RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 RPUSD1Q9UJJ7 312 aaKnown RBP13.51□□□□□ -0.25
CHMP1A-204ENST00000547687 IFNA17P01571 189 aa13.5□□□□□ -0.25
CHMP1A-204ENST00000547687 IGHV2-70P01814 119 aa13.5□□□□□ -0.25
CHMP1A-204ENST00000547687 DAOP14920 347 aa13.5□□□□□ -0.25
CHMP1A-204ENST00000547687 THBS3P49746 956 aa13.5□□□□□ -0.25
CHMP1A-204ENST00000547687 OR2B8PP59922 312 aa13.5□□□□□ -0.25
CHMP1A-204ENST00000547687 RPL31P62899 125 aaKnown RBP13.5□□□□□ -0.25
CHMP1A-204ENST00000547687 AVPI1Q5T686 147 aa13.5□□□□□ -0.25
CHMP1A-204ENST00000547687 OR4S2Q8NH73 311 aa13.5□□□□□ -0.25
CHMP1A-204ENST00000547687 ZNF251Q9BRH9 671 aa13.5□□□□□ -0.25
CHMP1A-204ENST00000547687 PMS2P5A8MQ11 134 aa13.49□□□□□ -0.25
CHMP1A-204ENST00000547687 AARDQ4LEZ3 155 aa13.49□□□□□ -0.25
CHMP1A-204ENST00000547687 VKORC1L1Q8N0U8 176 aa13.49□□□□□ -0.25
CHMP1A-204ENST00000547687 OR10P1Q8NGE3 313 aa13.49□□□□□ -0.25
CHMP1A-204ENST00000547687 H1FXQ92522 213 aaKnown RBP13.49□□□□□ -0.25
CHMP1A-204ENST00000547687 TAF15Q92804 592 aaKnown RBP eCLIP13.49□□□□□ -0.25
CHMP1A-204ENST00000547687 ADTRPQ96IZ2 230 aa13.49□□□□□ -0.25
CHMP1A-204ENST00000547687 GAL3ST2Q9H3Q3 398 aa13.49□□□□□ -0.25
CHMP1A-204ENST00000547687 IGHV4-30-2A0A087WSY4 118 aa13.49□□□□□ -0.25
CHMP1A-204ENST00000547687 UBE2L5PA0A1B0GUS4 154 aa13.49□□□□□ -0.25
CHMP1A-204ENST00000547687 RBFOX3A6NFN3 312 aa13.49□□□□□ -0.25
CHMP1A-204ENST00000547687 HBE1P02100 147 aa13.49□□□□□ -0.25
CHMP1A-204ENST00000547687 RAB2AP61019 212 aa13.49□□□□□ -0.25
CHMP1A-204ENST00000547687 SERF2P84101 59 aa13.49□□□□□ -0.25
CHMP1A-204ENST00000547687 CLRN3Q8NCR9 226 aa13.49□□□□□ -0.25
CHMP1A-204ENST00000547687 OR10A7Q8NGE5 316 aa13.49□□□□□ -0.25
CHMP1A-204ENST00000547687 RARRES2Q99969 163 aa13.49□□□□□ -0.25
CHMP1A-204ENST00000547687 HIPK2Q9H2X6 1198 aa13.49□□□□□ -0.25
CHMP1A-204ENST00000547687 FSTL3O95633 263 aa13.48□□□□□ -0.25
CHMP1A-204ENST00000547687 SPCS3P61009 180 aa13.48□□□□□ -0.25
CHMP1A-204ENST00000547687 TMEM88Q6PEY1 159 aa13.48□□□□□ -0.25
CHMP1A-204ENST00000547687 SLC25A48Q6ZT89 311 aaKnown RBP13.48□□□□□ -0.25
CHMP1A-204ENST00000547687 ZNF383Q8NA42 475 aa13.48□□□□□ -0.25
CHMP1A-204ENST00000547687 PINX1Q96BK5 328 aaKnown RBP13.48□□□□□ -0.25
CHMP1A-204ENST00000547687 TMEM147Q9BVK8 224 aa13.48□□□□□ -0.25
CHMP1A-204ENST00000547687 SLC35B3Q9H1N7 401 aa13.48□□□□□ -0.25
CHMP1A-204ENST00000547687 SMDT1Q9H4I9 107 aa13.48□□□□□ -0.25
CHMP1A-204ENST00000547687 RPRMQ9NS64 109 aa13.48□□□□□ -0.25
CHMP1A-204ENST00000547687 TMEM140Q9NV12 185 aa13.48□□□□□ -0.25
CHMP1A-204ENST00000547687 KIAA1456Q9P272 454 aa13.48□□□□□ -0.25
CHMP1A-204ENST00000547687 LY86O95711 162 aa13.47□□□□□ -0.25
CHMP1A-204ENST00000547687 ATF4P18848 351 aaPredicted RBP13.47□□□□□ -0.25
CHMP1A-204ENST00000547687 ERVFRD-1P60508 538 aa13.47□□□□□ -0.25
CHMP1A-204ENST00000547687 RPS16P62249 146 aaKnown RBP13.47□□□□□ -0.25
CHMP1A-204ENST00000547687 GNB2P62879 340 aa13.47□□□□□ -0.25
CHMP1A-204ENST00000547687 RELBQ01201 579 aa13.47□□□□□ -0.25
CHMP1A-204ENST00000547687 TMEM200BQ69YZ2 307 aa13.47□□□□□ -0.25
CHMP1A-204ENST00000547687 DHRS7BQ6IAN0 325 aaPredicted RBP13.47□□□□□ -0.25
CHMP1A-204ENST00000547687 OR52E5Q8NH55 327 aa13.47□□□□□ -0.25
CHMP1A-204ENST00000547687 VSIRQ9H7M9 311 aa13.47□□□□□ -0.25
CHMP1A-204ENST00000547687 MALRD1Q5VYJ5 2156 aa13.47□□□□□ -0.25
CHMP1A-204ENST00000547687 RBMXL1Q96E39 390 aaKnown RBP13.47□□□□□ -0.25
CHMP1A-204ENST00000547687 ZNF714Q96N38 554 aa13.47□□□□□ -0.25
CHMP1A-204ENST00000547687 CLCC1Q96S66 551 aa13.47□□□□□ -0.25
CHMP1A-204ENST00000547687 TRAV3A0A0B4J244 114 aa13.46□□□□□ -0.25
CHMP1A-204ENST00000547687 TRAV1-1A0A0B4J248 108 aa13.46□□□□□ -0.25
CHMP1A-204ENST00000547687 CCL3L1P16619 93 aa13.46□□□□□ -0.25
CHMP1A-204ENST00000547687 CBLN2Q8IUK8 224 aa13.46□□□□□ -0.25
CHMP1A-204ENST00000547687 TIMM9Q9Y5J7 89 aa13.46□□□□□ -0.25
CHMP1A-204ENST00000547687 OR13C7P0DN81 318 aa13.46□□□□□ -0.26
CHMP1A-204ENST00000547687 RIPPLY3P57055 190 aa13.46□□□□□ -0.26
CHMP1A-204ENST00000547687 RPP30P78346 268 aaKnown RBP13.46□□□□□ -0.26
CHMP1A-204ENST00000547687 HAGHQ16775 308 aa13.46□□□□□ -0.26
CHMP1A-204ENST00000547687 TMEM41BQ5BJD5 291 aa13.46□□□□□ -0.26
CHMP1A-204ENST00000547687 HEPN1Q6WQI6 88 aa13.46□□□□□ -0.26
CHMP1A-204ENST00000547687 ZNF841Q6ZN19 808 aa13.46□□□□□ -0.26
CHMP1A-204ENST00000547687 CENPVQ7Z7K6 275 aaPredicted RBP13.46□□□□□ -0.26
CHMP1A-204ENST00000547687 RAB1CQ92928 201 aa13.46□□□□□ -0.26
CHMP1A-204ENST00000547687 CHODLQ9H9P2 273 aa13.46□□□□□ -0.26
CHMP1A-204ENST00000547687 C15orf62A8K5M9 175 aa13.45□□□□□ -0.26
CHMP1A-204ENST00000547687 EFNA4P52798 201 aa13.45□□□□□ -0.26
CHMP1A-204ENST00000547687 PDLIM3Q53GG5 364 aaPredicted RBP13.45□□□□□ -0.26
CHMP1A-204ENST00000547687 CLEC2AQ6UVW9 174 aa13.45□□□□□ -0.26
CHMP1A-204ENST00000547687 TIMD4Q96H15 378 aa13.45□□□□□ -0.26
CHMP1A-204ENST00000547687 RHOVQ96L33 236 aa13.45□□□□□ -0.26
CHMP1A-204ENST00000547687 SCAF4O95104 1147 aaKnown RBP13.44□□□□□ -0.26
CHMP1A-204ENST00000547687 CT45A6P0DMU7 189 aa13.44□□□□□ -0.26
CHMP1A-204ENST00000547687 CT45A5P0DMU8 189 aa13.44□□□□□ -0.26
CHMP1A-204ENST00000547687 CT45A7P0DMV0 189 aa13.44□□□□□ -0.26
CHMP1A-204ENST00000547687 HOXB4P17483 251 aaPredicted RBP13.44□□□□□ -0.26
CHMP1A-204ENST00000547687 BTF3P20290 206 aaKnown RBP13.44□□□□□ -0.26
CHMP1A-204ENST00000547687 FGF7P21781 194 aa13.44□□□□□ -0.26
CHMP1A-204ENST00000547687 ELLP55199 621 aaPredicted RBP13.44□□□□□ -0.26
CHMP1A-204ENST00000547687 KRTAP1-1Q07627 177 aa13.44□□□□□ -0.26
CHMP1A-204ENST00000547687 VWC2Q2TAL6 325 aa13.44□□□□□ -0.26
CHMP1A-204ENST00000547687 ZNF429Q86V71 674 aa13.44□□□□□ -0.26
CHMP1A-204ENST00000547687 MBD3L1Q8WWY6 194 aa13.44□□□□□ -0.26
CHMP1A-204ENST00000547687 HEYLQ9NQ87 328 aaPredicted RBP13.44□□□□□ -0.26
CHMP1A-204ENST00000547687 ZNRD1Q9P1U0 126 aa13.44□□□□□ -0.26
CHMP1A-204ENST00000547687 HRASP01112 189 aa13.44□□□□□ -0.26
CHMP1A-204ENST00000547687 IFNA10P01566 189 aa13.44□□□□□ -0.26
CHMP1A-204ENST00000547687 VDAC2P45880 294 aaPredicted RBP13.44□□□□□ -0.26
CHMP1A-204ENST00000547687 ZNF726P1Q15940 193 aa13.44□□□□□ -0.26
CHMP1A-204ENST00000547687 OR4A47Q6IF82 309 aa13.44□□□□□ -0.26
CHMP1A-204ENST00000547687 CLDND2Q8NHS1 167 aa13.44□□□□□ -0.26
CHMP1A-204ENST00000547687 FAM168AQ92567 244 aa13.44□□□□□ -0.26
CHMP1A-204ENST00000547687 ARG1P05089 322 aa13.43□□□□□ -0.26
CHMP1A-204ENST00000547687 HNF4GQ14541 408 aa13.43□□□□□ -0.26
CHMP1A-204ENST00000547687 ICAM4Q14773 271 aa13.43□□□□□ -0.26
CHMP1A-204ENST00000547687 AKIRIN2Q53H80 203 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms