RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 FGL1Q08830 312 aa7.32□□□□□ -1.24
LDLR-211ENST00000560173 CATR1Q13166 79 aa7.32□□□□□ -1.24
LDLR-211ENST00000560173 PRSS8Q16651 343 aa7.32□□□□□ -1.24
LDLR-211ENST00000560173 ECSCRQ19T08 205 aa7.32□□□□□ -1.24
LDLR-211ENST00000560173 CXorf66Q5JRM2 361 aaPredicted RBP7.32□□□□□ -1.24
LDLR-211ENST00000560173 LCNL1Q6ZST4 164 aa7.32□□□□□ -1.24
LDLR-211ENST00000560173 C18orf65Q6ZTR6 163 aa7.32□□□□□ -1.24
LDLR-211ENST00000560173 LYG2Q86SG7 212 aa7.32□□□□□ -1.24
LDLR-211ENST00000560173 LHFPL1Q86WI0 220 aa7.32□□□□□ -1.24
LDLR-211ENST00000560173 TEX45Q8NA69 505 aa7.32□□□□□ -1.24
LDLR-211ENST00000560173 COQ8AQ8NI60 647 aa7.32□□□□□ -1.24
LDLR-211ENST00000560173 MYOZ3Q8TDC0 251 aa7.32□□□□□ -1.24
LDLR-211ENST00000560173 ABHD5Q8WTS1 349 aa7.32□□□□□ -1.24
LDLR-211ENST00000560173 ZNF486Q96H40 463 aaPredicted RBP7.32□□□□□ -1.24
LDLR-211ENST00000560173 SEC22CQ9BRL7 303 aa7.32□□□□□ -1.24
LDLR-211ENST00000560173 FAM103A1Q9BTL3 118 aaKnown RBP7.32□□□□□ -1.24
LDLR-211ENST00000560173 ZFP57Q9NU63 452 aa7.32□□□□□ -1.24
LDLR-211ENST00000560173 MGAT4CQ9UBM8 478 aa7.32□□□□□ -1.24
LDLR-211ENST00000560173 GPR132Q9UNW8 380 aa7.32□□□□□ -1.24
LDLR-211ENST00000560173 GPR31O00270 319 aa7.31□□□□□ -1.24
LDLR-211ENST00000560173 SOX15O60248 233 aa7.31□□□□□ -1.24
LDLR-211ENST00000560173 RAMP3O60896 148 aa7.31□□□□□ -1.24
LDLR-211ENST00000560173 OR2A4O95047 310 aa7.31□□□□□ -1.24
LDLR-211ENST00000560173 HLA-AP01891 365 aaKnown RBP7.31□□□□□ -1.24
LDLR-211ENST00000560173 CTSDP07339 412 aaPredicted RBP7.31□□□□□ -1.24
LDLR-211ENST00000560173 PF4V1P10720 104 aa7.31□□□□□ -1.24
LDLR-211ENST00000560173 PGAM2P15259 253 aa7.31□□□□□ -1.24
LDLR-211ENST00000560173 HLA-GP17693 338 aa7.31□□□□□ -1.24
LDLR-211ENST00000560173 GNB1P62873 340 aa7.31□□□□□ -1.24
LDLR-211ENST00000560173 CD300CQ08708 224 aa7.31□□□□□ -1.24
LDLR-211ENST00000560173 DHRS2Q13268 280 aa7.31□□□□□ -1.24
LDLR-211ENST00000560173 FXYD3Q14802 87 aa7.31□□□□□ -1.24
LDLR-211ENST00000560173 AADACL3Q5VUY0 350 aa7.31□□□□□ -1.24
LDLR-211ENST00000560173 ETV3LQ6ZN32 361 aa7.31□□□□□ -1.24
LDLR-211ENST00000560173 NBEAL2Q6ZNJ1 2754 aa7.31□□□□□ -1.24
LDLR-211ENST00000560173 SPAG16Q8N0X2 631 aa7.31□□□□□ -1.24
LDLR-211ENST00000560173 TCTEX1D1Q8N7M0 179 aa7.31□□□□□ -1.24
LDLR-211ENST00000560173 CCDC71LQ8N9Z2 235 aa7.31□□□□□ -1.24
LDLR-211ENST00000560173 ZBTB8BQ8NAP8 495 aaPredicted RBP7.31□□□□□ -1.24
LDLR-211ENST00000560173 OR11H7Q8NGC8 314 aa7.31□□□□□ -1.24
LDLR-211ENST00000560173 OR51H1Q8NH63 302 aa7.31□□□□□ -1.24
LDLR-211ENST00000560173 GRPEL2Q8TAA5 225 aa7.31□□□□□ -1.24
LDLR-211ENST00000560173 MITD1Q8WV92 249 aa7.31□□□□□ -1.24
LDLR-211ENST00000560173 FYTTD1Q96QD9 318 aaKnown RBP7.31□□□□□ -1.24
LDLR-211ENST00000560173 OR2A7Q96R45 310 aa7.31□□□□□ -1.24
LDLR-211ENST00000560173 ZNF430Q9H8G1 570 aaPredicted RBP7.31□□□□□ -1.24
LDLR-211ENST00000560173 PAIP2BQ9ULR5 123 aaKnown RBP7.31□□□□□ -1.24
LDLR-211ENST00000560173 FOXA2Q9Y261 457 aaPredicted RBP7.31□□□□□ -1.24
LDLR-211ENST00000560173 VSIG4Q9Y279 399 aa7.31□□□□□ -1.24
LDLR-211ENST00000560173 KCNIP3Q9Y2W7 256 aa7.31□□□□□ -1.24
LDLR-211ENST00000560173 DNAH3Q8TD57 4116 aa7.3□□□□□ -1.24
LDLR-211ENST00000560173 A0A1W2PN81 502 aa7.3□□□□□ -1.24
LDLR-211ENST00000560173 C9orf170A2RU37 121 aa7.3□□□□□ -1.24
LDLR-211ENST00000560173 NUDT19A8MXV4 375 aa7.3□□□□□ -1.24
LDLR-211ENST00000560173 PGLYRP1O75594 196 aaPredicted RBP7.3□□□□□ -1.24
LDLR-211ENST00000560173 KBTBD11O94819 623 aa7.3□□□□□ -1.24
LDLR-211ENST00000560173 CNIH1O95406 144 aa7.3□□□□□ -1.24
LDLR-211ENST00000560173 HRASP01112 189 aa7.3□□□□□ -1.24
LDLR-211ENST00000560173 CHRNA7P36544 502 aa7.3□□□□□ -1.24
LDLR-211ENST00000560173 CDX1P47902 265 aaPredicted RBP7.3□□□□□ -1.24
LDLR-211ENST00000560173 DHODHQ02127 395 aa7.3□□□□□ -1.24
LDLR-211ENST00000560173 TMEM267Q0VDI3 215 aaPredicted RBP7.3□□□□□ -1.24
LDLR-211ENST00000560173 KIAA0141Q14154 515 aaPredicted RBP7.3□□□□□ -1.24
LDLR-211ENST00000560173 AKIRIN2Q53H80 203 aa7.3□□□□□ -1.24
LDLR-211ENST00000560173 UNQ5815/PRO19632Q6UWF5 114 aa7.3□□□□□ -1.24
LDLR-211ENST00000560173 C8orf86Q6ZUL3 223 aa7.3□□□□□ -1.24
LDLR-211ENST00000560173 ZNF695Q8IW36 515 aa7.3□□□□□ -1.24
LDLR-211ENST00000560173 SGPP2Q8IWX5 399 aa7.3□□□□□ -1.24
LDLR-211ENST00000560173 CMTM1Q8IZ96 169 aa7.3□□□□□ -1.24
LDLR-211ENST00000560173 SLC38A6Q8IZM9 456 aa7.3□□□□□ -1.24
LDLR-211ENST00000560173 VKORC1L1Q8N0U8 176 aa7.3□□□□□ -1.24
LDLR-211ENST00000560173 PUSL1Q8N0Z8 303 aaKnown RBP7.3□□□□□ -1.24
LDLR-211ENST00000560173 KLHL30-AS1Q8NEE0 82 aa7.3□□□□□ -1.24
LDLR-211ENST00000560173 LFNGQ8NES3 379 aa7.3□□□□□ -1.24
LDLR-211ENST00000560173 TMEM167AQ8TBQ9 72 aa7.3□□□□□ -1.24
LDLR-211ENST00000560173 MARCH1Q8TCQ1 289 aa7.3□□□□□ -1.24
LDLR-211ENST00000560173 CD300LFQ8TDQ1 290 aa7.3□□□□□ -1.24
LDLR-211ENST00000560173 RHOVQ96L33 236 aa7.3□□□□□ -1.24
LDLR-211ENST00000560173 RSRP1Q9BUV0 290 aa7.3□□□□□ -1.24
LDLR-211ENST00000560173 KLK15Q9H2R5 256 aa7.3□□□□□ -1.24
LDLR-211ENST00000560173 B3GALNT1O75752 331 aa7.29□□□□□ -1.24
LDLR-211ENST00000560173 S1PR2O95136 353 aa7.29□□□□□ -1.24
LDLR-211ENST00000560173 SFT2D2O95562 160 aa7.29□□□□□ -1.24
LDLR-211ENST00000560173 AKR1C4P17516 323 aa7.29□□□□□ -1.24
LDLR-211ENST00000560173 VAMP1P23763 118 aa7.29□□□□□ -1.24
LDLR-211ENST00000560173 F2RP25116 425 aa7.29□□□□□ -1.24
LDLR-211ENST00000560173 RAB9AP51151 201 aa7.29□□□□□ -1.24
LDLR-211ENST00000560173 SRPXP78539 464 aa7.29□□□□□ -1.24
LDLR-211ENST00000560173 TNXAQ16473 311 aa7.29□□□□□ -1.24
LDLR-211ENST00000560173 POU2AF1Q16633 256 aa7.29□□□□□ -1.24
LDLR-211ENST00000560173 PHLDA2Q53GA4 152 aa7.29□□□□□ -1.24
LDLR-211ENST00000560173 C10orf55Q5SWW7 151 aa7.29□□□□□ -1.24
LDLR-211ENST00000560173 ASPHD1Q5U4P2 390 aa7.29□□□□□ -1.24
LDLR-211ENST00000560173 MMD2Q8IY49 270 aa7.29□□□□□ -1.24
LDLR-211ENST00000560173 OR5M8Q8NGP6 311 aa7.29□□□□□ -1.24
LDLR-211ENST00000560173 OR2T35Q8NGX2 323 aa7.29□□□□□ -1.24
LDLR-211ENST00000560173 VSTM2AQ8TAG5 236 aa7.29□□□□□ -1.24
LDLR-211ENST00000560173 SRSF12Q8WXF0 261 aaKnown RBP7.29□□□□□ -1.24
LDLR-211ENST00000560173 PLEKHA2Q9HB19 425 aa7.29□□□□□ -1.24
LDLR-211ENST00000560173 COMMD9Q9P000 198 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms