RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 TEX22C9J3V5 150 aa17.05■□□□□ 0.32
SNX1-210ENST00000560260 FBXO24O75426 580 aa17.05■□□□□ 0.32
SNX1-210ENST00000560260 OPN1MWP04001 364 aa17.05■□□□□ 0.32
SNX1-210ENST00000560260 APELAP0DMC3 54 aa17.05■□□□□ 0.32
SNX1-210ENST00000560260 OPN1MW2P0DN77 364 aa17.05■□□□□ 0.32
SNX1-210ENST00000560260 OPN1MW3P0DN78 364 aa17.05■□□□□ 0.32
SNX1-210ENST00000560260 VAMP1P23763 118 aa17.05■□□□□ 0.32
SNX1-210ENST00000560260 AKR1C2P52895 323 aa17.05■□□□□ 0.32
SNX1-210ENST00000560260 ANKRD55Q3KP44 614 aa17.05■□□□□ 0.32
SNX1-210ENST00000560260 LCNL1Q6ZST4 164 aa17.05■□□□□ 0.32
SNX1-210ENST00000560260 MINDY2Q8NBR6 621 aa17.05■□□□□ 0.32
SNX1-210ENST00000560260 RBPMSQ93062 196 aaKnown RBP17.05■□□□□ 0.32
SNX1-210ENST00000560260 NUDT15Q9NV35 164 aa17.05■□□□□ 0.32
SNX1-210ENST00000560260 KCNIP3Q9Y2W7 256 aa17.05■□□□□ 0.32
SNX1-210ENST00000560260 TET2Q6N021 2002 aaPredicted RBP17.05■□□□□ 0.32
SNX1-210ENST00000560260 MSGN1A6NI15 193 aa17.04■□□□□ 0.32
SNX1-210ENST00000560260 ACTL6BO94805 426 aa17.04■□□□□ 0.32
SNX1-210ENST00000560260 MAS1LP35410 378 aa17.04■□□□□ 0.32
SNX1-210ENST00000560260 RPL27AP46776 148 aaKnown RBP17.04■□□□□ 0.32
SNX1-210ENST00000560260 UBE2MP61081 183 aaKnown RBP17.04■□□□□ 0.32
SNX1-210ENST00000560260 UNQ5815/PRO19632Q6UWF5 114 aa17.04■□□□□ 0.32
SNX1-210ENST00000560260 H2BFWTQ7Z2G1 175 aa17.04■□□□□ 0.32
SNX1-210ENST00000560260 NRARPQ7Z6K4 114 aa17.04■□□□□ 0.32
SNX1-210ENST00000560260 SLC35G3Q8N808 338 aa17.04■□□□□ 0.32
SNX1-210ENST00000560260 A0A1W2PN81 502 aa17.03■□□□□ 0.32
SNX1-210ENST00000560260 C9orf170A2RU37 121 aa17.03■□□□□ 0.32
SNX1-210ENST00000560260 HMX3A6NHT5 357 aa17.03■□□□□ 0.32
SNX1-210ENST00000560260 C15orf61A6NNL5 157 aa17.03■□□□□ 0.32
SNX1-210ENST00000560260 IGHG4P01861 327 aa17.03■□□□□ 0.32
SNX1-210ENST00000560260 OR4E1P0C645 316 aa17.03■□□□□ 0.32
SNX1-210ENST00000560260 CHRNA7P36544 502 aa17.03■□□□□ 0.32
SNX1-210ENST00000560260 ZNF695Q8IW36 515 aa17.03■□□□□ 0.32
SNX1-210ENST00000560260 CASTOR1Q8WTX7 329 aa17.03■□□□□ 0.32
SNX1-210ENST00000560260 IL22RA2Q969J5 263 aa17.03■□□□□ 0.32
SNX1-210ENST00000560260 CITED2Q99967 270 aaPredicted RBP17.03■□□□□ 0.32
SNX1-210ENST00000560260 IGLV1-40P01703 118 aa17.02■□□□□ 0.32
SNX1-210ENST00000560260 FGF2P09038 288 aa17.02■□□□□ 0.32
SNX1-210ENST00000560260 ANXA3P12429 323 aa17.02■□□□□ 0.32
SNX1-210ENST00000560260 SLC35B1P78383 322 aa17.02■□□□□ 0.32
SNX1-210ENST00000560260 CD83Q01151 205 aa17.02■□□□□ 0.32
SNX1-210ENST00000560260 DHRS2Q13268 280 aa17.02■□□□□ 0.32
SNX1-210ENST00000560260 AKIRIN2Q53H80 203 aa17.02■□□□□ 0.32
SNX1-210ENST00000560260 SHISA2Q6UWI4 295 aa17.02■□□□□ 0.32
SNX1-210ENST00000560260 Q6ZRM9 215 aa17.02■□□□□ 0.32
SNX1-210ENST00000560260 ENKURQ8TC29 256 aa17.02■□□□□ 0.32
SNX1-210ENST00000560260 FYTTD1Q96QD9 318 aaKnown RBP17.02■□□□□ 0.32
SNX1-210ENST00000560260 PHB2Q99623 299 aa17.02■□□□□ 0.32
SNX1-210ENST00000560260 TMEM14BQ9NUH8 114 aa17.02■□□□□ 0.32
SNX1-210ENST00000560260 FOXA2Q9Y261 457 aaPredicted RBP17.02■□□□□ 0.32
SNX1-210ENST00000560260 A0A0B4J293 547 aa17.01■□□□□ 0.31
SNX1-210ENST00000560260 TEX50A0A1B0GTY4 177 aa17.01■□□□□ 0.31
SNX1-210ENST00000560260 ADARB2-AS1A8MUL3 147 aa17.01■□□□□ 0.31
SNX1-210ENST00000560260 SNAPC5O75971 98 aa17.01■□□□□ 0.31
SNX1-210ENST00000560260 HLA-AP01891 365 aaKnown RBP17.01■□□□□ 0.31
SNX1-210ENST00000560260 C19orf35Q6ZS72 473 aa17.01■□□□□ 0.31
SNX1-210ENST00000560260 LYZL2Q7Z4W2 148 aa17.01■□□□□ 0.31
SNX1-210ENST00000560260 LYG2Q86SG7 212 aa17.01■□□□□ 0.31
SNX1-210ENST00000560260 LGI3Q8N145 548 aa17.01■□□□□ 0.31
SNX1-210ENST00000560260 OR4X2Q8NGF9 303 aa17.01■□□□□ 0.31
SNX1-210ENST00000560260 OR52B4Q8NGK2 314 aa17.01■□□□□ 0.31
SNX1-210ENST00000560260 GPR146Q96CH1 333 aa17.01■□□□□ 0.31
SNX1-210ENST00000560260 GON7Q9BXV9 100 aa17.01■□□□□ 0.31
SNX1-210ENST00000560260 KLK15Q9H2R5 256 aa17.01■□□□□ 0.31
SNX1-210ENST00000560260 OR51B2Q9Y5P1 312 aa17.01■□□□□ 0.31
SNX1-210ENST00000560260 ATG12O94817 140 aa17■□□□□ 0.31
SNX1-210ENST00000560260 H2AFB2P0C5Z0 115 aa17■□□□□ 0.31
SNX1-210ENST00000560260 AREGP15514 252 aa17■□□□□ 0.31
SNX1-210ENST00000560260 SPNP16150 400 aa17■□□□□ 0.31
SNX1-210ENST00000560260 PSMB8P28062 276 aa17■□□□□ 0.31
SNX1-210ENST00000560260 MECP2P51608 486 aaKnown RBP17■□□□□ 0.31
SNX1-210ENST00000560260 RAB25P57735 213 aa17■□□□□ 0.31
SNX1-210ENST00000560260 DEFA1P59665 94 aa17■□□□□ 0.31
SNX1-210ENST00000560260 DEFA3P59666 94 aa17■□□□□ 0.31
SNX1-210ENST00000560260 TMEM267Q0VDI3 215 aaPredicted RBP17■□□□□ 0.31
SNX1-210ENST00000560260 FOXE3Q13461 319 aa17■□□□□ 0.31
SNX1-210ENST00000560260 RNF152Q8N8N0 203 aa17■□□□□ 0.31
SNX1-210ENST00000560260 LRTM2Q8N967 370 aa17■□□□□ 0.31
SNX1-210ENST00000560260 DUSP18Q8NEJ0 188 aa17■□□□□ 0.31
SNX1-210ENST00000560260 RRNAD1Q96FB5 475 aaKnown RBP17■□□□□ 0.31
SNX1-210ENST00000560260 SPIN2AQ99865 258 aa17■□□□□ 0.31
SNX1-210ENST00000560260 SPIN2BQ9BPZ2 258 aa17■□□□□ 0.31
SNX1-210ENST00000560260 QTRT1Q9BXR0 403 aaKnown RBP17■□□□□ 0.31
SNX1-210ENST00000560260 COMMD5Q9GZQ3 224 aa17■□□□□ 0.31
SNX1-210ENST00000560260 PRNDQ9UKY0 176 aa17■□□□□ 0.31
SNX1-210ENST00000560260 A0A0B4J2A0 478 aa16.99■□□□□ 0.31
SNX1-210ENST00000560260 RPLP1P05386 114 aaKnown RBP16.99■□□□□ 0.31
SNX1-210ENST00000560260 ELANEP08246 267 aa16.99■□□□□ 0.31
SNX1-210ENST00000560260 SRPXP78539 464 aa16.99■□□□□ 0.31
SNX1-210ENST00000560260 C4orf46Q504U0 113 aa16.99■□□□□ 0.31
SNX1-210ENST00000560260 NMSQ5H8A3 153 aa16.99■□□□□ 0.31
SNX1-210ENST00000560260 TEX38Q6PEX7 206 aa16.99■□□□□ 0.31
SNX1-210ENST00000560260 COMMD1Q8N668 190 aa16.99■□□□□ 0.31
SNX1-210ENST00000560260 OR5T1Q8NG75 326 aa16.99■□□□□ 0.31
SNX1-210ENST00000560260 RNASE11Q8TAA1 199 aaKnown RBP16.99■□□□□ 0.31
SNX1-210ENST00000560260 FAM110DQ8TAY7 271 aaPredicted RBP16.99■□□□□ 0.31
SNX1-210ENST00000560260 MYOZ3Q8TDC0 251 aa16.99■□□□□ 0.31
SNX1-210ENST00000560260 SEC22CQ9BRL7 303 aa16.99■□□□□ 0.31
SNX1-210ENST00000560260 ALX4Q9H161 411 aaPredicted RBP16.99■□□□□ 0.31
SNX1-210ENST00000560260 SHPKQ9UHJ6 478 aa16.99■□□□□ 0.31
SNX1-210ENST00000560260 IGLC7A0M8Q6 106 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms