RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 HLA-AP01891 365 aaKnown RBP9.54□□□□□ -0.88
USP28-212ENST00000544750 ZNF182P17025 639 aaPredicted RBP9.54□□□□□ -0.88
USP28-212ENST00000544750 NAT1P18440 290 aa9.54□□□□□ -0.88
USP28-212ENST00000544750 BMI1P35226 326 aa9.54□□□□□ -0.88
USP28-212ENST00000544750 CBX5P45973 191 aa9.54□□□□□ -0.88
USP28-212ENST00000544750 RPL30P62888 115 aaKnown RBP9.54□□□□□ -0.88
USP28-212ENST00000544750 PRSS8Q16651 343 aa9.54□□□□□ -0.88
USP28-212ENST00000544750 Q6ZWC4 215 aa9.54□□□□□ -0.88
USP28-212ENST00000544750 GPHB5Q86YW7 130 aa9.54□□□□□ -0.88
USP28-212ENST00000544750 CLVS1Q8IUQ0 354 aaPredicted RBP9.54□□□□□ -0.88
USP28-212ENST00000544750 TTC9CQ8N5M4 171 aa9.54□□□□□ -0.88
USP28-212ENST00000544750 TEX45Q8NA69 505 aa9.54□□□□□ -0.88
USP28-212ENST00000544750 PHB2Q99623 299 aa9.54□□□□□ -0.88
USP28-212ENST00000544750 MLXQ9UH92 298 aa9.54□□□□□ -0.88
USP28-212ENST00000544750 RBMX2Q9Y388 322 aaKnown RBP9.54□□□□□ -0.88
USP28-212ENST00000544750 RBM7Q9Y580 266 aaKnown RBP9.54□□□□□ -0.88
USP28-212ENST00000544750 SELENOKQ9Y6D0 94 aa9.54□□□□□ -0.88
USP28-212ENST00000544750 A8MWP6 167 aa9.53□□□□□ -0.88
USP28-212ENST00000544750 SHOXO15266 292 aa9.53□□□□□ -0.88
USP28-212ENST00000544750 SPRY2O43597 315 aa9.53□□□□□ -0.88
USP28-212ENST00000544750 GGCTO75223 188 aaKnown RBP9.53□□□□□ -0.88
USP28-212ENST00000544750 OR2C1O95371 312 aa9.53□□□□□ -0.88
USP28-212ENST00000544750 RPL5P46777 297 aaKnown RBP9.53□□□□□ -0.88
USP28-212ENST00000544750 ARPC4P59998 168 aa9.53□□□□□ -0.88
USP28-212ENST00000544750 UBE2KP61086 200 aa9.53□□□□□ -0.88
USP28-212ENST00000544750 TAGLNQ01995 201 aaKnown RBP9.53□□□□□ -0.88
USP28-212ENST00000544750 TNXAQ16473 311 aa9.53□□□□□ -0.88
USP28-212ENST00000544750 C15orf32Q32M92 178 aa9.53□□□□□ -0.88
USP28-212ENST00000544750 FAM209BQ5JX69 171 aa9.53□□□□□ -0.88
USP28-212ENST00000544750 NECAP1Q8NC96 275 aa9.53□□□□□ -0.88
USP28-212ENST00000544750 OR5AP2Q8NGF4 316 aa9.53□□□□□ -0.88
USP28-212ENST00000544750 OR52B4Q8NGK2 314 aa9.53□□□□□ -0.88
USP28-212ENST00000544750 GPX8Q8TED1 209 aa9.53□□□□□ -0.88
USP28-212ENST00000544750 DNAH11Q96DT5 4516 aa9.53□□□□□ -0.88
USP28-212ENST00000544750 ABCA13Q86UQ4 5058 aa9.52□□□□□ -0.88
USP28-212ENST00000544750 PPYP01298 95 aa9.52□□□□□ -0.89
USP28-212ENST00000544750 FCGR2CP31995 323 aa9.52□□□□□ -0.89
USP28-212ENST00000544750 PRSS3P35030 304 aa9.52□□□□□ -0.89
USP28-212ENST00000544750 TMBIM6P55061 237 aa9.52□□□□□ -0.89
USP28-212ENST00000544750 BRWD1-AS2P59051 145 aa9.52□□□□□ -0.89
USP28-212ENST00000544750 CDK10Q15131 360 aa9.52□□□□□ -0.89
USP28-212ENST00000544750 TM4SF20Q53R12 229 aa9.52□□□□□ -0.89
USP28-212ENST00000544750 ZNF57Q68EA5 555 aaPredicted RBP9.52□□□□□ -0.89
USP28-212ENST00000544750 IDO2Q6ZQW0 420 aa9.52□□□□□ -0.89
USP28-212ENST00000544750 DYNC2LI1Q8TCX1 351 aa9.52□□□□□ -0.89
USP28-212ENST00000544750 RAB2BQ8WUD1 216 aa9.52□□□□□ -0.89
USP28-212ENST00000544750 PHLDA1Q8WV24 401 aaPredicted RBP9.52□□□□□ -0.89
USP28-212ENST00000544750 ADTRPQ96IZ2 230 aa9.52□□□□□ -0.89
USP28-212ENST00000544750 CCDC140Q96MF4 163 aa9.52□□□□□ -0.89
USP28-212ENST00000544750 GPHA2Q96T91 129 aa9.52□□□□□ -0.89
USP28-212ENST00000544750 BCL7BQ9BQE9 202 aa9.52□□□□□ -0.89
USP28-212ENST00000544750 MIXL1Q9H2W2 232 aa9.52□□□□□ -0.89
USP28-212ENST00000544750 IFT46Q9NQC8 304 aa9.52□□□□□ -0.89
USP28-212ENST00000544750 OR2J3O76001 311 aa9.51□□□□□ -0.89
USP28-212ENST00000544750 SLC22A5O76082 557 aa9.51□□□□□ -0.89
USP28-212ENST00000544750 CRYZL1O95825 349 aa9.51□□□□□ -0.89
USP28-212ENST00000544750 C8orf88P0DMB2 117 aa9.51□□□□□ -0.89
USP28-212ENST00000544750 RRASP10301 218 aa9.51□□□□□ -0.89
USP28-212ENST00000544750 PRR20EP86478 221 aa9.51□□□□□ -0.89
USP28-212ENST00000544750 PRR20CP86479 221 aa9.51□□□□□ -0.89
USP28-212ENST00000544750 PRR20DP86480 221 aa9.51□□□□□ -0.89
USP28-212ENST00000544750 PRR20BP86481 221 aa9.51□□□□□ -0.89
USP28-212ENST00000544750 PRR20AP86496 221 aa9.51□□□□□ -0.89
USP28-212ENST00000544750 RTL8BQ17RB0 113 aa9.51□□□□□ -0.89
USP28-212ENST00000544750 KLK9Q2XQG4 91 aa9.51□□□□□ -0.89
USP28-212ENST00000544750 DEFB135Q30KP9 77 aa9.51□□□□□ -0.89
USP28-212ENST00000544750 VMA21Q3ZAQ7 101 aa9.51□□□□□ -0.89
USP28-212ENST00000544750 MZT2AQ6P582 158 aa9.51□□□□□ -0.89
USP28-212ENST00000544750 KCTD9Q7L273 389 aa9.51□□□□□ -0.89
USP28-212ENST00000544750 SNX29P2Q8IUI4 249 aa9.51□□□□□ -0.89
USP28-212ENST00000544750 LYSMD2Q8IV50 215 aa9.51□□□□□ -0.89
USP28-212ENST00000544750 UXS1Q8NBZ7 420 aa9.51□□□□□ -0.89
USP28-212ENST00000544750 AP3S1Q92572 193 aa9.51□□□□□ -0.89
USP28-212ENST00000544750 RNF183Q96D59 192 aa9.51□□□□□ -0.89
USP28-212ENST00000544750 ZNF430Q9H8G1 570 aaPredicted RBP9.51□□□□□ -0.89
USP28-212ENST00000544750 CCL28Q9NRJ3 127 aa9.51□□□□□ -0.89
USP28-212ENST00000544750 KLK9Q9UKQ9 250 aa9.51□□□□□ -0.89
USP28-212ENST00000544750 MRPS7Q9Y2R9 242 aaKnown RBP9.51□□□□□ -0.89
USP28-212ENST00000544750 H3BMQ9 156 aa9.5□□□□□ -0.89
USP28-212ENST00000544750 MPPED1O15442 326 aa9.5□□□□□ -0.89
USP28-212ENST00000544750 SCAF4O95104 1147 aaKnown RBP9.5□□□□□ -0.89
USP28-212ENST00000544750 RFX2P48378 723 aa9.5□□□□□ -0.89
USP28-212ENST00000544750 MSMO1Q15800 293 aa9.5□□□□□ -0.89
USP28-212ENST00000544750 ANKRD55Q3KP44 614 aa9.5□□□□□ -0.89
USP28-212ENST00000544750 OR2B11Q5JQS5 317 aa9.5□□□□□ -0.89
USP28-212ENST00000544750 C10orf55Q5SWW7 151 aa9.5□□□□□ -0.89
USP28-212ENST00000544750 DHRS11Q6UWP2 260 aa9.5□□□□□ -0.89
USP28-212ENST00000544750 SECTM1Q8WVN6 248 aa9.5□□□□□ -0.89
USP28-212ENST00000544750 GIMAP1Q8WWP7 306 aa9.5□□□□□ -0.89
USP28-212ENST00000544750 FANCD2OSQ96PS1 177 aa9.5□□□□□ -0.89
USP28-212ENST00000544750 HSD17B10Q99714 261 aaKnown RBP9.5□□□□□ -0.89
USP28-212ENST00000544750 SPIN2AQ99865 258 aa9.5□□□□□ -0.89
USP28-212ENST00000544750 SPIN2BQ9BPZ2 258 aa9.5□□□□□ -0.89
USP28-212ENST00000544750 SCPEP1Q9HB40 452 aa9.5□□□□□ -0.89
USP28-212ENST00000544750 EHFQ9NZC4 300 aa9.5□□□□□ -0.89
USP28-212ENST00000544750 CCDC59Q9P031 241 aaKnown RBP9.5□□□□□ -0.89
USP28-212ENST00000544750 EXTL2Q9UBQ6 330 aa9.5□□□□□ -0.89
USP28-212ENST00000544750 ZNF257Q9Y2Q1 563 aa9.5□□□□□ -0.89
USP28-212ENST00000544750 PKD1P98161 4303 aa9.49□□□□□ -0.89
USP28-212ENST00000544750 TRAV25A0A0B4J276 109 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms