RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 KIAA1549LQ6ZVL6 1849 aa13.12□□□□□ -0.31
CUX1-211ENST00000546411 CD5P06127 495 aa13.12□□□□□ -0.31
CUX1-211ENST00000546411 ATP5G3P48201 142 aa13.12□□□□□ -0.31
CUX1-211ENST00000546411 IQCJQ1A5X6 159 aa13.12□□□□□ -0.31
CUX1-211ENST00000546411 OR5AU1Q8NGC0 362 aa13.12□□□□□ -0.31
CUX1-211ENST00000546411 OR1L6Q8NGR2 347 aa13.12□□□□□ -0.31
CUX1-211ENST00000546411 Q8WTZ3 238 aa13.12□□□□□ -0.31
CUX1-211ENST00000546411 PARD6AQ9NPB6 346 aa13.12□□□□□ -0.31
CUX1-211ENST00000546411 PGPEP1LA6NFU8 196 aa13.12□□□□□ -0.31
CUX1-211ENST00000546411 KBTBD11O94819 623 aa13.12□□□□□ -0.31
CUX1-211ENST00000546411 NCOR2Q9Y618 2525 aa13.11□□□□□ -0.31
CUX1-211ENST00000546411 SRSF4Q08170 494 aaKnown RBP13.11□□□□□ -0.31
CUX1-211ENST00000546411 FAM222BQ8WU58 562 aa13.11□□□□□ -0.31
CUX1-211ENST00000546411 MRPL37Q9BZE1 423 aaKnown RBP13.11□□□□□ -0.31
CUX1-211ENST00000546411 RAB1BQ9H0U4 201 aa13.11□□□□□ -0.31
CUX1-211ENST00000546411 ZDHHC8Q9ULC8 765 aa13.11□□□□□ -0.31
CUX1-211ENST00000546411 C20orf202A1L168 122 aa13.11□□□□□ -0.31
CUX1-211ENST00000546411 PQLC2Q6ZP29 291 aa13.11□□□□□ -0.31
CUX1-211ENST00000546411 OR8I2Q8N0Y5 310 aa13.11□□□□□ -0.31
CUX1-211ENST00000546411 STPG3Q8N7X2 389 aa13.11□□□□□ -0.31
CUX1-211ENST00000546411 NPIPB3Q92617 1050 aa13.11□□□□□ -0.31
CUX1-211ENST00000546411 FAM122AQ96E09 287 aa13.11□□□□□ -0.31
CUX1-211ENST00000546411 ARF6P62330 175 aa13.11□□□□□ -0.31
CUX1-211ENST00000546411 ARL2-SNX15V9GYD0 113 aa13.11□□□□□ -0.31
CUX1-211ENST00000546411 MPDU1O75352 247 aa13.1□□□□□ -0.31
CUX1-211ENST00000546411 OR4A47Q6IF82 309 aa13.1□□□□□ -0.31
CUX1-211ENST00000546411 ETFRF1Q6IPR1 90 aa13.1□□□□□ -0.31
CUX1-211ENST00000546411 DTX1Q86Y01 620 aa13.1□□□□□ -0.31
CUX1-211ENST00000546411 C1orf174Q8IYL3 243 aa13.1□□□□□ -0.31
CUX1-211ENST00000546411 OR2D3Q8NGH3 330 aa13.1□□□□□ -0.31
CUX1-211ENST00000546411 IL19Q9UHD0 177 aa13.1□□□□□ -0.31
CUX1-211ENST00000546411 AUP1Q9Y679 476 aa13.1□□□□□ -0.31
CUX1-211ENST00000546411 BPTFQ12830 3046 aa13.1□□□□□ -0.31
CUX1-211ENST00000546411 GRIFINA4D1Z8 144 aa13.1□□□□□ -0.31
CUX1-211ENST00000546411 C1QTNF9BB2RNN3 333 aa13.1□□□□□ -0.31
CUX1-211ENST00000546411 AGAP20933 346 aa13.1□□□□□ -0.31
CUX1-211ENST00000546411 G0S2P27469 103 aa13.1□□□□□ -0.31
CUX1-211ENST00000546411 BSPH1Q075Z2 132 aa13.1□□□□□ -0.31
CUX1-211ENST00000546411 TMUB1Q9BVT8 246 aa13.1□□□□□ -0.31
CUX1-211ENST00000546411 ELOA3CA0A087WX78 387 aaPredicted RBP13.1□□□□□ -0.31
CUX1-211ENST00000546411 IGFBP2P18065 325 aa13.1□□□□□ -0.31
CUX1-211ENST00000546411 RPL27AP46776 148 aaKnown RBP13.1□□□□□ -0.31
CUX1-211ENST00000546411 P2RX4Q99571 388 aa13.1□□□□□ -0.31
CUX1-211ENST00000546411 VAMP8Q9BV40 100 aa13.1□□□□□ -0.31
CUX1-211ENST00000546411 IGHV3-35A0A0C4DH35 117 aa13.09□□□□□ -0.31
CUX1-211ENST00000546411 TMEM50AO95807 157 aa13.09□□□□□ -0.31
CUX1-211ENST00000546411 ZNF137PP52743 207 aa13.09□□□□□ -0.31
CUX1-211ENST00000546411 MFAP2P55001 183 aa13.09□□□□□ -0.31
CUX1-211ENST00000546411 MST1LQ2TV78 715 aa13.09□□□□□ -0.31
CUX1-211ENST00000546411 OR8B3Q8NGG8 313 aa13.09□□□□□ -0.31
CUX1-211ENST00000546411 OR8B2Q96RD0 313 aa13.09□□□□□ -0.31
CUX1-211ENST00000546411 NABP2Q9BQ15 211 aa13.09□□□□□ -0.31
CUX1-211ENST00000546411 SFXN3Q9BWM7 321 aa13.09□□□□□ -0.31
CUX1-211ENST00000546411 CSPG4Q6UVK1 2322 aa13.09□□□□□ -0.31
CUX1-211ENST00000546411 TMSB15BA0A087X1C1 80 aa13.09□□□□□ -0.31
CUX1-211ENST00000546411 LYNX1G3V0Z9 82 aa13.09□□□□□ -0.31
CUX1-211ENST00000546411 MLNRO43193 412 aa13.09□□□□□ -0.31
CUX1-211ENST00000546411 GNG7O60262 68 aa13.09□□□□□ -0.31
CUX1-211ENST00000546411 LYNX1P0DP58 116 aa13.09□□□□□ -0.31
CUX1-211ENST00000546411 OR4F17Q8NGA8 305 aa13.09□□□□□ -0.31
CUX1-211ENST00000546411 PAXXQ9BUH6 204 aa13.09□□□□□ -0.31
CUX1-211ENST00000546411 PCSK4Q6UW60 755 aa13.09□□□□□ -0.31
CUX1-211ENST00000546411 ZNF785A8K8V0 405 aa13.09□□□□□ -0.31
CUX1-211ENST00000546411 MORN2Q502X0 79 aa13.09□□□□□ -0.31
CUX1-211ENST00000546411 DOLPP1Q86YN1 238 aa13.09□□□□□ -0.31
CUX1-211ENST00000546411 PAM16Q9Y3D7 125 aa13.09□□□□□ -0.31
CUX1-211ENST00000546411 OR9G9P0C7N8 305 aa13.08□□□□□ -0.32
CUX1-211ENST00000546411 USF1P22415 310 aaPredicted RBP13.08□□□□□ -0.32
CUX1-211ENST00000546411 COLCA1Q6ZS62 124 aa13.08□□□□□ -0.32
CUX1-211ENST00000546411 RASL11BQ9BPW5 248 aa13.08□□□□□ -0.32
CUX1-211ENST00000546411 IGKV3-7A0A075B6H7 116 aa13.08□□□□□ -0.32
CUX1-211ENST00000546411 COLCA2A8K830 154 aa13.08□□□□□ -0.32
CUX1-211ENST00000546411 SLC17A3O00476 420 aa13.08□□□□□ -0.32
CUX1-211ENST00000546411 MOSP00540 346 aa13.08□□□□□ -0.32
CUX1-211ENST00000546411 CGAP01215 116 aa13.08□□□□□ -0.32
CUX1-211ENST00000546411 ZNF146Q15072 292 aa13.08□□□□□ -0.32
CUX1-211ENST00000546411 NOL4LQ96MY1 436 aaPredicted RBP13.08□□□□□ -0.32
CUX1-211ENST00000546411 KBTBD11-OT1A0A1B0GTJ5 212 aa13.08□□□□□ -0.32
CUX1-211ENST00000546411 PRB4P10163 310 aaPredicted RBP13.08□□□□□ -0.32
CUX1-211ENST00000546411 C1orf162Q8NEQ5 155 aaPredicted RBP13.08□□□□□ -0.32
CUX1-211ENST00000546411 STARD4Q96DR4 205 aa13.08□□□□□ -0.32
CUX1-211ENST00000546411 SSBP3Q9BWW4 388 aaPredicted RBP13.08□□□□□ -0.32
CUX1-211ENST00000546411 UBTD1Q9HAC8 227 aa13.08□□□□□ -0.32
CUX1-211ENST00000546411 S4R3C0 116 aa13.08□□□□□ -0.32
CUX1-211ENST00000546411 SAA2-SAA4A0A096LPE2 208 aa13.07□□□□□ -0.32
CUX1-211ENST00000546411 SAA2P0DJI9 122 aaPredicted RBP13.07□□□□□ -0.32
CUX1-211ENST00000546411 SSX7Q7RTT5 188 aa13.07□□□□□ -0.32
CUX1-211ENST00000546411 RPRMLQ8N4K4 120 aa13.07□□□□□ -0.32
CUX1-211ENST00000546411 AAMDCQ9H7C9 122 aa13.07□□□□□ -0.32
CUX1-211ENST00000546411 DENND4AQ7Z401 1863 aa13.07□□□□□ -0.32
CUX1-211ENST00000546411 IL6RP08887 468 aaPredicted RBP13.07□□□□□ -0.32
CUX1-211ENST00000546411 COL8A1P27658 744 aa13.07□□□□□ -0.32
CUX1-211ENST00000546411 Q6P435 159 aa13.07□□□□□ -0.32
CUX1-211ENST00000546411 ASCL4Q6XD76 172 aa13.07□□□□□ -0.32
CUX1-211ENST00000546411 RPP25LQ8N5L8 163 aaKnown RBP13.07□□□□□ -0.32
CUX1-211ENST00000546411 NUBP1P53384 320 aa13.07□□□□□ -0.32
CUX1-211ENST00000546411 ARL16Q0P5N6 197 aa13.07□□□□□ -0.32
CUX1-211ENST00000546411 HLA-DRB5Q30154 266 aa13.07□□□□□ -0.32
CUX1-211ENST00000546411 VN1R17PQ8TDU5 208 aa13.07□□□□□ -0.32
CUX1-211ENST00000546411 METTL1Q9UBP6 276 aaKnown RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms