RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 TCTEX1D2Q8WW35 142 aa11.16□□□□□ -0.62
SHMT2-217ENST00000555116 TMEM230Q96A57 120 aa11.16□□□□□ -0.62
SHMT2-217ENST00000555116 RTBDNQ9BSG5 229 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-217ENST00000555116 PARP11Q9NR21 331 aa11.16□□□□□ -0.62
SHMT2-217ENST00000555116 FBXO7Q9Y3I1 522 aa11.16□□□□□ -0.62
SHMT2-217ENST00000555116 TCRBV4S1A1TA0A5B7 111 aa11.15□□□□□ -0.62
SHMT2-217ENST00000555116 L7N2F9 121 aa11.15□□□□□ -0.62
SHMT2-217ENST00000555116 EGR2P11161 476 aaPredicted RBP11.15□□□□□ -0.62
SHMT2-217ENST00000555116 C4BPBP20851 252 aa11.15□□□□□ -0.62
SHMT2-217ENST00000555116 SLC35B1P78383 322 aa11.15□□□□□ -0.62
SHMT2-217ENST00000555116 OPCMLQ14982 345 aa11.15□□□□□ -0.62
SHMT2-217ENST00000555116 MRGPRG-AS1Q2M3A8 158 aa11.15□□□□□ -0.62
SHMT2-217ENST00000555116 COMMD1Q8N668 190 aa11.15□□□□□ -0.62
SHMT2-217ENST00000555116 CLCC1Q96S66 551 aa11.15□□□□□ -0.62
SHMT2-217ENST00000555116 FXYD6-FXYD2A0A087WZ82 144 aa11.15□□□□□ -0.63
SHMT2-217ENST00000555116 DBX1A6NMT0 343 aa11.15□□□□□ -0.63
SHMT2-217ENST00000555116 CCSO14618 274 aa11.15□□□□□ -0.63
SHMT2-217ENST00000555116 CA2P00918 260 aa11.15□□□□□ -0.63
SHMT2-217ENST00000555116 OPN1MWP04001 364 aa11.15□□□□□ -0.63
SHMT2-217ENST00000555116 OPN1MW2P0DN77 364 aa11.15□□□□□ -0.63
SHMT2-217ENST00000555116 OPN1MW3P0DN78 364 aa11.15□□□□□ -0.63
SHMT2-217ENST00000555116 PI3P19957 117 aa11.15□□□□□ -0.63
SHMT2-217ENST00000555116 CRIP2P52943 208 aaPredicted RBP11.15□□□□□ -0.63
SHMT2-217ENST00000555116 UBE2KP61086 200 aa11.15□□□□□ -0.63
SHMT2-217ENST00000555116 SSBP2P81877 361 aaPredicted RBP11.15□□□□□ -0.63
SHMT2-217ENST00000555116 SURF2Q15527 256 aaPredicted RBP11.15□□□□□ -0.63
SHMT2-217ENST00000555116 C19orf54Q5BKX5 351 aa11.15□□□□□ -0.63
SHMT2-217ENST00000555116 TREML4Q6UXN2 200 aa11.15□□□□□ -0.63
SHMT2-217ENST00000555116 ZNF562Q6V9R5 426 aa11.15□□□□□ -0.63
SHMT2-217ENST00000555116 PPP1R27Q86WC6 154 aa11.15□□□□□ -0.63
SHMT2-217ENST00000555116 TSSC4Q9Y5U2 329 aaPredicted RBP11.15□□□□□ -0.63
SHMT2-217ENST00000555116 WSB1Q9Y6I7 421 aa11.15□□□□□ -0.63
SHMT2-217ENST00000555116 TRAV14DV4A0A0A6YYC5 116 aa11.14□□□□□ -0.63
SHMT2-217ENST00000555116 G3V318 75 aa11.14□□□□□ -0.63
SHMT2-217ENST00000555116 ARPC5O15511 151 aa11.14□□□□□ -0.63
SHMT2-217ENST00000555116 M6PRP20645 277 aa11.14□□□□□ -0.63
SHMT2-217ENST00000555116 VDAC1P21796 283 aa11.14□□□□□ -0.63
SHMT2-217ENST00000555116 PPIFP30405 207 aaKnown RBP11.14□□□□□ -0.63
SHMT2-217ENST00000555116 PJVKQ0ZLH3 352 aa11.14□□□□□ -0.63
SHMT2-217ENST00000555116 CCDC28AQ8IWP9 274 aa11.14□□□□□ -0.63
SHMT2-217ENST00000555116 TEX45Q8NA69 505 aa11.14□□□□□ -0.63
SHMT2-217ENST00000555116 OR4S2Q8NH73 311 aa11.14□□□□□ -0.63
SHMT2-217ENST00000555116 CITED4Q96RK1 184 aa11.14□□□□□ -0.63
SHMT2-217ENST00000555116 TRAV41A0A0B4J266 112 aa11.13□□□□□ -0.63
SHMT2-217ENST00000555116 A0A1W2PRX2 142 aa11.13□□□□□ -0.63
SHMT2-217ENST00000555116 SFT2D2O95562 160 aa11.13□□□□□ -0.63
SHMT2-217ENST00000555116 IGHG4P01861 327 aa11.13□□□□□ -0.63
SHMT2-217ENST00000555116 KIR2DS2P43631 304 aa11.13□□□□□ -0.63
SHMT2-217ENST00000555116 SUPT4H1P63272 117 aaKnown RBP11.13□□□□□ -0.63
SHMT2-217ENST00000555116 VMA21Q3ZAQ7 101 aa11.13□□□□□ -0.63
SHMT2-217ENST00000555116 TEX38Q6PEX7 206 aa11.13□□□□□ -0.63
SHMT2-217ENST00000555116 RNF152Q8N8N0 203 aa11.13□□□□□ -0.63
SHMT2-217ENST00000555116 SEC22AQ96IW7 307 aa11.13□□□□□ -0.63
SHMT2-217ENST00000555116 NBEAL1Q6ZS30 2694 aa11.13□□□□□ -0.63
SHMT2-217ENST00000555116 FBN3Q75N90 2809 aa11.13□□□□□ -0.63
SHMT2-217ENST00000555116 CMYA5Q8N3K9 4069 aa11.13□□□□□ -0.63
SHMT2-217ENST00000555116 RBFOX2O43251 390 aaKnown RBP eCLIP11.12□□□□□ -0.635e-15■■■■■ 33.3
SHMT2-217ENST00000555116 RAMP3O60896 148 aa11.12□□□□□ -0.63
SHMT2-217ENST00000555116 PGLYRP1O75594 196 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-217ENST00000555116 CFDP00746 253 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-217ENST00000555116 IFNA7P01567 189 aa11.12□□□□□ -0.63
SHMT2-217ENST00000555116 SAA1P0DJI8 122 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-217ENST00000555116 S100A11P31949 105 aa11.12□□□□□ -0.63
SHMT2-217ENST00000555116 ECI1P42126 302 aa11.12□□□□□ -0.63
SHMT2-217ENST00000555116 UCP3P55916 312 aa11.12□□□□□ -0.63
SHMT2-217ENST00000555116 FGL1Q08830 312 aa11.12□□□□□ -0.63
SHMT2-217ENST00000555116 CATR1Q13166 79 aa11.12□□□□□ -0.63
SHMT2-217ENST00000555116 FOXE3Q13461 319 aa11.12□□□□□ -0.63
SHMT2-217ENST00000555116 TMUB2Q71RG4 321 aa11.12□□□□□ -0.63
SHMT2-217ENST00000555116 SPAG16Q8N0X2 631 aa11.12□□□□□ -0.63
SHMT2-217ENST00000555116 PDCD10Q9BUL8 212 aa11.12□□□□□ -0.63
SHMT2-217ENST00000555116 RSRP1Q9BUV0 290 aa11.12□□□□□ -0.63
SHMT2-217ENST00000555116 A0A0B4J2A0 478 aa11.12□□□□□ -0.63
SHMT2-217ENST00000555116 GPR31O00270 319 aa11.12□□□□□ -0.63
SHMT2-217ENST00000555116 ELANEP08246 267 aa11.12□□□□□ -0.63
SHMT2-217ENST00000555116 PGAM2P15259 253 aa11.12□□□□□ -0.63
SHMT2-217ENST00000555116 AP2S1P53680 142 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-217ENST00000555116 RPL23AP62750 156 aaKnown RBP11.12□□□□□ -0.63
SHMT2-217ENST00000555116 EXOSC2Q13868 293 aaKnown RBP11.12□□□□□ -0.63
SHMT2-217ENST00000555116 FXYD3Q14802 87 aa11.12□□□□□ -0.63
SHMT2-217ENST00000555116 PRSS8Q16651 343 aa11.12□□□□□ -0.63
SHMT2-217ENST00000555116 LCNL1Q6ZST4 164 aa11.12□□□□□ -0.63
SHMT2-217ENST00000555116 OR51H1Q8NH63 302 aa11.12□□□□□ -0.63
SHMT2-217ENST00000555116 FAM110DQ8TAY7 271 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-217ENST00000555116 ARPC1AQ92747 370 aa11.12□□□□□ -0.63
SHMT2-217ENST00000555116 FAM103A1Q9BTL3 118 aaKnown RBP11.12□□□□□ -0.63
SHMT2-217ENST00000555116 SHPKQ9UHJ6 478 aa11.12□□□□□ -0.63
SHMT2-217ENST00000555116 TMA7Q9Y2S6 64 aaKnown RBP11.12□□□□□ -0.63
SHMT2-217ENST00000555116 FAM25EA8MYX2 175 aa11.11□□□□□ -0.63
SHMT2-217ENST00000555116 IGLV1-40P01703 118 aa11.11□□□□□ -0.63
SHMT2-217ENST00000555116 RPLP1P05386 114 aaKnown RBP11.11□□□□□ -0.63
SHMT2-217ENST00000555116 RPA2P15927 270 aa11.11□□□□□ -0.63
SHMT2-217ENST00000555116 PSMB8P28062 276 aa11.11□□□□□ -0.63
SHMT2-217ENST00000555116 ECSCRQ19T08 205 aa11.11□□□□□ -0.63
SHMT2-217ENST00000555116 KHDC1LQ5JSQ8 128 aa11.11□□□□□ -0.63
SHMT2-217ENST00000555116 TMEM65Q6PI78 240 aa11.11□□□□□ -0.63
SHMT2-217ENST00000555116 VKORC1L1Q8N0U8 176 aa11.11□□□□□ -0.63
SHMT2-217ENST00000555116 ABHD5Q8WTS1 349 aa11.11□□□□□ -0.63
SHMT2-217ENST00000555116 PPP1R1CQ8WVI7 109 aa11.11□□□□□ -0.63
SHMT2-217ENST00000555116 ZFP57Q9NU63 452 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms