 aa11.94□□□□□ -0.5
VPS39-203ENST00000561797 TBC1D26Q86UD7 250 aa11.94□□□□□ -0.5
VPS39-203ENST00000561797 SLC38A6Q8IZM9 456 aa11.94□□□□□ -0.5
VPS39-203ENST00000561797 TEX50A0A1B0GTY4 177 aa11.93□□□□□ -0.5
VPS39-203ENST00000561797 IGLC7A0M8Q6 106 aa11.93□□□□□ -0.5
VPS39-203ENST00000561797 SNAPC5O75971 98 aa11.93□□□□□ -0.5
VPS39-203ENST00000561797 PGAM2P15259 253 aa11.93□□□□□ -0.5
VPS39-203ENST00000561797 UCP3P55916 312 aa11.93□□□□□ -0.5
VPS39-203ENST00000561797 LAX1Q8IWV1 398 aa11.93□□□□□ -0.5
VPS39-203ENST00000561797 RAB2BQ8WUD1 216 aa11.93□□□□□ -0.5
VPS39-203ENST00000561797 EEF1AKMT3Q96AZ1 226 aa11.93□□□□□ -0.5
VPS39-203ENST00000561797 HINT2Q9BX68 163 aa11.93□□□□□ -0.5
VPS39-203ENST00000561797 QTRT1Q9BXR0 403 aaKnown RBP11.93□□□□□ -0.5
VPS39-203ENST00000561797 PEMTQ9UBM1 199 aa11.93□□□□□ -0.5
VPS39-203ENST00000561797 MTFP1Q9UDX5 166 aa11.93□□□□□ -0.5
VPS39-203ENST00000561797 IGLV11-55A0A075B6I3 123 aa11.92□□□□□ -0.5
VPS39-203ENST00000561797 GGCTO75223 188 aaKnown RBP11.92□□□□□ -0.5
VPS39-203ENST00000561797 OR2C1O95371 312 aa11.92□□□□□ -0.5
VPS39-203ENST00000561797 NHLRC4P0CG21 123 aaPredicted RBP11.92□□□□□ -0.5
VPS39-203ENST00000561797 TRAPPC2P0DI81 140 aa11.92□□□□□ -0.5
VPS39-203ENST00000561797 TRAPPC2BP0DI82 140 aa11.92□□□□□ -0.5
VPS39-203ENST00000561797 PI3P19957 117 aa11.92□□□□□ -0.5
VPS39-203ENST00000561797 ARL3P36405 182 aa11.92□□□□□ -0.5
VPS39-203ENST00000561797 FAM209BQ5JX69 171 aa11.92□□□□□ -0.5
VPS39-203ENST00000561797 OR1L8Q8NGR8 309 aa11.92□□□□□ -0.5
VPS39-203ENST00000561797 C15orf40Q8WUR7 153 aa11.92□□□□□ -0.5
VPS39-203ENST00000561797 CCDC140Q96MF4 163 aa11.92□□□□□ -0.5
VPS39-203ENST00000561797 OR51B2Q9Y5P1 312 aa11.92□□□□□ -0.5
VPS39-203ENST00000561797 DMRT1Q9Y5R6 373 aa11.92□□□□□ -0.5
VPS39-203ENST00000561797 MFSD2BA6NFX1 497 aa11.91□□□□□ -0.5
VPS39-203ENST00000561797 H0Y980 276 aa11.91□□□□□ -0.5
VPS39-203ENST00000561797 TPPPO94811 219 aa11.91□□□□□ -0.5
VPS39-203ENST00000561797 FGF2P09038 288 aa11.91□□□□□ -0.5
VPS39-203ENST00000561797 OR13C7P0DN81 318 aa11.91□□□□□ -0.5
VPS39-203ENST00000561797 TMBIM6P55061 237 aa11.91□□□□□ -0.5
VPS39-203ENST00000561797 KLK9Q2XQG4 91 aa11.91□□□□□ -0.5
VPS39-203ENST00000561797 TMEM229BQ8NBD8 167 aa11.91□□□□□ -0.5
VPS39-203ENST00000561797 OR4D10Q8NGI6 311 aa11.91□□□□□ -0.5
VPS39-203ENST00000561797 DYNC2LI1Q8TCX1 351 aa11.91□□□□□ -0.5
VPS39-203ENST00000561797 SRSF8Q9BRL6 282 aaKnown RBP11.91□□□□□ -0.5
VPS39-203ENST00000561797 KLK9Q9UKQ9 250 aa11.91□□□□□ -0.5
VPS39-203ENST00000561797 IZUMO1RA6ND01 250 aa11.9□□□□□ -0.5
VPS39-203ENST00000561797 GABARAPH6UMI1 98 aa11.9□□□□□ -0.5
VPS39-203ENST00000561797 NOL3O60936 208 aaKnown RBP11.9□□□□□ -0.5
VPS39-203ENST00000561797 RAB3DO95716 219 aa11.9□□□□□ -0.5
VPS39-203ENST00000561797 SERPINE2P07093 398 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms