RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 SHISA9B4DS77 424 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 F6UZH7 168 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 HS3ST1O14792 307 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 CIDEAO60543 219 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 MMP23AO75900 390 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 SERF1AO75920 110 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 CD3EP07766 207 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 CELA3BP08861 270 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 CD40P25942 277 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 CTRLP40313 264 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 GRB2P62993 217 aaKnown RBP6.38□□□□□ -1.39
LIMA1-216ENST00000552909 FOXL1Q12952 345 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 OR5T1Q8NG75 326 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 OR1F12Q8NHA8 337 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 DYRK2Q92630 601 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 RAB40CQ96S21 281 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 OR2H1Q9GZK4 316 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 NGBQ9NPG2 151 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 TP53TG3Q9ULZ0 132 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 SETD2Q9BYW2 2564 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-216ENST00000552909 TLN2Q9Y4G6 2542 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 HSBP1L1C9JCN9 74 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 DIRC3C9JPN6 131 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 HYPMO75409 117 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 DHRS3O75911 302 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 IGLC2P0DOY2 106 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 IGLC3P0DOY3 106 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 CRISP2P16562 243 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 FAHP16930 419 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 HOXC12P31275 282 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 YPEL3P61236 119 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-216ENST00000552909 RPL19P84098 196 aaKnown RBP6.38□□□□□ -1.39
LIMA1-216ENST00000552909 OR8B8Q15620 311 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 LRRC75BQ2VPJ9 315 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 MAJINQ3KP22 176 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 NRN1LQ496H8 165 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 BAGE3Q86Y29 109 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 BAGE2Q86Y30 109 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 C1orf174Q8IYL3 243 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 ZNF525Q8N782 197 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 SPTSSAQ969W0 71 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 ZNF586Q9NXT0 402 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 BET1LQ9NYM9 111 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 TAAR3PQ9P1P4 343 aa6.38□□□□□ -1.39
LIMA1-216ENST00000552909 IGHV2OR16-5A0A0B4J2B6 119 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 IGHV1-18A0A0C4DH31 117 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 M0QZ24 198 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 MLNRO43193 412 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 SYNGR3O43761 229 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 UCP1P25874 307 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 LINC00310P59036 64 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 KRTDAPP60985 99 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 ZNF672Q499Z4 452 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-216ENST00000552909 UNQ5815/PRO19632Q6UWF5 114 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 TMEM108Q6UXF1 575 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 TCF23Q7RTU1 214 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 KLHDC1Q8N7A1 406 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 SIGLECL1Q8N7X8 197 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 IGFBPL1Q8WX77 278 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 NEIL1Q96FI4 390 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-216ENST00000552909 LYZL4Q96KX0 146 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 SEPSECSQ9HD40 501 aaKnown RBP6.37□□□□□ -1.39
LIMA1-216ENST00000552909 ST3GAL6Q9Y274 331 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 PIGLQ9Y2B2 252 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 ARFGEF3Q5TH69 2177 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 C5orf63A6NC05 138 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 E7EQL1 145 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 M0R135 149 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 ANGPTL7O43827 346 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 NRASP01111 189 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 KRASP01116 189 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 IGKV3-15P01624 115 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 CCNOP22674 350 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 TNFSF4P23510 183 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 HINT1P49773 126 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-216ENST00000552909 HBG1P69891 147 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 HBG2P69892 147 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 DEFB113Q30KQ7 82 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 FFAR4Q5NUL3 377 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 VHLLQ6RSH7 139 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 Q6ZVH6 145 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 MDP1Q86V88 176 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 SGMS2Q8NHU3 365 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 NINJ1Q92982 152 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 ZNF799Q96GE5 643 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 WDR61Q9GZS3 305 aaKnown RBP6.37□□□□□ -1.39
LIMA1-216ENST00000552909 CSTL1Q9H114 145 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 FBXL7Q9UJT9 491 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 CSPG4Q6UVK1 2322 aa6.37□□□□□ -1.39
LIMA1-216ENST00000552909 TRAV30A0A087WSZ9 112 aa6.36□□□□□ -1.39
LIMA1-216ENST00000552909 TRAV34A0A0B4J273 112 aa6.36□□□□□ -1.39
LIMA1-216ENST00000552909 TMEM238C9JI98 176 aa6.36□□□□□ -1.39
LIMA1-216ENST00000552909 SPRY1O43609 319 aaPredicted RBP6.36□□□□□ -1.39
LIMA1-216ENST00000552909 IGLV1-44P01699 117 aa6.36□□□□□ -1.39
LIMA1-216ENST00000552909 IGLV3-1P01715 115 aa6.36□□□□□ -1.39
LIMA1-216ENST00000552909 WNT2P09544 360 aa6.36□□□□□ -1.39
LIMA1-216ENST00000552909 CECR9P0C854 216 aa6.36□□□□□ -1.39
LIMA1-216ENST00000552909 CCL2P13500 99 aa6.36□□□□□ -1.39
LIMA1-216ENST00000552909 ARR3P36575 388 aa6.36□□□□□ -1.39
LIMA1-216ENST00000552909 BRICD5Q6PL45 260 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms