RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 ZGRF1Q86YA3 2104 aa10.34□□□□□ -0.75
RNF4-222ENST00000541204 TLN1Q9Y490 2541 aaKnown RBP10.33□□□□□ -0.76
RNF4-222ENST00000541204 RRHO14718 337 aa10.33□□□□□ -0.76
RNF4-222ENST00000541204 TMPRSS2O15393 492 aa10.33□□□□□ -0.76
RNF4-222ENST00000541204 RBFOX2O43251 390 aaKnown RBP eCLIP10.33□□□□□ -0.76
RNF4-222ENST00000541204 ARL14EPLP0DKL9 152 aa10.33□□□□□ -0.76
RNF4-222ENST00000541204 HNF1AP20823 631 aa10.33□□□□□ -0.76
RNF4-222ENST00000541204 DUTP33316 252 aaKnown RBP10.33□□□□□ -0.76
RNF4-222ENST00000541204 PRAMEF5Q5TYX0 476 aa10.33□□□□□ -0.76
RNF4-222ENST00000541204 DUX4L9Q6RFH8 374 aaPredicted RBP10.33□□□□□ -0.76
RNF4-222ENST00000541204 PRR7Q8TB68 274 aa10.33□□□□□ -0.76
RNF4-222ENST00000541204 LEAP2Q969E1 77 aa10.33□□□□□ -0.76
RNF4-222ENST00000541204 KCNIP2Q9NS61 270 aa10.33□□□□□ -0.76
RNF4-222ENST00000541204 GNG12Q9UBI6 72 aa10.33□□□□□ -0.76
RNF4-222ENST00000541204 SPTA1P02549 2419 aa10.33□□□□□ -0.76
RNF4-222ENST00000541204 HCFC1P51610 2035 aa10.33□□□□□ -0.76
RNF4-222ENST00000541204 TRBV20OR9-2A0A075B6H5 130 aa10.33□□□□□ -0.76
RNF4-222ENST00000541204 C15orf65H3BRN8 121 aa10.33□□□□□ -0.76
RNF4-222ENST00000541204 SPINT2O43291 252 aa10.33□□□□□ -0.76
RNF4-222ENST00000541204 GPR12P47775 334 aa10.33□□□□□ -0.76
RNF4-222ENST00000541204 TREML4Q6UXN2 200 aa10.33□□□□□ -0.76
RNF4-222ENST00000541204 TMEM144Q7Z5S9 345 aa10.33□□□□□ -0.76
RNF4-222ENST00000541204 GBGT1Q8N5D6 347 aa10.33□□□□□ -0.76
RNF4-222ENST00000541204 FAM57AQ8TBR7 257 aa10.33□□□□□ -0.76
RNF4-222ENST00000541204 Q8TCH9 128 aa10.33□□□□□ -0.76
RNF4-222ENST00000541204 RAB1CQ92928 201 aa10.33□□□□□ -0.76
RNF4-222ENST00000541204 NDUFAF3Q9BU61 184 aa10.33□□□□□ -0.76
RNF4-222ENST00000541204 PAX5Q02548 391 aa10.32□□□□□ -0.76
RNF4-222ENST00000541204 PRR30Q53SZ7 412 aaPredicted RBP10.32□□□□□ -0.76
RNF4-222ENST00000541204 UTF1Q5T230 341 aa10.32□□□□□ -0.76
RNF4-222ENST00000541204 TCF23Q7RTU1 214 aa10.32□□□□□ -0.76
RNF4-222ENST00000541204 ZCCHC24Q8N2G6 241 aaKnown RBP10.32□□□□□ -0.76
RNF4-222ENST00000541204 TMEM256Q8N2U0 113 aa10.32□□□□□ -0.76
RNF4-222ENST00000541204 OR4A16Q8NH70 328 aa10.32□□□□□ -0.76
RNF4-222ENST00000541204 SGMS2Q8NHU3 365 aa10.32□□□□□ -0.76
RNF4-222ENST00000541204 SFRP2Q96HF1 295 aa10.32□□□□□ -0.76
RNF4-222ENST00000541204 HEYLQ9NQ87 328 aaPredicted RBP10.32□□□□□ -0.76
RNF4-222ENST00000541204 TRAV3A0A0B4J244 114 aa10.32□□□□□ -0.76
RNF4-222ENST00000541204 CD99P14209 185 aa10.32□□□□□ -0.76
RNF4-222ENST00000541204 COL8A2P25067 703 aa10.32□□□□□ -0.76
RNF4-222ENST00000541204 TIMP3P35625 211 aa10.32□□□□□ -0.76
RNF4-222ENST00000541204 MIC13Q5XKP0 118 aa10.32□□□□□ -0.76
RNF4-222ENST00000541204 ABHD12Q8N2K0 398 aa10.32□□□□□ -0.76
RNF4-222ENST00000541204 MGST2Q99735 147 aa10.32□□□□□ -0.76
RNF4-222ENST00000541204 C2orf88Q9BSF0 95 aa10.32□□□□□ -0.76
RNF4-222ENST00000541204 MS4A5Q9H3V2 200 aa10.32□□□□□ -0.76
RNF4-222ENST00000541204 TUBG2Q9NRH3 451 aa10.32□□□□□ -0.76
RNF4-222ENST00000541204 SCO2A0A1W2PP80 73 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 A8MXE2 369 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 SRRM5B3KS81 715 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 NUPR1O60356 82 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 GLRXP35754 106 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 PDLIM3Q53GG5 364 aaPredicted RBP10.31□□□□□ -0.76
RNF4-222ENST00000541204 RPL39P5Q59GN2 51 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 DOLPP1Q86YN1 238 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 WFDC8Q8IUA0 241 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 PXMP4Q9Y6I8 212 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 IGF2RP11717 2491 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 A0A0G2JNJ9 132 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 F6UZH7 168 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 M0R1X1 148 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 SOX15O60248 233 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 HPRT1P00492 218 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 CCKARP32238 428 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 OPRK1P41145 380 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 SPCS3P61009 180 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 HTD2P86397 168 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 SSMEM1Q8WWF3 244 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 SFXN3Q9BWM7 321 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 DCAF16Q9NXF7 216 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 Q9UFV3 132 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 PKDREJQ9NTG1 2253 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 SCGB1D1O95968 90 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 ADH4P08319 380 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 MZT1Q08AG7 82 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 FOXL1Q12952 345 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 IQCJQ1A5X6 159 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 SCNM1Q9BWG6 230 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 GGTLC1Q9BX51 225 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 ELOVL5Q9NYP7 299 aa10.31□□□□□ -0.76
RNF4-222ENST00000541204 TET2Q6N021 2002 aaPredicted RBP10.3□□□□□ -0.76
RNF4-222ENST00000541204 ZZEF1O43149 2961 aa10.3□□□□□ -0.76
RNF4-222ENST00000541204 MDFIC2A0A1B0GVS7 189 aa10.3□□□□□ -0.76
RNF4-222ENST00000541204 PRRG2O14669 202 aa10.3□□□□□ -0.76
RNF4-222ENST00000541204 MPDU1O75352 247 aa10.3□□□□□ -0.76
RNF4-222ENST00000541204 STAG3L2P0CL84 134 aa10.3□□□□□ -0.76
RNF4-222ENST00000541204 STAG3L3P0CL85 134 aa10.3□□□□□ -0.76
RNF4-222ENST00000541204 CEACAM8P31997 349 aaPredicted RBP10.3□□□□□ -0.76
RNF4-222ENST00000541204 VDAC2P45880 294 aaPredicted RBP10.3□□□□□ -0.76
RNF4-222ENST00000541204 THBS3P49746 956 aa10.3□□□□□ -0.76
RNF4-222ENST00000541204 TMEM249Q2WGJ8 235 aa10.3□□□□□ -0.76
RNF4-222ENST00000541204 MORN2Q502X0 79 aa10.3□□□□□ -0.76
RNF4-222ENST00000541204 KRTCAP3Q53RY4 240 aa10.3□□□□□ -0.76
RNF4-222ENST00000541204 TEX38Q6PEX7 206 aa10.3□□□□□ -0.76
RNF4-222ENST00000541204 FAM169BQ8N8A8 192 aa10.3□□□□□ -0.76
RNF4-222ENST00000541204 PRSS46E5RG02 174 aa10.3□□□□□ -0.76
RNF4-222ENST00000541204 GFRA3O60609 400 aa10.3□□□□□ -0.76
RNF4-222ENST00000541204 CD40P25942 277 aa10.3□□□□□ -0.76
RNF4-222ENST00000541204 ADMP35318 185 aa10.3□□□□□ -0.76
RNF4-222ENST00000541204 ZNF134P52741 427 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms