RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 RFNGQ9Y644 331 aa11.91□□□□□ -0.5
VPS33B-205ENST00000556096 POLQO75417 2590 aa11.91□□□□□ -0.5
VPS33B-205ENST00000556096 LY6LH3BQJ8 138 aa11.91□□□□□ -0.5
VPS33B-205ENST00000556096 IFNA10P01566 189 aa11.91□□□□□ -0.5
VPS33B-205ENST00000556096 IGHV2-5P01817 119 aa11.91□□□□□ -0.5
VPS33B-205ENST00000556096 HOXA1P49639 335 aaPredicted RBP11.91□□□□□ -0.5
VPS33B-205ENST00000556096 RPS16P62249 146 aaKnown RBP11.91□□□□□ -0.5
VPS33B-205ENST00000556096 SERF2P84101 59 aa11.91□□□□□ -0.5
VPS33B-205ENST00000556096 PRCDQ00LT1 54 aa11.91□□□□□ -0.5
VPS33B-205ENST00000556096 AKR1C8PQ5T2L2 129 aa11.91□□□□□ -0.5
VPS33B-205ENST00000556096 CENPVQ7Z7K6 275 aaPredicted RBP11.91□□□□□ -0.5
VPS33B-205ENST00000556096 BPIFCQ8NFQ6 507 aa11.91□□□□□ -0.5
VPS33B-205ENST00000556096 OR11H6Q8NGC7 330 aa11.91□□□□□ -0.5
VPS33B-205ENST00000556096 OR4P4Q8NGL7 312 aa11.91□□□□□ -0.5
VPS33B-205ENST00000556096 OR5B3Q8NH48 314 aa11.91□□□□□ -0.5
VPS33B-205ENST00000556096 TMEM167AQ8TBQ9 72 aa11.91□□□□□ -0.5
VPS33B-205ENST00000556096 TAF15Q92804 592 aaKnown RBP eCLIP11.91□□□□□ -0.5
VPS33B-205ENST00000556096 MS4A7Q9GZW8 240 aaPredicted RBP11.91□□□□□ -0.5
VPS33B-205ENST00000556096 NARFLQ9H6Q4 476 aa11.91□□□□□ -0.5
VPS33B-205ENST00000556096 ENY2Q9NPA8 101 aa11.91□□□□□ -0.5
VPS33B-205ENST00000556096 UQCC1Q9NVA1 299 aa11.91□□□□□ -0.5
VPS33B-205ENST00000556096 TIMM9Q9Y5J7 89 aa11.91□□□□□ -0.5
VPS33B-205ENST00000556096 APCP25054 2843 aa11.9□□□□□ -0.5
VPS33B-205ENST00000556096 TSPAN15O95858 294 aa11.9□□□□□ -0.5
VPS33B-205ENST00000556096 USF1P22415 310 aaPredicted RBP11.9□□□□□ -0.5
VPS33B-205ENST00000556096 PRTN3P24158 256 aa11.9□□□□□ -0.5
VPS33B-205ENST00000556096 LGALS7P47929 136 aa11.9□□□□□ -0.5
VPS33B-205ENST00000556096 FHITP49789 147 aa11.9□□□□□ -0.5
VPS33B-205ENST00000556096 DLX1P56177 255 aa11.9□□□□□ -0.5
VPS33B-205ENST00000556096 ARF6P62330 175 aa11.9□□□□□ -0.5
VPS33B-205ENST00000556096 ZNF616Q08AN1 781 aa11.9□□□□□ -0.5
VPS33B-205ENST00000556096 CCDC28AQ8IWP9 274 aa11.9□□□□□ -0.5
VPS33B-205ENST00000556096 PNKDQ8N490 385 aa11.9□□□□□ -0.5
VPS33B-205ENST00000556096 FAM213BQ8TBF2 198 aa11.9□□□□□ -0.5
VPS33B-205ENST00000556096 GGACTQ9BVM4 153 aa11.9□□□□□ -0.5
VPS33B-205ENST00000556096 TEX50A0A1B0GTY4 177 aa11.89□□□□□ -0.51
VPS33B-205ENST00000556096 CYSRT1A8MQ03 144 aa11.89□□□□□ -0.51
VPS33B-205ENST00000556096 IGLV2-23P01705 113 aa11.89□□□□□ -0.51
VPS33B-205ENST00000556096 MDKP21741 143 aaPredicted RBP11.89□□□□□ -0.51
VPS33B-205ENST00000556096 COX7A1P24310 79 aa11.89□□□□□ -0.51
VPS33B-205ENST00000556096 ATP5IP56385 69 aaPredicted RBP11.89□□□□□ -0.51
VPS33B-205ENST00000556096 RAB11AP62491 216 aa11.89□□□□□ -0.51
VPS33B-205ENST00000556096 TUSC1Q2TAM9 212 aa11.89□□□□□ -0.51
VPS33B-205ENST00000556096 RBMXL1Q96E39 390 aaKnown RBP11.89□□□□□ -0.51
VPS33B-205ENST00000556096 RSG1Q9BU20 258 aa11.89□□□□□ -0.51
VPS33B-205ENST00000556096 FBXO7Q9Y3I1 522 aa11.89□□□□□ -0.51
VPS33B-205ENST00000556096 INSIG2Q9Y5U4 225 aa11.89□□□□□ -0.51
VPS33B-205ENST00000556096 IGHV1-3A0A0C4DH29 117 aa11.89□□□□□ -0.51
VPS33B-205ENST00000556096 UBE2L5PA0A1B0GUS4 154 aa11.89□□□□□ -0.51
VPS33B-205ENST00000556096 RRHO14718 337 aa11.89□□□□□ -0.51
VPS33B-205ENST00000556096 ENSAO43768 121 aaKnown RBP11.89□□□□□ -0.51
VPS33B-205ENST00000556096 SNCAP37840 140 aa11.89□□□□□ -0.51
VPS33B-205ENST00000556096 ETV3LQ6ZN32 361 aa11.89□□□□□ -0.51
VPS33B-205ENST00000556096 LFNGQ8NES3 379 aa11.89□□□□□ -0.51
VPS33B-205ENST00000556096 CCL19Q99731 98 aa11.89□□□□□ -0.51
VPS33B-205ENST00000556096 UNKLQ9H9P5 680 aaKnown RBP11.89□□□□□ -0.51
VPS33B-205ENST00000556096 TET2Q6N021 2002 aaPredicted RBP11.88□□□□□ -0.51
VPS33B-205ENST00000556096 ITPR2Q14571 2701 aa11.88□□□□□ -0.51
VPS33B-205ENST00000556096 TMEM218A2RU14 115 aa11.88□□□□□ -0.51
VPS33B-205ENST00000556096 PRSS46E5RG02 174 aa11.88□□□□□ -0.51
VPS33B-205ENST00000556096 IGHV4-39P01824 125 aa11.88□□□□□ -0.51
VPS33B-205ENST00000556096 ZFP36P26651 326 aaKnown RBP11.88□□□□□ -0.51
VPS33B-205ENST00000556096 PDLIM4P50479 330 aa11.88□□□□□ -0.51
VPS33B-205ENST00000556096 RPL8P62917 257 aaKnown RBP11.88□□□□□ -0.51
VPS33B-205ENST00000556096 VMA21Q3ZAQ7 101 aa11.88□□□□□ -0.51
VPS33B-205ENST00000556096 TMEM170AQ8WVE7 144 aa11.88□□□□□ -0.51
VPS33B-205ENST00000556096 RPEQ96AT9 228 aa11.88□□□□□ -0.51
VPS33B-205ENST00000556096 PLEKHA3Q9HB20 300 aa11.88□□□□□ -0.51
VPS33B-205ENST00000556096 KPTNQ9Y664 436 aa11.88□□□□□ -0.51
VPS33B-205ENST00000556096 SPG11Q96JI7 2443 aa11.87□□□□□ -0.51
VPS33B-205ENST00000556096 BTBD17A6NE02 478 aa11.87□□□□□ -0.51
VPS33B-205ENST00000556096 INS-IGF2F8WCM5 200 aa11.87□□□□□ -0.51
VPS33B-205ENST00000556096 CD5P06127 495 aa11.87□□□□□ -0.51
VPS33B-205ENST00000556096 MYOD1P15172 320 aa11.87□□□□□ -0.51
VPS33B-205ENST00000556096 NPY1RP25929 384 aa11.87□□□□□ -0.51
VPS33B-205ENST00000556096 DVL1P1P54792 670 aaPredicted RBP11.87□□□□□ -0.51
VPS33B-205ENST00000556096 LMO4P61968 165 aa11.87□□□□□ -0.51
VPS33B-205ENST00000556096 DLK1P80370 383 aa11.87□□□□□ -0.51
VPS33B-205ENST00000556096 SRSF3P84103 164 aaKnown RBP11.87□□□□□ -0.51
VPS33B-205ENST00000556096 PAX2Q02962 417 aa11.87□□□□□ -0.51
VPS33B-205ENST00000556096 HCP5Q6MZN7 132 aa11.87□□□□□ -0.51
VPS33B-205ENST00000556096 TEX45Q8NA69 505 aa11.87□□□□□ -0.51
VPS33B-205ENST00000556096 SLC24A4Q8NFF2 622 aa11.87□□□□□ -0.51
VPS33B-205ENST00000556096 OR1L8Q8NGR8 309 aa11.87□□□□□ -0.51
VPS33B-205ENST00000556096 RNF5Q99942 180 aa11.87□□□□□ -0.51
VPS33B-205ENST00000556096 BPESC1Q9GZL8 116 aa11.87□□□□□ -0.51
VPS33B-205ENST00000556096 NDUFA4L2Q9NRX3 87 aa11.87□□□□□ -0.51
VPS33B-205ENST00000556096 ODF3BA8MYP8 253 aa11.86□□□□□ -0.51
VPS33B-205ENST00000556096 RNASEK-C17orf49H0YIS7 233 aa11.86□□□□□ -0.51
VPS33B-205ENST00000556096 H2AFB1P0C5Y9 115 aa11.86□□□□□ -0.51
VPS33B-205ENST00000556096 FGF7P21781 194 aa11.86□□□□□ -0.51
VPS33B-205ENST00000556096 HTR1DP28221 377 aa11.86□□□□□ -0.51
VPS33B-205ENST00000556096 CD1BP29016 333 aa11.86□□□□□ -0.51
VPS33B-205ENST00000556096 PRB3Q04118 309 aaPredicted RBP11.86□□□□□ -0.51
VPS33B-205ENST00000556096 TPTE2P1Q5T6R2 138 aa11.86□□□□□ -0.51
VPS33B-205ENST00000556096 MOB3BQ86TA1 216 aa11.86□□□□□ -0.51
VPS33B-205ENST00000556096 CLDND2Q8NHS1 167 aa11.86□□□□□ -0.51
VPS33B-205ENST00000556096 COMMD5Q9GZQ3 224 aa11.86□□□□□ -0.51
VPS33B-205ENST00000556096 TREM1Q9NP99 234 aa11.86□□□□□ -0.51
VPS33B-205ENST00000556096 SIRT7Q9NRC8 400 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms