RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 TRAV3A0A0B4J244 114 aa7.59□□□□□ -1.19
LIMA1-211ENST00000552338 CGB1A6NKQ9 187 aa7.59□□□□□ -1.19
LIMA1-211ENST00000552338 SNAPC5O75971 98 aa7.59□□□□□ -1.19
LIMA1-211ENST00000552338 BRI3O95415 125 aa7.59□□□□□ -1.19
LIMA1-211ENST00000552338 IGF1P05019 195 aa7.59□□□□□ -1.19
LIMA1-211ENST00000552338 GIPP09681 153 aaPredicted RBP7.59□□□□□ -1.19
LIMA1-211ENST00000552338 LYL1P12980 280 aa7.59□□□□□ -1.19
LIMA1-211ENST00000552338 SPCS3P61009 180 aa7.59□□□□□ -1.19
LIMA1-211ENST00000552338 IAH1Q2TAA2 248 aaPredicted RBP7.59□□□□□ -1.19
LIMA1-211ENST00000552338 RBMS3Q6XE24 437 aaKnown RBP7.59□□□□□ -1.19
LIMA1-211ENST00000552338 HSD17B13Q7Z5P4 300 aaPredicted RBP7.59□□□□□ -1.19
LIMA1-211ENST00000552338 ZNF436Q9C0F3 470 aaPredicted RBP7.59□□□□□ -1.19
LIMA1-211ENST00000552338 C11orf1Q9H5F2 150 aa7.59□□□□□ -1.19
LIMA1-211ENST00000552338 ESM1Q9NQ30 184 aa7.59□□□□□ -1.19
LIMA1-211ENST00000552338 CACNG5Q9UF02 275 aa7.59□□□□□ -1.19
LIMA1-211ENST00000552338 NSD1Q96L73 2696 aaPredicted RBP7.59□□□□□ -1.19
LIMA1-211ENST00000552338 MXRA5Q9NR99 2828 aa7.58□□□□□ -1.2
LIMA1-211ENST00000552338 TEX50A0A1B0GTY4 177 aa7.58□□□□□ -1.2
LIMA1-211ENST00000552338 DNAJC9-AS1A6NH13 148 aa7.58□□□□□ -1.2
LIMA1-211ENST00000552338 E7EUB6 86 aa7.58□□□□□ -1.2
LIMA1-211ENST00000552338 FCN1O00602 326 aa7.58□□□□□ -1.2
LIMA1-211ENST00000552338 GOSR2O14653 212 aa7.58□□□□□ -1.2
LIMA1-211ENST00000552338 CHST1O43916 411 aa7.58□□□□□ -1.2
LIMA1-211ENST00000552338 TSPAN9O75954 239 aa7.58□□□□□ -1.2
LIMA1-211ENST00000552338 EGR2P11161 476 aaPredicted RBP7.58□□□□□ -1.2
LIMA1-211ENST00000552338 COMPP49747 757 aaPredicted RBP7.58□□□□□ -1.2
LIMA1-211ENST00000552338 ATP5IP56385 69 aaPredicted RBP7.58□□□□□ -1.2
LIMA1-211ENST00000552338 TAS2R30P59541 319 aa7.58□□□□□ -1.2
LIMA1-211ENST00000552338 OR2B8PP59922 312 aa7.58□□□□□ -1.2
LIMA1-211ENST00000552338 RAP2BP61225 183 aa7.58□□□□□ -1.2
LIMA1-211ENST00000552338 CX3CL1P78423 397 aa7.58□□□□□ -1.2
LIMA1-211ENST00000552338 PRCDQ00LT1 54 aa7.58□□□□□ -1.2
LIMA1-211ENST00000552338 TNFRSF9Q07011 255 aa7.58□□□□□ -1.2
LIMA1-211ENST00000552338 HNF4GQ14541 408 aa7.58□□□□□ -1.2
LIMA1-211ENST00000552338 BSXQ3C1V8 233 aa7.58□□□□□ -1.2
LIMA1-211ENST00000552338 C19orf54Q5BKX5 351 aa7.58□□□□□ -1.2
LIMA1-211ENST00000552338 PVRIGQ6DKI7 326 aa7.58□□□□□ -1.2
LIMA1-211ENST00000552338 SSX9Q7RTT3 188 aa7.58□□□□□ -1.2
LIMA1-211ENST00000552338 OR1L8Q8NGR8 309 aa7.58□□□□□ -1.2
LIMA1-211ENST00000552338 OR4A16Q8NH70 328 aa7.58□□□□□ -1.2
LIMA1-211ENST00000552338 RBMXL1Q96E39 390 aaKnown RBP7.58□□□□□ -1.2
LIMA1-211ENST00000552338 RASL11BQ9BPW5 248 aa7.58□□□□□ -1.2
LIMA1-211ENST00000552338 CHIAQ9BZP6 476 aa7.58□□□□□ -1.2
LIMA1-211ENST00000552338 TPSG1Q9NRR2 321 aa7.58□□□□□ -1.2
LIMA1-211ENST00000552338 A0A1B0GW64 132 aa7.57□□□□□ -1.2
LIMA1-211ENST00000552338 C5orf51A6NDU8 294 aa7.57□□□□□ -1.2
LIMA1-211ENST00000552338 NCBP2LA6PVI3 153 aaKnown RBP7.57□□□□□ -1.2
LIMA1-211ENST00000552338 CCSO14618 274 aa7.57□□□□□ -1.2
LIMA1-211ENST00000552338 ST8SIA3O43173 380 aa7.57□□□□□ -1.2
LIMA1-211ENST00000552338 KCNAB3O43448 404 aa7.57□□□□□ -1.2
LIMA1-211ENST00000552338 GPR137BO60478 399 aa7.57□□□□□ -1.2
LIMA1-211ENST00000552338 MED6O75586 246 aa7.57□□□□□ -1.2
LIMA1-211ENST00000552338 CA2P00918 260 aa7.57□□□□□ -1.2
LIMA1-211ENST00000552338 CRYGCP07315 174 aa7.57□□□□□ -1.2
LIMA1-211ENST00000552338 NKX2-1P43699 371 aaPredicted RBP7.57□□□□□ -1.2
LIMA1-211ENST00000552338 VDAC2P45880 294 aaPredicted RBP7.57□□□□□ -1.2
LIMA1-211ENST00000552338 UBA52P62987 128 aaKnown RBP7.57□□□□□ -1.2
LIMA1-211ENST00000552338 FGL1Q08830 312 aa7.57□□□□□ -1.2
LIMA1-211ENST00000552338 PJVKQ0ZLH3 352 aa7.57□□□□□ -1.2
LIMA1-211ENST00000552338 IZUMO4Q1ZYL8 232 aa7.57□□□□□ -1.2
LIMA1-211ENST00000552338 AKIRIN2Q53H80 203 aa7.57□□□□□ -1.2
LIMA1-211ENST00000552338 TCTE3Q8IZS6 198 aa7.57□□□□□ -1.2
LIMA1-211ENST00000552338 UXS1Q8NBZ7 420 aa7.57□□□□□ -1.2
LIMA1-211ENST00000552338 SGMS2Q8NHU3 365 aa7.57□□□□□ -1.2
LIMA1-211ENST00000552338 ST6GAL2Q96JF0 529 aa7.57□□□□□ -1.2
LIMA1-211ENST00000552338 QTRT1Q9BXR0 403 aaKnown RBP7.57□□□□□ -1.2
LIMA1-211ENST00000552338 COMMD5Q9GZQ3 224 aa7.57□□□□□ -1.2
LIMA1-211ENST00000552338 C16orf95Q9H693 158 aa7.57□□□□□ -1.2
LIMA1-211ENST00000552338 OR51B2Q9Y5P1 312 aa7.57□□□□□ -1.2
LIMA1-211ENST00000552338 MTORP42345 2549 aa7.57□□□□□ -1.2
LIMA1-211ENST00000552338 C13orf42A0A1B0GVH6 325 aa7.56□□□□□ -1.2
LIMA1-211ENST00000552338 A0A1W2PN81 502 aa7.56□□□□□ -1.2
LIMA1-211ENST00000552338 TEX22C9J3V5 150 aa7.56□□□□□ -1.2
LIMA1-211ENST00000552338 G3V3Q6 166 aa7.56□□□□□ -1.2
LIMA1-211ENST00000552338 SYNGR2O43760 224 aa7.56□□□□□ -1.2
LIMA1-211ENST00000552338 DEDDO75618 318 aa7.56□□□□□ -1.2
LIMA1-211ENST00000552338 SIX6O95475 246 aa7.56□□□□□ -1.2
LIMA1-211ENST00000552338 MBPP02686 304 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-211ENST00000552338 SLC25A4P12235 298 aa7.56□□□□□ -1.2
LIMA1-211ENST00000552338 PSMB6P28072 239 aa7.56□□□□□ -1.2
LIMA1-211ENST00000552338 CHRNA7P36544 502 aa7.56□□□□□ -1.2
LIMA1-211ENST00000552338 RPL27AP46776 148 aaKnown RBP7.56□□□□□ -1.2
LIMA1-211ENST00000552338 BLCAPP62952 87 aa7.56□□□□□ -1.2
LIMA1-211ENST00000552338 LY6EQ16553 131 aa7.56□□□□□ -1.2
LIMA1-211ENST00000552338 CXorf66Q5JRM2 361 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-211ENST00000552338 Q71RC1 249 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-211ENST00000552338 TMEM219Q86XT9 240 aa7.56□□□□□ -1.2
LIMA1-211ENST00000552338 TTC9CQ8N5M4 171 aa7.56□□□□□ -1.2
LIMA1-211ENST00000552338 ZNF114Q8NC26 417 aa7.56□□□□□ -1.2
LIMA1-211ENST00000552338 OR1S1Q8NH92 325 aa7.56□□□□□ -1.2
LIMA1-211ENST00000552338 RNASE11Q8TAA1 199 aaKnown RBP7.56□□□□□ -1.2
LIMA1-211ENST00000552338 PPP1R1CQ8WVI7 109 aa7.56□□□□□ -1.2
LIMA1-211ENST00000552338 SRSF12Q8WXF0 261 aaKnown RBP7.56□□□□□ -1.2
LIMA1-211ENST00000552338 SMIM8Q96KF7 97 aa7.56□□□□□ -1.2
LIMA1-211ENST00000552338 CIB3Q96Q77 187 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-211ENST00000552338 RAB40CQ96S21 281 aa7.56□□□□□ -1.2
LIMA1-211ENST00000552338 NEURL2Q9BR09 285 aa7.56□□□□□ -1.2
LIMA1-211ENST00000552338 RNF126Q9BV68 326 aa7.56□□□□□ -1.2
LIMA1-211ENST00000552338 PRSS22Q9GZN4 317 aa7.56□□□□□ -1.2
LIMA1-211ENST00000552338 NPFFR1Q9GZQ6 430 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms