RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 M0QZK8 103 aa13.45□□□□□ -0.26
SNX1-203ENST00000558040 C1QBP02746 253 aa13.45□□□□□ -0.26
SNX1-203ENST00000558040 HSPE1P61604 102 aaKnown RBP13.45□□□□□ -0.26
SNX1-203ENST00000558040 PDLIM3Q53GG5 364 aaPredicted RBP13.45□□□□□ -0.26
SNX1-203ENST00000558040 C11orf87Q6NUJ2 197 aa13.45□□□□□ -0.26
SNX1-203ENST00000558040 RBMS3Q6XE24 437 aaKnown RBP13.45□□□□□ -0.26
SNX1-203ENST00000558040 ZNF48Q96MX3 618 aaPredicted RBP13.45□□□□□ -0.26
SNX1-203ENST00000558040 CLCC1Q96S66 551 aa13.45□□□□□ -0.26
SNX1-203ENST00000558040 RASL11BQ9BPW5 248 aa13.45□□□□□ -0.26
SNX1-203ENST00000558040 AKAP9Q99996 3911 aa13.45□□□□□ -0.26
SNX1-203ENST00000558040 FLNBO75369 2602 aaKnown RBP13.44□□□□□ -0.26
SNX1-203ENST00000558040 MAP1AP78559 2803 aaPredicted RBP13.44□□□□□ -0.26
SNX1-203ENST00000558040 TRAV14DV4A0A0A6YYC5 116 aa13.44□□□□□ -0.26
SNX1-203ENST00000558040 CEBPZOSA8MTT3 80 aa13.44□□□□□ -0.26
SNX1-203ENST00000558040 L7N2F9 121 aa13.44□□□□□ -0.26
SNX1-203ENST00000558040 FGF16O43320 207 aa13.44□□□□□ -0.26
SNX1-203ENST00000558040 SYNGR2O43760 224 aa13.44□□□□□ -0.26
SNX1-203ENST00000558040 SSSCA1O60232 199 aa13.44□□□□□ -0.26
SNX1-203ENST00000558040 DEDDO75618 318 aa13.44□□□□□ -0.26
SNX1-203ENST00000558040 LY86O95711 162 aa13.44□□□□□ -0.26
SNX1-203ENST00000558040 IGHV4-59P01825 116 aa13.44□□□□□ -0.26
SNX1-203ENST00000558040 SRD5A1P18405 259 aa13.44□□□□□ -0.26
SNX1-203ENST00000558040 POLR2GP62487 172 aaKnown RBP eCLIP13.44□□□□□ -0.26
SNX1-203ENST00000558040 VAMP2P63027 116 aa13.44□□□□□ -0.26
SNX1-203ENST00000558040 TNXAQ16473 311 aa13.44□□□□□ -0.26
SNX1-203ENST00000558040 LY6EQ16553 131 aa13.44□□□□□ -0.26
SNX1-203ENST00000558040 PRSS54Q6PEW0 395 aa13.44□□□□□ -0.26
SNX1-203ENST00000558040 TMEM219Q86XT9 240 aa13.44□□□□□ -0.26
SNX1-203ENST00000558040 Q8N9W7 124 aa13.44□□□□□ -0.26
SNX1-203ENST00000558040 OR1L8Q8NGR8 309 aa13.44□□□□□ -0.26
SNX1-203ENST00000558040 CIB3Q96Q77 187 aaPredicted RBP13.44□□□□□ -0.26
SNX1-203ENST00000558040 RAB40CQ96S21 281 aa13.44□□□□□ -0.26
SNX1-203ENST00000558040 MAGT1Q9H0U3 335 aa13.44□□□□□ -0.26
SNX1-203ENST00000558040 ENY2Q9NPA8 101 aa13.44□□□□□ -0.26
SNX1-203ENST00000558040 RCL1Q9Y2P8 373 aaKnown RBP13.44□□□□□ -0.26
SNX1-203ENST00000558040 CSPG4Q6UVK1 2322 aa13.44□□□□□ -0.26
SNX1-203ENST00000558040 TEX50A0A1B0GTY4 177 aa13.43□□□□□ -0.26
SNX1-203ENST00000558040 CA2P00918 260 aa13.43□□□□□ -0.26
SNX1-203ENST00000558040 HNRNPCP07910 306 aaKnown RBP eCLIP13.43□□□□□ -0.26
SNX1-203ENST00000558040 SLC25A4P12235 298 aa13.43□□□□□ -0.26
SNX1-203ENST00000558040 HOXA1P49639 335 aaPredicted RBP13.43□□□□□ -0.26
SNX1-203ENST00000558040 GNB1P62873 340 aa13.43□□□□□ -0.26
SNX1-203ENST00000558040 PRCDQ00LT1 54 aa13.43□□□□□ -0.26
SNX1-203ENST00000558040 PJVKQ0ZLH3 352 aa13.43□□□□□ -0.26
SNX1-203ENST00000558040 TUSC1Q2TAM9 212 aa13.43□□□□□ -0.26
SNX1-203ENST00000558040 Q5BKY6 102 aa13.43□□□□□ -0.26
SNX1-203ENST00000558040 MRPL41Q8IXM3 137 aaKnown RBP13.43□□□□□ -0.26
SNX1-203ENST00000558040 SIGLECL1Q8N7X8 197 aa13.43□□□□□ -0.26
SNX1-203ENST00000558040 HYLS1Q96M11 299 aa13.43□□□□□ -0.26
SNX1-203ENST00000558040 RBKSQ9H477 322 aa13.43□□□□□ -0.26
SNX1-203ENST00000558040 MBD2Q9UBB5 411 aa13.43□□□□□ -0.26
SNX1-203ENST00000558040 VPREB3Q9UKI3 123 aa13.43□□□□□ -0.26
SNX1-203ENST00000558040 FXYD6-FXYD2A0A087WZ82 144 aa13.42□□□□□ -0.26
SNX1-203ENST00000558040 E5RGE8 158 aa13.42□□□□□ -0.26
SNX1-203ENST00000558040 G3V3Q6 166 aa13.42□□□□□ -0.26
SNX1-203ENST00000558040 GPR137BO60478 399 aa13.42□□□□□ -0.26
SNX1-203ENST00000558040 CNIH1O95406 144 aa13.42□□□□□ -0.26
SNX1-203ENST00000558040 HLA-DRB1P01911 266 aa13.42□□□□□ -0.26
SNX1-203ENST00000558040 RPL27AP46776 148 aaKnown RBP13.42□□□□□ -0.26
SNX1-203ENST00000558040 COMPP49747 757 aaPredicted RBP13.42□□□□□ -0.26
SNX1-203ENST00000558040 MRGPRG-AS1Q2M3A8 158 aa13.42□□□□□ -0.26
SNX1-203ENST00000558040 TMEM86BQ8N661 226 aa13.42□□□□□ -0.26
SNX1-203ENST00000558040 C5orf56Q8N8D9 126 aa13.42□□□□□ -0.26
SNX1-203ENST00000558040 DTD1Q8TEA8 209 aa13.42□□□□□ -0.26
SNX1-203ENST00000558040 DCUN1D4Q92564 292 aa13.42□□□□□ -0.26
SNX1-203ENST00000558040 HINT2Q9BX68 163 aa13.42□□□□□ -0.26
SNX1-203ENST00000558040 HIPK2Q9H2X6 1198 aa13.42□□□□□ -0.26
SNX1-203ENST00000558040 PLEKHA3Q9HB20 300 aa13.42□□□□□ -0.26
SNX1-203ENST00000558040 A0A1W2PN81 502 aa13.41□□□□□ -0.26
SNX1-203ENST00000558040 H0YIZ8 118 aa13.41□□□□□ -0.26
SNX1-203ENST00000558040 HOXA3O43365 443 aaPredicted RBP13.41□□□□□ -0.26
SNX1-203ENST00000558040 CHST1O43916 411 aa13.41□□□□□ -0.26
SNX1-203ENST00000558040 OPN1MWP04001 364 aa13.41□□□□□ -0.26
SNX1-203ENST00000558040 OPN1MW2P0DN77 364 aa13.41□□□□□ -0.26
SNX1-203ENST00000558040 OPN1MW3P0DN78 364 aa13.41□□□□□ -0.26
SNX1-203ENST00000558040 LYL1P12980 280 aa13.41□□□□□ -0.26
SNX1-203ENST00000558040 CHRNA7P36544 502 aa13.41□□□□□ -0.26
SNX1-203ENST00000558040 NUP62P37198 522 aaPredicted RBP13.41□□□□□ -0.26
SNX1-203ENST00000558040 RPL23AP62750 156 aaKnown RBP13.41□□□□□ -0.26
SNX1-203ENST00000558040 ZNF562Q6V9R5 426 aa13.41□□□□□ -0.26
SNX1-203ENST00000558040 NOXA1Q86UR1 476 aa13.41□□□□□ -0.26
SNX1-203ENST00000558040 RNF126Q9BV68 326 aa13.41□□□□□ -0.26
SNX1-203ENST00000558040 NDUFA4L2Q9NRX3 87 aa13.41□□□□□ -0.26
SNX1-203ENST00000558040 OR5AC2Q9NZP5 309 aa13.41□□□□□ -0.26
SNX1-203ENST00000558040 WSB1Q9Y6I7 421 aa13.41□□□□□ -0.26
SNX1-203ENST00000558040 CYSRT1A8MQ03 144 aa13.4□□□□□ -0.26
SNX1-203ENST00000558040 FCN1O00602 326 aa13.4□□□□□ -0.26
SNX1-203ENST00000558040 IAPPP10997 89 aa13.4□□□□□ -0.26
SNX1-203ENST00000558040 MYOD1P15172 320 aa13.4□□□□□ -0.26
SNX1-203ENST00000558040 TAS2R30P59541 319 aa13.4□□□□□ -0.26
SNX1-203ENST00000558040 FXYD3Q14802 87 aa13.4□□□□□ -0.26
SNX1-203ENST00000558040 SPINK9Q5DT21 86 aa13.4□□□□□ -0.26
SNX1-203ENST00000558040 TMEM65Q6PI78 240 aa13.4□□□□□ -0.26
SNX1-203ENST00000558040 ZNF546Q86UE3 836 aa13.4□□□□□ -0.26
SNX1-203ENST00000558040 SRSF12Q8WXF0 261 aaKnown RBP13.4□□□□□ -0.26
SNX1-203ENST00000558040 SMIM8Q96KF7 97 aa13.4□□□□□ -0.26
SNX1-203ENST00000558040 SRSF8Q9BRL6 282 aaKnown RBP13.4□□□□□ -0.26
SNX1-203ENST00000558040 GSX1Q9H4S2 264 aaPredicted RBP13.4□□□□□ -0.26
SNX1-203ENST00000558040 HEYLQ9NQ87 328 aaPredicted RBP13.4□□□□□ -0.26
SNX1-203ENST00000558040 HMSDA8MTL9 139 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms