RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 NHLRC3Q5JS37 347 aa3.4□□□□□ -1.87
LIMS1-214ENST00000542845 C10orf55Q5SWW7 151 aa3.4□□□□□ -1.87
LIMS1-214ENST00000542845 GLT8D1Q68CQ7 371 aa3.4□□□□□ -1.87
LIMS1-214ENST00000542845 PET117Q6UWS5 81 aa3.4□□□□□ -1.87
LIMS1-214ENST00000542845 CEACAM19Q7Z692 300 aa3.4□□□□□ -1.87
LIMS1-214ENST00000542845 SLC25A42Q86VD7 318 aa3.4□□□□□ -1.87
LIMS1-214ENST00000542845 STHQ8IWL8 128 aa3.4□□□□□ -1.87
LIMS1-214ENST00000542845 PARP16Q8N5Y8 322 aa3.4□□□□□ -1.87
LIMS1-214ENST00000542845 NKAIN3Q8N8D7 197 aa3.4□□□□□ -1.87
LIMS1-214ENST00000542845 OR5AK2Q8NH90 309 aa3.4□□□□□ -1.87
LIMS1-214ENST00000542845 ORAI1Q96D31 301 aa3.4□□□□□ -1.87
LIMS1-214ENST00000542845 CMTM5Q96DZ9 223 aa3.4□□□□□ -1.87
LIMS1-214ENST00000542845 C17orf77Q96MU5 243 aa3.4□□□□□ -1.87
LIMS1-214ENST00000542845 SPIN2AQ99865 258 aa3.4□□□□□ -1.87
LIMS1-214ENST00000542845 SPIN2BQ9BPZ2 258 aa3.4□□□□□ -1.87
LIMS1-214ENST00000542845 DCUN1D5Q9BTE7 237 aa3.4□□□□□ -1.87
LIMS1-214ENST00000542845 FAAP24Q9BTP7 215 aa3.4□□□□□ -1.87
LIMS1-214ENST00000542845 PRRG3Q9BZD7 231 aa3.4□□□□□ -1.87
LIMS1-214ENST00000542845 AAMDCQ9H7C9 122 aa3.4□□□□□ -1.87
LIMS1-214ENST00000542845 ISG20L2Q9H9L3 353 aaKnown RBP3.4□□□□□ -1.87
LIMS1-214ENST00000542845 PTTG2Q9NZH5 202 aa3.4□□□□□ -1.87
LIMS1-214ENST00000542845 OR1A1Q9P1Q5 309 aa3.4□□□□□ -1.87
LIMS1-214ENST00000542845 DKK2Q9UBU2 259 aa3.4□□□□□ -1.87
LIMS1-214ENST00000542845 WARS2Q9UGM6 360 aaKnown RBP3.4□□□□□ -1.87
LIMS1-214ENST00000542845 SRRM2Q9UQ35 2752 aaKnown RBP3.4□□□□□ -1.87
LIMS1-214ENST00000542845 FLG2Q5D862 2391 aaPredicted RBP3.4□□□□□ -1.87
LIMS1-214ENST00000542845 VPS13BQ7Z7G8 4022 aa3.4□□□□□ -1.87
LIMS1-214ENST00000542845 MYCBP2O75592 4640 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 IGHV3OR16-13A0A075B7E8 117 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 TRBV7-1A0A0A6YYK4 115 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 IGHV3-74A0A0B4J1X5 117 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 MFSD2BA6NFX1 497 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 DNASE2O00115 360 aaPredicted RBP3.39□□□□□ -1.87
LIMS1-214ENST00000542845 RHODO00212 210 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 ZNF780AO75290 641 aaPredicted RBP3.39□□□□□ -1.87
LIMS1-214ENST00000542845 CA11O75493 328 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 GLAP06280 429 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 GALP22466 123 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 ZBTB25P24278 435 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 BDKRB2P30411 391 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 MNAT1P51948 309 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 DEFB131AP59861 70 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 SNRPGP62308 76 aaKnown RBP3.39□□□□□ -1.87
LIMS1-214ENST00000542845 RPS27AP62979 156 aaKnown RBP3.39□□□□□ -1.87
LIMS1-214ENST00000542845 PPP3R1P63098 170 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 GPR176Q14439 515 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 LY6G6FQ5SQ64 297 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 GLIPR1L1Q6UWM5 242 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 LHFPL3Q86UP9 236 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 DHFR2Q86XF0 187 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 DEFB107AQ8IZN7 70 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 GAPTQ8N292 157 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 JAGN1Q8N5M9 183 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 OR6M1Q8NGM8 313 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 OSR1Q8TAX0 266 aaPredicted RBP3.39□□□□□ -1.87
LIMS1-214ENST00000542845 C4orf36Q96KX1 117 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 RNF2Q99496 336 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 ZNF184Q99676 751 aaPredicted RBP3.39□□□□□ -1.87
LIMS1-214ENST00000542845 PDCD1LG2Q9BQ51 273 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 AGMATQ9BSE5 352 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 MAGIXQ9H6Y5 334 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 ZNF430Q9H8G1 570 aaPredicted RBP3.39□□□□□ -1.87
LIMS1-214ENST00000542845 DAZ1Q9NQZ3 744 aaKnown RBP3.39□□□□□ -1.87
LIMS1-214ENST00000542845 IL36GQ9NZH8 169 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 TBC1D24Q9ULP9 559 aa3.39□□□□□ -1.87
LIMS1-214ENST00000542845 IGHV3-21A0A0B4J1V1 117 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 OR2T8A6NH00 312 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 TGOLN2O43493 480 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 SC5DO75845 299 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 CRYZL1O95825 349 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 DHFRP00374 187 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 IFNA5P01569 189 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 HOXB5P09067 269 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 SPART-AS1P0CW21 52 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 MGMTP16455 207 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 CAPGP40121 348 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 DAPP51397 102 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 PSMD7P51665 324 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 PAFAH1B2P68402 229 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 HMGN3Q15651 99 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 ATP6AP1Q15904 470 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 RTL8BQ17RB0 113 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 LIPKQ5VXJ0 399 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 SUMO4Q6EEV6 95 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 ZNF554Q86TJ5 538 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 CADM3Q8N126 398 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 TEX45Q8NA69 505 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 C15orf53Q8NAA6 179 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 UBAC2Q8NBM4 344 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 NEDD4LQ96PU5 975 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 RHPN1-AS1Q9BWJ2 59 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 TM2D2Q9BX73 214 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 TMEM138Q9NPI0 162 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 TMEM14BQ9NUH8 114 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 ARGLU1Q9NWB6 273 aaPredicted RBP3.38□□□□□ -1.87
LIMS1-214ENST00000542845 ZNF257Q9Y2Q1 563 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 RBM7Q9Y580 266 aaKnown RBP3.38□□□□□ -1.87
LIMS1-214ENST00000542845 ETV7Q9Y603 341 aa3.38□□□□□ -1.87
LIMS1-214ENST00000542845 IGHV3OR16-12A0A075B7B8 117 aa3.37□□□□□ -1.87
LIMS1-214ENST00000542845 RPS10-NUDT3A0A1W2PQS6 291 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms