RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 VCXQ9H320 206 aa11.47□□□□□ -0.57
CLSTN3-213ENST00000541953 CCL28Q9NRJ3 127 aa11.47□□□□□ -0.57
CLSTN3-213ENST00000541953 IGHV3OR16-8A0A075B7F1 116 aa11.46□□□□□ -0.57
CLSTN3-213ENST00000541953 TRDV1A0A1B0GX56 115 aa11.46□□□□□ -0.57
CLSTN3-213ENST00000541953 METTL21EPA6NDL7 271 aa11.46□□□□□ -0.57
CLSTN3-213ENST00000541953 PDCD5O14737 125 aa11.46□□□□□ -0.57
CLSTN3-213ENST00000541953 HLA-GP17693 338 aa11.46□□□□□ -0.57
CLSTN3-213ENST00000541953 RPL8P62917 257 aaKnown RBP11.46□□□□□ -0.57
CLSTN3-213ENST00000541953 FAM106AQ4KMX7 169 aa11.46□□□□□ -0.57
CLSTN3-213ENST00000541953 CNIH2Q6PI25 160 aa11.46□□□□□ -0.57
CLSTN3-213ENST00000541953 ZNF367Q7RTV3 350 aa11.46□□□□□ -0.57
CLSTN3-213ENST00000541953 OR10W1Q8NGF6 305 aa11.46□□□□□ -0.57
CLSTN3-213ENST00000541953 OR1L6Q8NGR2 347 aa11.46□□□□□ -0.57
CLSTN3-213ENST00000541953 HSD17B10Q99714 261 aaKnown RBP11.46□□□□□ -0.57
CLSTN3-213ENST00000541953 ANXA10Q9UJ72 324 aa11.46□□□□□ -0.57
CLSTN3-213ENST00000541953 FCER2P06734 321 aa11.45□□□□□ -0.58
CLSTN3-213ENST00000541953 RPA2P15927 270 aa11.45□□□□□ -0.58
CLSTN3-213ENST00000541953 MYL9P24844 172 aa11.45□□□□□ -0.58
CLSTN3-213ENST00000541953 MAS1LP35410 378 aa11.45□□□□□ -0.58
CLSTN3-213ENST00000541953 TNFRSF9Q07011 255 aa11.45□□□□□ -0.58
CLSTN3-213ENST00000541953 CEMP1Q6PRD7 247 aaPredicted RBP11.45□□□□□ -0.58
CLSTN3-213ENST00000541953 WFDC3Q8IUB2 231 aa11.45□□□□□ -0.58
CLSTN3-213ENST00000541953 GVQW1Q8N7I0 195 aa11.45□□□□□ -0.58
CLSTN3-213ENST00000541953 VSTM2AQ8TAG5 236 aa11.45□□□□□ -0.58
CLSTN3-213ENST00000541953 LGALS14Q8TCE9 139 aa11.45□□□□□ -0.58
CLSTN3-213ENST00000541953 IGHV3-21A0A0B4J1V1 117 aa11.44□□□□□ -0.58
CLSTN3-213ENST00000541953 NUPR2A6NF83 97 aa11.44□□□□□ -0.58
CLSTN3-213ENST00000541953 SPRY2O43597 315 aa11.44□□□□□ -0.58
CLSTN3-213ENST00000541953 MFAP2P55001 183 aa11.44□□□□□ -0.58
CLSTN3-213ENST00000541953 ZNF124Q15973 351 aa11.44□□□□□ -0.58
CLSTN3-213ENST00000541953 SECTM1Q8WVN6 248 aa11.44□□□□□ -0.58
CLSTN3-213ENST00000541953 TMEM190Q8WZ59 177 aa11.44□□□□□ -0.58
CLSTN3-213ENST00000541953 ZNF436Q9C0F3 470 aaPredicted RBP11.44□□□□□ -0.58
CLSTN3-213ENST00000541953 DCSTAMPQ9H295 470 aa11.44□□□□□ -0.58
CLSTN3-213ENST00000541953 BET1LQ9NYM9 111 aa11.44□□□□□ -0.58
CLSTN3-213ENST00000541953 DNAH17Q9UFH2 4485 aa11.44□□□□□ -0.58
CLSTN3-213ENST00000541953 PKHD1P08F94 4074 aa11.44□□□□□ -0.58
CLSTN3-213ENST00000541953 TRBV7-1A0A0A6YYK4 115 aa11.43□□□□□ -0.58
CLSTN3-213ENST00000541953 F8W735 103 aaPredicted RBP11.43□□□□□ -0.58
CLSTN3-213ENST00000541953 SULT1C2O00338 296 aa11.43□□□□□ -0.58
CLSTN3-213ENST00000541953 CTXN2P0C2S0 81 aa11.43□□□□□ -0.58
CLSTN3-213ENST00000541953 DEFA4P12838 97 aa11.43□□□□□ -0.58
CLSTN3-213ENST00000541953 RPL35AP18077 110 aaKnown RBP11.43□□□□□ -0.58
CLSTN3-213ENST00000541953 FCGR2BP31994 310 aaPredicted RBP11.43□□□□□ -0.58
CLSTN3-213ENST00000541953 GNG2P59768 71 aa11.43□□□□□ -0.58
CLSTN3-213ENST00000541953 ZNF66Q6ZN08 573 aa11.43□□□□□ -0.58
CLSTN3-213ENST00000541953 RBPMS2Q6ZRY4 209 aaKnown RBP11.43□□□□□ -0.58
CLSTN3-213ENST00000541953 SPAG16Q8N0X2 631 aa11.43□□□□□ -0.58
CLSTN3-213ENST00000541953 OR2C3Q8N628 320 aa11.43□□□□□ -0.58
CLSTN3-213ENST00000541953 OR13F1Q8NGS4 319 aa11.43□□□□□ -0.58
CLSTN3-213ENST00000541953 CHRDL1Q9BU40 450 aa11.43□□□□□ -0.58
CLSTN3-213ENST00000541953 HRASLSQ9HDD0 168 aa11.43□□□□□ -0.58
CLSTN3-213ENST00000541953 TRAV25A0A0B4J276 109 aa11.42□□□□□ -0.58
CLSTN3-213ENST00000541953 OR2T8A6NH00 312 aa11.42□□□□□ -0.58
CLSTN3-213ENST00000541953 UPK2O00526 184 aa11.42□□□□□ -0.58
CLSTN3-213ENST00000541953 TGOLN2O43493 480 aa11.42□□□□□ -0.58
CLSTN3-213ENST00000541953 ZNF207O43670 478 aaKnown RBP11.42□□□□□ -0.58
CLSTN3-213ENST00000541953 SLC22A5O76082 557 aa11.42□□□□□ -0.58
CLSTN3-213ENST00000541953 HRASP01112 189 aa11.42□□□□□ -0.58
CLSTN3-213ENST00000541953 HIST1H1BP16401 226 aaKnown RBP11.42□□□□□ -0.58
CLSTN3-213ENST00000541953 FCGR2CP31995 323 aa11.42□□□□□ -0.58
CLSTN3-213ENST00000541953 WT1-ASQ06250 92 aa11.42□□□□□ -0.58
CLSTN3-213ENST00000541953 Q6ZWC4 215 aa11.42□□□□□ -0.58
CLSTN3-213ENST00000541953 OR5H6Q8NGV6 325 aa11.42□□□□□ -0.58
CLSTN3-213ENST00000541953 RNF183Q96D59 192 aa11.42□□□□□ -0.58
CLSTN3-213ENST00000541953 SLC25A38Q96DW6 304 aa11.42□□□□□ -0.58
CLSTN3-213ENST00000541953 C5orf66Q9H5L9 145 aa11.42□□□□□ -0.58
CLSTN3-213ENST00000541953 TXNL4BQ9NX01 149 aaKnown RBP11.42□□□□□ -0.58
CLSTN3-213ENST00000541953 MRPL27Q9P0M9 148 aaKnown RBP11.42□□□□□ -0.58
CLSTN3-213ENST00000541953 DAPK2Q9UIK4 370 aa11.42□□□□□ -0.58
CLSTN3-213ENST00000541953 TP53TG1Q9Y2A0 90 aa11.42□□□□□ -0.58
CLSTN3-213ENST00000541953 NOTOA8MTQ0 251 aa11.41□□□□□ -0.58
CLSTN3-213ENST00000541953 DHFRP00374 187 aa11.41□□□□□ -0.58
CLSTN3-213ENST00000541953 CLEC2LP0C7M8 214 aa11.41□□□□□ -0.58
CLSTN3-213ENST00000541953 BMI1P35226 326 aa11.41□□□□□ -0.58
CLSTN3-213ENST00000541953 ADMP35318 185 aa11.41□□□□□ -0.58
CLSTN3-213ENST00000541953 POU2AF1Q16633 256 aa11.41□□□□□ -0.58
CLSTN3-213ENST00000541953 ANKRD55Q3KP44 614 aa11.41□□□□□ -0.58
CLSTN3-213ENST00000541953 PLET1Q6UQ28 207 aa11.41□□□□□ -0.58
CLSTN3-213ENST00000541953 MARC2Q969Z3 335 aa11.41□□□□□ -0.58
CLSTN3-213ENST00000541953 CXorf58Q96LI9 332 aa11.41□□□□□ -0.58
CLSTN3-213ENST00000541953 CNBD2Q96M20 576 aa11.41□□□□□ -0.58
CLSTN3-213ENST00000541953 SPAG8Q99932 426 aaPredicted RBP11.41□□□□□ -0.58
CLSTN3-213ENST00000541953 CENPOQ9BU64 300 aa11.41□□□□□ -0.58
CLSTN3-213ENST00000541953 RNF167Q9H6Y7 350 aa11.41□□□□□ -0.58
CLSTN3-213ENST00000541953 TMEM140Q9NV12 185 aa11.41□□□□□ -0.58
CLSTN3-213ENST00000541953 DYNC1H1Q14204 4646 aaKnown RBP11.41□□□□□ -0.58
CLSTN3-213ENST00000541953 TSPAN4O14817 238 aa11.4□□□□□ -0.58
CLSTN3-213ENST00000541953 PPYP01298 95 aa11.4□□□□□ -0.58
CLSTN3-213ENST00000541953 GALP22466 123 aa11.4□□□□□ -0.58
CLSTN3-213ENST00000541953 PTBP1P26599 531 aaKnown RBP eCLIP11.4□□□□□ -0.584e-6■■□□□ 11.8
CLSTN3-213ENST00000541953 RANBP1P43487 201 aa11.4□□□□□ -0.58
CLSTN3-213ENST00000541953 APOC4P55056 127 aa11.4□□□□□ -0.58
CLSTN3-213ENST00000541953 ELLP55199 621 aaPredicted RBP11.4□□□□□ -0.58
CLSTN3-213ENST00000541953 ARL6IP1Q15041 203 aa11.4□□□□□ -0.58
CLSTN3-213ENST00000541953 SFXN4Q6P4A7 337 aa11.4□□□□□ -0.58
CLSTN3-213ENST00000541953 ZNF818PQ6ZRF7 136 aa11.4□□□□□ -0.58
CLSTN3-213ENST00000541953 APRG1Q8IVJ8 170 aa11.4□□□□□ -0.58
CLSTN3-213ENST00000541953 BEST4Q8NFU0 473 aa11.4□□□□□ -0.58
CLSTN3-213ENST00000541953 RHBDL2Q9NX52 303 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms