RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 ARPC1AQ92747 370 aa10.08□□□□□ -0.8
SHMT2-227ENST00000557269 IL22RA2Q969J5 263 aa10.08□□□□□ -0.8
SHMT2-227ENST00000557269 MMP24Q9Y5R2 645 aa10.08□□□□□ -0.8
SHMT2-227ENST00000557269 A0A0B4J2A0 478 aa10.07□□□□□ -0.8
SHMT2-227ENST00000557269 TEX50A0A1B0GTY4 177 aa10.07□□□□□ -0.8
SHMT2-227ENST00000557269 MSGN1A6NI15 193 aa10.07□□□□□ -0.8
SHMT2-227ENST00000557269 AP4M1O00189 453 aa10.07□□□□□ -0.8
SHMT2-227ENST00000557269 KCNAB3O43448 404 aa10.07□□□□□ -0.8
SHMT2-227ENST00000557269 DUS4LO95620 317 aaKnown RBP10.07□□□□□ -0.8
SHMT2-227ENST00000557269 APELAP0DMC3 54 aa10.07□□□□□ -0.8
SHMT2-227ENST00000557269 SRSF4Q08170 494 aaKnown RBP10.07□□□□□ -0.8
SHMT2-227ENST00000557269 FOXL1Q12952 345 aa10.07□□□□□ -0.8
SHMT2-227ENST00000557269 NMSQ5H8A3 153 aa10.07□□□□□ -0.8
SHMT2-227ENST00000557269 ZNF329Q86UD4 541 aa10.07□□□□□ -0.8
SHMT2-227ENST00000557269 FOXRED2Q8IWF2 684 aa10.07□□□□□ -0.8
SHMT2-227ENST00000557269 STPG2Q8N412 459 aa10.07□□□□□ -0.8
SHMT2-227ENST00000557269 KLHDC1Q8N7A1 406 aa10.07□□□□□ -0.8
SHMT2-227ENST00000557269 ZNF431Q8TF32 576 aaPredicted RBP10.07□□□□□ -0.8
SHMT2-227ENST00000557269 WIPF2Q8TF74 440 aaPredicted RBP10.07□□□□□ -0.8
SHMT2-227ENST00000557269 ABHD5Q8WTS1 349 aa10.07□□□□□ -0.8
SHMT2-227ENST00000557269 SRSF12Q8WXF0 261 aaKnown RBP10.07□□□□□ -0.8
SHMT2-227ENST00000557269 SHPKQ9UHJ6 478 aa10.07□□□□□ -0.8
SHMT2-227ENST00000557269 HMX3A6NHT5 357 aa10.06□□□□□ -0.8
SHMT2-227ENST00000557269 C15orf61A6NNL5 157 aa10.06□□□□□ -0.8
SHMT2-227ENST00000557269 MPTX1A8MV57 137 aa10.06□□□□□ -0.8
SHMT2-227ENST00000557269 TEX22C9J3V5 150 aa10.06□□□□□ -0.8
SHMT2-227ENST00000557269 ADAP1O75689 374 aa10.06□□□□□ -0.8
SHMT2-227ENST00000557269 SNAPC5O75971 98 aa10.06□□□□□ -0.8
SHMT2-227ENST00000557269 ATG12O94817 140 aa10.06□□□□□ -0.8
SHMT2-227ENST00000557269 IL5P05113 134 aa10.06□□□□□ -0.8
SHMT2-227ENST00000557269 HOXB5P09067 269 aa10.06□□□□□ -0.8
SHMT2-227ENST00000557269 MAS1LP35410 378 aa10.06□□□□□ -0.8
SHMT2-227ENST00000557269 CRIP2P52943 208 aaPredicted RBP10.06□□□□□ -0.8
SHMT2-227ENST00000557269 SRPXP78539 464 aa10.06□□□□□ -0.8
SHMT2-227ENST00000557269 CFHR3Q02985 330 aa10.06□□□□□ -0.8
SHMT2-227ENST00000557269 ECSCRQ19T08 205 aa10.06□□□□□ -0.8
SHMT2-227ENST00000557269 RGS21Q2M5E4 152 aa10.06□□□□□ -0.8
SHMT2-227ENST00000557269 LFNGQ8NES3 379 aa10.06□□□□□ -0.8
SHMT2-227ENST00000557269 SGMS2Q8NHU3 365 aa10.06□□□□□ -0.8
SHMT2-227ENST00000557269 RNASE11Q8TAA1 199 aaKnown RBP10.06□□□□□ -0.8
SHMT2-227ENST00000557269 MITD1Q8WV92 249 aa10.06□□□□□ -0.8
SHMT2-227ENST00000557269 LSM10Q969L4 123 aaKnown RBP10.06□□□□□ -0.8
SHMT2-227ENST00000557269 RRNAD1Q96FB5 475 aaKnown RBP10.06□□□□□ -0.8
SHMT2-227ENST00000557269 FYTTD1Q96QD9 318 aaKnown RBP10.06□□□□□ -0.8
SHMT2-227ENST00000557269 QTRT1Q9BXR0 403 aaKnown RBP10.06□□□□□ -0.8
SHMT2-227ENST00000557269 TMEM14BQ9NUH8 114 aa10.06□□□□□ -0.8
SHMT2-227ENST00000557269 OR51B2Q9Y5P1 312 aa10.06□□□□□ -0.8
SHMT2-227ENST00000557269 TNCP24821 2201 aa10.06□□□□□ -0.8
SHMT2-227ENST00000557269 TRAV41A0A0B4J266 112 aa10.05□□□□□ -0.8
SHMT2-227ENST00000557269 SOX15O60248 233 aa10.05□□□□□ -0.8
SHMT2-227ENST00000557269 CREBL2O60519 120 aaPredicted RBP10.05□□□□□ -0.8
SHMT2-227ENST00000557269 ACTL6BO94805 426 aa10.05□□□□□ -0.8
SHMT2-227ENST00000557269 VDAC1P21796 283 aa10.05□□□□□ -0.8
SHMT2-227ENST00000557269 PPIFP30405 207 aaKnown RBP10.05□□□□□ -0.8
SHMT2-227ENST00000557269 RPL27AP46776 148 aaKnown RBP10.05□□□□□ -0.8
SHMT2-227ENST00000557269 OXA1LQ15070 435 aa10.05□□□□□ -0.8
SHMT2-227ENST00000557269 TCTEX1D4Q5JR98 221 aa10.05□□□□□ -0.8
SHMT2-227ENST00000557269 CENPVQ7Z7K6 275 aaPredicted RBP10.05□□□□□ -0.8
SHMT2-227ENST00000557269 OR10W1Q8NGF6 305 aa10.05□□□□□ -0.8
SHMT2-227ENST00000557269 OR4A16Q8NH70 328 aa10.05□□□□□ -0.8
SHMT2-227ENST00000557269 COQ8AQ8NI60 647 aa10.05□□□□□ -0.8
SHMT2-227ENST00000557269 WFDC12Q8WWY7 111 aa10.05□□□□□ -0.8
SHMT2-227ENST00000557269 CACNG5Q9UF02 275 aa10.05□□□□□ -0.8
SHMT2-227ENST00000557269 PRNDQ9UKY0 176 aa10.05□□□□□ -0.8
SHMT2-227ENST00000557269 FOXA2Q9Y261 457 aaPredicted RBP10.05□□□□□ -0.8
SHMT2-227ENST00000557269 A0A1B0GUS0 222 aa10.04□□□□□ -0.8
SHMT2-227ENST00000557269 PSMB11A5LHX3 300 aa10.04□□□□□ -0.8
SHMT2-227ENST00000557269 ST8SIA3O43173 380 aa10.04□□□□□ -0.8
SHMT2-227ENST00000557269 NXPH3O95157 252 aa10.04□□□□□ -0.8
SHMT2-227ENST00000557269 FGF2P09038 288 aa10.04□□□□□ -0.8
SHMT2-227ENST00000557269 AREGP15514 252 aa10.04□□□□□ -0.8
SHMT2-227ENST00000557269 C2orf68Q2NKX9 166 aa10.04□□□□□ -0.8
SHMT2-227ENST00000557269 AKIRIN2Q53H80 203 aa10.04□□□□□ -0.8
SHMT2-227ENST00000557269 SPINK9Q5DT21 86 aa10.04□□□□□ -0.8
SHMT2-227ENST00000557269 GGNBP1Q5YKI7 109 aa10.04□□□□□ -0.8
SHMT2-227ENST00000557269 UNQ5815/PRO19632Q6UWF5 114 aa10.04□□□□□ -0.8
SHMT2-227ENST00000557269 C19orf35Q6ZS72 473 aa10.04□□□□□ -0.8
SHMT2-227ENST00000557269 LCNL1Q6ZST4 164 aa10.04□□□□□ -0.8
SHMT2-227ENST00000557269 FAM219AQ8IW50 185 aa10.04□□□□□ -0.8
SHMT2-227ENST00000557269 C12orf45Q8N5I9 185 aaPredicted RBP10.04□□□□□ -0.8
SHMT2-227ENST00000557269 C11orf44Q8N8P7 122 aa10.04□□□□□ -0.8
SHMT2-227ENST00000557269 MINDY2Q8NBR6 621 aa10.04□□□□□ -0.8
SHMT2-227ENST00000557269 OR5T1Q8NG75 326 aa10.04□□□□□ -0.8
SHMT2-227ENST00000557269 CHPT1Q8WUD6 406 aa10.04□□□□□ -0.8
SHMT2-227ENST00000557269 PHB2Q99623 299 aa10.04□□□□□ -0.8
SHMT2-227ENST00000557269 COMMD5Q9GZQ3 224 aa10.04□□□□□ -0.8
SHMT2-227ENST00000557269 NDUFA4L2Q9NRX3 87 aa10.04□□□□□ -0.8
SHMT2-227ENST00000557269 ZNF580Q9UK33 172 aa10.04□□□□□ -0.8
SHMT2-227ENST00000557269 TET2Q6N021 2002 aaPredicted RBP10.04□□□□□ -0.8
SHMT2-227ENST00000557269 DUXBA0A1W2PPF3 345 aa10.03□□□□□ -0.8
SHMT2-227ENST00000557269 IGLC7A0M8Q6 106 aa10.03□□□□□ -0.8
SHMT2-227ENST00000557269 CCSO14618 274 aa10.03□□□□□ -0.8
SHMT2-227ENST00000557269 RBMXL2O75526 392 aaKnown RBP10.03□□□□□ -0.8
SHMT2-227ENST00000557269 DHFRP00374 187 aa10.03□□□□□ -0.8
SHMT2-227ENST00000557269 REG1AP05451 166 aa10.03□□□□□ -0.8
SHMT2-227ENST00000557269 CD28P10747 220 aa10.03□□□□□ -0.8
SHMT2-227ENST00000557269 AARDQ4LEZ3 155 aa10.03□□□□□ -0.8
SHMT2-227ENST00000557269 C11orf87Q6NUJ2 197 aa10.03□□□□□ -0.8
SHMT2-227ENST00000557269 ZNF429Q86V71 674 aa10.03□□□□□ -0.8
SHMT2-227ENST00000557269 UXS1Q8NBZ7 420 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms