RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 TP53TG1Q9Y2A0 90 aa11.52□□□□□ -0.57
RTN3-211ENST00000542238 IFITM5A6NNB3 132 aa11.51□□□□□ -0.57
RTN3-211ENST00000542238 H3BMQ9 156 aa11.51□□□□□ -0.57
RTN3-211ENST00000542238 SPRY2O43597 315 aa11.51□□□□□ -0.57
RTN3-211ENST00000542238 HRASP01112 189 aa11.51□□□□□ -0.57
RTN3-211ENST00000542238 CLEC3BP05452 202 aa11.51□□□□□ -0.57
RTN3-211ENST00000542238 AREGP15514 252 aa11.51□□□□□ -0.57
RTN3-211ENST00000542238 GALP22466 123 aa11.51□□□□□ -0.57
RTN3-211ENST00000542238 NFYAP23511 347 aaPredicted RBP11.51□□□□□ -0.57
RTN3-211ENST00000542238 TMBIM6P55061 237 aa11.51□□□□□ -0.57
RTN3-211ENST00000542238 RPL30P62888 115 aaKnown RBP11.51□□□□□ -0.57
RTN3-211ENST00000542238 Q6ZWC4 215 aa11.51□□□□□ -0.57
RTN3-211ENST00000542238 LYG2Q86SG7 212 aa11.51□□□□□ -0.57
RTN3-211ENST00000542238 PUSL1Q8N0Z8 303 aaKnown RBP11.51□□□□□ -0.57
RTN3-211ENST00000542238 OR2C3Q8N628 320 aa11.51□□□□□ -0.57
RTN3-211ENST00000542238 OR13F1Q8NGS4 319 aa11.51□□□□□ -0.57
RTN3-211ENST00000542238 FAM210AQ96ND0 272 aa11.51□□□□□ -0.57
RTN3-211ENST00000542238 MGLLQ99685 303 aa11.51□□□□□ -0.57
RTN3-211ENST00000542238 CCDC90BQ9GZT6 254 aa11.51□□□□□ -0.57
RTN3-211ENST00000542238 ATG5Q9H1Y0 275 aa11.51□□□□□ -0.57
RTN3-211ENST00000542238 MRPL27Q9P0M9 148 aaKnown RBP11.51□□□□□ -0.57
RTN3-211ENST00000542238 TRAV1-2A0A0B4J238 106 aa11.5□□□□□ -0.57
RTN3-211ENST00000542238 E7EUB6 86 aa11.5□□□□□ -0.57
RTN3-211ENST00000542238 UBE2CO00762 179 aa11.5□□□□□ -0.57
RTN3-211ENST00000542238 PFDN1O60925 122 aa11.5□□□□□ -0.57
RTN3-211ENST00000542238 CTRB1P17538 263 aa11.5□□□□□ -0.57
RTN3-211ENST00000542238 OR10A3P58181 314 aa11.5□□□□□ -0.57
RTN3-211ENST00000542238 RPL8P62917 257 aaKnown RBP11.5□□□□□ -0.57
RTN3-211ENST00000542238 ZNF585BQ52M93 769 aa11.5□□□□□ -0.57
RTN3-211ENST00000542238 CTRB2Q6GPI1 263 aa11.5□□□□□ -0.57
RTN3-211ENST00000542238 KRTAP17-1Q9BYP8 105 aa11.5□□□□□ -0.57
RTN3-211ENST00000542238 SPATA2Q9UM82 520 aa11.5□□□□□ -0.57
RTN3-211ENST00000542238 UFC1Q9Y3C8 167 aa11.5□□□□□ -0.57
RTN3-211ENST00000542238 IGLV2-14P01704 120 aa11.49□□□□□ -0.57
RTN3-211ENST00000542238 C8orf88P0DMB2 117 aa11.49□□□□□ -0.57
RTN3-211ENST00000542238 MYOD1P15172 320 aa11.49□□□□□ -0.57
RTN3-211ENST00000542238 MYL9P24844 172 aa11.49□□□□□ -0.57
RTN3-211ENST00000542238 ELLP55199 621 aaPredicted RBP11.49□□□□□ -0.57
RTN3-211ENST00000542238 KLK9Q2XQG4 91 aa11.49□□□□□ -0.57
RTN3-211ENST00000542238 DEFB135Q30KP9 77 aa11.49□□□□□ -0.57
RTN3-211ENST00000542238 CDNFQ49AH0 187 aa11.49□□□□□ -0.57
RTN3-211ENST00000542238 UNQ9165/PRO28630Q6UXU0 137 aa11.49□□□□□ -0.57
RTN3-211ENST00000542238 SSX9Q7RTT3 188 aa11.49□□□□□ -0.57
RTN3-211ENST00000542238 MFSD4AQ8N468 514 aa11.49□□□□□ -0.57
RTN3-211ENST00000542238 TMEM217Q8N7C4 229 aa11.49□□□□□ -0.57
RTN3-211ENST00000542238 AIFM2Q9BRQ8 373 aa11.49□□□□□ -0.57
RTN3-211ENST00000542238 DCSTAMPQ9H295 470 aa11.49□□□□□ -0.57
RTN3-211ENST00000542238 KLK9Q9UKQ9 250 aa11.49□□□□□ -0.57
RTN3-211ENST00000542238 ELF5Q9UKW6 265 aaPredicted RBP11.49□□□□□ -0.57
RTN3-211ENST00000542238 IGLV11-55A0A075B6I3 123 aa11.48□□□□□ -0.57
RTN3-211ENST00000542238 IGKV1D-13A0A0B4J2D9 117 aa11.48□□□□□ -0.57
RTN3-211ENST00000542238 A0A1B0GW64 132 aa11.48□□□□□ -0.57
RTN3-211ENST00000542238 MFSD2BA6NFX1 497 aa11.48□□□□□ -0.57
RTN3-211ENST00000542238 REG1AP05451 166 aa11.48□□□□□ -0.57
RTN3-211ENST00000542238 IGKV1-13P0DP09 117 aa11.48□□□□□ -0.57
RTN3-211ENST00000542238 HLA-GP17693 338 aa11.48□□□□□ -0.57
RTN3-211ENST00000542238 ATF4P18848 351 aaPredicted RBP11.48□□□□□ -0.57
RTN3-211ENST00000542238 RAB3BP20337 219 aa11.48□□□□□ -0.57
RTN3-211ENST00000542238 EWSR1Q01844 656 aaKnown RBP eCLIP11.48□□□□□ -0.57
RTN3-211ENST00000542238 GPR107Q5VW38 600 aa11.48□□□□□ -0.57
RTN3-211ENST00000542238 HACD4Q5VWC8 232 aa11.48□□□□□ -0.57
RTN3-211ENST00000542238 CNIH2Q6PI25 160 aa11.48□□□□□ -0.57
RTN3-211ENST00000542238 PLET1Q6UQ28 207 aa11.48□□□□□ -0.57
RTN3-211ENST00000542238 ZNF66Q6ZN08 573 aa11.48□□□□□ -0.57
RTN3-211ENST00000542238 STPG3Q8N7X2 389 aa11.48□□□□□ -0.57
RTN3-211ENST00000542238 OR4A5Q8NH83 315 aa11.48□□□□□ -0.57
RTN3-211ENST00000542238 RAB2BQ8WUD1 216 aa11.48□□□□□ -0.57
RTN3-211ENST00000542238 SPAG8Q99932 426 aaPredicted RBP11.48□□□□□ -0.57
RTN3-211ENST00000542238 BCL7BQ9BQE9 202 aa11.48□□□□□ -0.57
RTN3-211ENST00000542238 C5orf66Q9H5L9 145 aa11.48□□□□□ -0.57
RTN3-211ENST00000542238 NDUFB11Q9NX14 153 aa11.48□□□□□ -0.57
RTN3-211ENST00000542238 TAS2R8Q9NYW2 309 aa11.48□□□□□ -0.57
RTN3-211ENST00000542238 THYN1Q9P016 225 aa11.48□□□□□ -0.57
RTN3-211ENST00000542238 GPR183P32249 361 aa11.47□□□□□ -0.57
RTN3-211ENST00000542238 HRASLSQ9HDD0 168 aa11.47□□□□□ -0.57
RTN3-211ENST00000542238 IGHV3-35A0A0C4DH35 117 aa11.46□□□□□ -0.57
RTN3-211ENST00000542238 KIR2DL5BA0A0G2JN68 375 aa11.46□□□□□ -0.57
RTN3-211ENST00000542238 KIR2DL5BA0A0G2JPC4 375 aa11.46□□□□□ -0.57
RTN3-211ENST00000542238 CYB5BO43169 146 aa11.46□□□□□ -0.57
RTN3-211ENST00000542238 BRWD1-AS2P59051 145 aa11.46□□□□□ -0.57
RTN3-211ENST00000542238 EIF4EBP1Q13541 118 aaPredicted RBP11.46□□□□□ -0.57
RTN3-211ENST00000542238 NEDD8Q15843 81 aa11.46□□□□□ -0.57
RTN3-211ENST00000542238 LAMTOR1Q6IAA8 161 aa11.46□□□□□ -0.57
RTN3-211ENST00000542238 KIR2DL5AQ8N109 375 aa11.46□□□□□ -0.57
RTN3-211ENST00000542238 RPP25LQ8N5L8 163 aaKnown RBP11.46□□□□□ -0.57
RTN3-211ENST00000542238 KIR2DL5BQ8NHK3 375 aa11.46□□□□□ -0.57
RTN3-211ENST00000542238 ZNF502Q8TBZ5 544 aa11.46□□□□□ -0.57
RTN3-211ENST00000542238 RNF183Q96D59 192 aa11.46□□□□□ -0.57
RTN3-211ENST00000542238 BET1LQ9NYM9 111 aa11.46□□□□□ -0.57
RTN3-211ENST00000542238 UBQLN2Q9UHD9 624 aa11.46□□□□□ -0.57
RTN3-211ENST00000542238 ANXA10Q9UJ72 324 aa11.46□□□□□ -0.57
RTN3-211ENST00000542238 hCG_2014768A0A024R1R8 64 aa11.45□□□□□ -0.58
RTN3-211ENST00000542238 TSPAN4O14817 238 aa11.45□□□□□ -0.58
RTN3-211ENST00000542238 PTBP1P26599 531 aaKnown RBP eCLIP11.45□□□□□ -0.585e-7■■■■□ 22.4
RTN3-211ENST00000542238 GNG2P59768 71 aa11.45□□□□□ -0.58
RTN3-211ENST00000542238 TIMM50Q3ZCQ8 353 aa11.45□□□□□ -0.58
RTN3-211ENST00000542238 LINC00299Q6ZSB3 139 aa11.45□□□□□ -0.58
RTN3-211ENST00000542238 NUDCD2Q8WVJ2 157 aa11.45□□□□□ -0.58
RTN3-211ENST00000542238 ZNF436Q9C0F3 470 aaPredicted RBP11.45□□□□□ -0.58
RTN3-211ENST00000542238 COMMD5Q9GZQ3 224 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms