RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 IGKV1D-39P04432 117 aa10.81□□□□□ -0.68
PTCH1-213ENST00000546820 TCRBP04435 133 aa10.81□□□□□ -0.68
PTCH1-213ENST00000546820 CD28P10747 220 aa10.81□□□□□ -0.68
PTCH1-213ENST00000546820 PPIFP30405 207 aaKnown RBP10.81□□□□□ -0.68
PTCH1-213ENST00000546820 BTCP35070 178 aa10.81□□□□□ -0.68
PTCH1-213ENST00000546820 SRSF4Q08170 494 aaKnown RBP10.81□□□□□ -0.68
PTCH1-213ENST00000546820 FOXE3Q13461 319 aa10.81□□□□□ -0.68
PTCH1-213ENST00000546820 TMEM187Q14656 261 aa10.81□□□□□ -0.68
PTCH1-213ENST00000546820 TMEM268Q5VZI3 342 aa10.81□□□□□ -0.68
PTCH1-213ENST00000546820 FAM219AQ8IW50 185 aa10.81□□□□□ -0.68
PTCH1-213ENST00000546820 SELENOHQ8IZQ5 122 aaKnown RBP10.81□□□□□ -0.68
PTCH1-213ENST00000546820 C11orf44Q8N8P7 122 aa10.81□□□□□ -0.68
PTCH1-213ENST00000546820 OR5M8Q8NGP6 311 aa10.81□□□□□ -0.68
PTCH1-213ENST00000546820 TMEM56Q96MV1 263 aa10.81□□□□□ -0.68
PTCH1-213ENST00000546820 FYTTD1Q96QD9 318 aaKnown RBP10.81□□□□□ -0.68
PTCH1-213ENST00000546820 ZFP57Q9NU63 452 aa10.81□□□□□ -0.68
PTCH1-213ENST00000546820 TBC1D24Q9ULP9 559 aa10.81□□□□□ -0.68
PTCH1-213ENST00000546820 FOXA2Q9Y261 457 aaPredicted RBP10.81□□□□□ -0.68
PTCH1-213ENST00000546820 FBXO7Q9Y3I1 522 aa10.81□□□□□ -0.68
PTCH1-213ENST00000546820 TMEM56-RWDD3S4R434 201 aa10.81□□□□□ -0.68
PTCH1-213ENST00000546820 PLXNB1O43157 2135 aa10.81□□□□□ -0.68
PTCH1-213ENST00000546820 TRAV3A0A0B4J244 114 aa10.8□□□□□ -0.68
PTCH1-213ENST00000546820 A0A1W2PN81 502 aa10.8□□□□□ -0.68
PTCH1-213ENST00000546820 SFT2D2O95562 160 aa10.8□□□□□ -0.68
PTCH1-213ENST00000546820 CHRNA7P36544 502 aa10.8□□□□□ -0.68
PTCH1-213ENST00000546820 SUPT4H1P63272 117 aaKnown RBP10.8□□□□□ -0.68
PTCH1-213ENST00000546820 SSBP2P81877 361 aaPredicted RBP10.8□□□□□ -0.68
PTCH1-213ENST00000546820 CD83Q01151 205 aa10.8□□□□□ -0.68
PTCH1-213ENST00000546820 CFHR3Q02985 330 aa10.8□□□□□ -0.68
PTCH1-213ENST00000546820 THOC7Q6I9Y2 204 aaKnown RBP10.8□□□□□ -0.68
PTCH1-213ENST00000546820 OR1L8Q8NGR8 309 aa10.8□□□□□ -0.68
PTCH1-213ENST00000546820 ENKURQ8TC29 256 aa10.8□□□□□ -0.68
PTCH1-213ENST00000546820 ALX4Q9H161 411 aaPredicted RBP10.8□□□□□ -0.68
PTCH1-213ENST00000546820 FLVCR2Q9UPI3 526 aa10.8□□□□□ -0.68
PTCH1-213ENST00000546820 OR51B2Q9Y5P1 312 aa10.8□□□□□ -0.68
PTCH1-213ENST00000546820 TSSC4Q9Y5U2 329 aaPredicted RBP10.8□□□□□ -0.68
PTCH1-213ENST00000546820 TEX50A0A1B0GTY4 177 aa10.79□□□□□ -0.68
PTCH1-213ENST00000546820 IGKV1-5P01602 117 aa10.79□□□□□ -0.68
PTCH1-213ENST00000546820 IGLV1-40P01703 118 aa10.79□□□□□ -0.68
PTCH1-213ENST00000546820 H2AFB2P0C5Z0 115 aa10.79□□□□□ -0.68
PTCH1-213ENST00000546820 OR4E1P0C645 316 aa10.79□□□□□ -0.68
PTCH1-213ENST00000546820 OR9G9P0C7N8 305 aa10.79□□□□□ -0.68
PTCH1-213ENST00000546820 TRAPPC2P0DI81 140 aa10.79□□□□□ -0.68
PTCH1-213ENST00000546820 TRAPPC2BP0DI82 140 aa10.79□□□□□ -0.68
PTCH1-213ENST00000546820 PF4V1P10720 104 aa10.79□□□□□ -0.68
PTCH1-213ENST00000546820 IFITM3Q01628 133 aa10.79□□□□□ -0.68
PTCH1-213ENST00000546820 PPP1R1AQ13522 171 aa10.79□□□□□ -0.68
PTCH1-213ENST00000546820 C4orf46Q504U0 113 aa10.79□□□□□ -0.68
PTCH1-213ENST00000546820 C10orf99Q6UWK7 81 aa10.79□□□□□ -0.68
PTCH1-213ENST00000546820 HSD17B13Q7Z5P4 300 aaPredicted RBP10.79□□□□□ -0.68
PTCH1-213ENST00000546820 NDUFA11Q86Y39 141 aa10.79□□□□□ -0.68
PTCH1-213ENST00000546820 MRPL41Q8IXM3 137 aaKnown RBP10.79□□□□□ -0.68
PTCH1-213ENST00000546820 OR5T1Q8NG75 326 aa10.79□□□□□ -0.68
PTCH1-213ENST00000546820 OR5B3Q8NH48 314 aa10.79□□□□□ -0.68
PTCH1-213ENST00000546820 LSM10Q969L4 123 aaKnown RBP10.79□□□□□ -0.68
PTCH1-213ENST00000546820 CITED2Q99967 270 aaPredicted RBP10.79□□□□□ -0.68
PTCH1-213ENST00000546820 SRSF8Q9BRL6 282 aaKnown RBP10.79□□□□□ -0.68
PTCH1-213ENST00000546820 PDCD10Q9BUL8 212 aa10.79□□□□□ -0.68
PTCH1-213ENST00000546820 QTRT1Q9BXR0 403 aaKnown RBP10.79□□□□□ -0.68
PTCH1-213ENST00000546820 C20orf85Q9H1P6 137 aa10.79□□□□□ -0.68
PTCH1-213ENST00000546820 ZNF355PQ9NSJ1 428 aa10.79□□□□□ -0.68
PTCH1-213ENST00000546820 CACFD1Q9UGQ2 172 aa10.79□□□□□ -0.68
PTCH1-213ENST00000546820 NSG2Q9Y328 171 aa10.79□□□□□ -0.68
PTCH1-213ENST00000546820 A0A0B4J2A0 478 aa10.78□□□□□ -0.68
PTCH1-213ENST00000546820 DUXBA0A1W2PPF3 345 aa10.78□□□□□ -0.68
PTCH1-213ENST00000546820 C9orf170A2RU37 121 aa10.78□□□□□ -0.68
PTCH1-213ENST00000546820 C15orf61A6NNL5 157 aa10.78□□□□□ -0.68
PTCH1-213ENST00000546820 H3BUA1 57 aa10.78□□□□□ -0.68
PTCH1-213ENST00000546820 M0QZ24 198 aa10.78□□□□□ -0.68
PTCH1-213ENST00000546820 DHFRP00374 187 aa10.78□□□□□ -0.68
PTCH1-213ENST00000546820 HLA-AP01891 365 aaKnown RBP10.78□□□□□ -0.68
PTCH1-213ENST00000546820 PSMB8P28062 276 aa10.78□□□□□ -0.68
PTCH1-213ENST00000546820 RAB9AP51151 201 aa10.78□□□□□ -0.68
PTCH1-213ENST00000546820 OR2B8PP59922 312 aa10.78□□□□□ -0.68
PTCH1-213ENST00000546820 C19orf54Q5BKX5 351 aa10.78□□□□□ -0.68
PTCH1-213ENST00000546820 KHDC1LQ5JSQ8 128 aa10.78□□□□□ -0.68
PTCH1-213ENST00000546820 TTC9CQ8N5M4 171 aa10.78□□□□□ -0.68
PTCH1-213ENST00000546820 COQ8AQ8NI60 647 aa10.78□□□□□ -0.68
PTCH1-213ENST00000546820 LHFPL5Q8TAF8 219 aa10.78□□□□□ -0.68
PTCH1-213ENST00000546820 CASTOR1Q8WTX7 329 aa10.78□□□□□ -0.68
PTCH1-213ENST00000546820 SLA2Q9H6Q3 261 aa10.78□□□□□ -0.68
PTCH1-213ENST00000546820 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.78□□□□□ -0.68
PTCH1-213ENST00000546820 TMEM14BQ9NUH8 114 aa10.78□□□□□ -0.68
PTCH1-213ENST00000546820 NUDT15Q9NV35 164 aa10.78□□□□□ -0.68
PTCH1-213ENST00000546820 SHPKQ9UHJ6 478 aa10.78□□□□□ -0.68
PTCH1-213ENST00000546820 ZNF257Q9Y2Q1 563 aa10.78□□□□□ -0.68
PTCH1-213ENST00000546820 TNCP24821 2201 aa10.78□□□□□ -0.68
PTCH1-213ENST00000546820 TRAV6A0A075B6T7 132 aa10.77□□□□□ -0.69
PTCH1-213ENST00000546820 APELAP0DMC3 54 aa10.77□□□□□ -0.69
PTCH1-213ENST00000546820 ANXA7P20073 488 aaKnown RBP10.77□□□□□ -0.69
PTCH1-213ENST00000546820 HSPE1P61604 102 aaKnown RBP10.77□□□□□ -0.69
PTCH1-213ENST00000546820 C2orf68Q2NKX9 166 aa10.77□□□□□ -0.69
PTCH1-213ENST00000546820 TCTEX1D4Q5JR98 221 aa10.77□□□□□ -0.69
PTCH1-213ENST00000546820 C10orf55Q5SWW7 151 aa10.77□□□□□ -0.69
PTCH1-213ENST00000546820 PLET1Q6UQ28 207 aa10.77□□□□□ -0.69
PTCH1-213ENST00000546820 LYG2Q86SG7 212 aa10.77□□□□□ -0.69
PTCH1-213ENST00000546820 ZNF429Q86V71 674 aa10.77□□□□□ -0.69
PTCH1-213ENST00000546820 SLC35G3Q8N808 338 aa10.77□□□□□ -0.69
PTCH1-213ENST00000546820 RNF152Q8N8N0 203 aa10.77□□□□□ -0.69
PTCH1-213ENST00000546820 LRTM2Q8N967 370 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms