RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 MAS1LP35410 378 aa11.84□□□□□ -0.51
USP3-204ENST00000540797 CA7P43166 264 aa11.84□□□□□ -0.51
USP3-204ENST00000540797 TMEM97Q5BJF2 176 aa11.84□□□□□ -0.51
USP3-204ENST00000540797 Q6ZN92 141 aa11.84□□□□□ -0.51
USP3-204ENST00000540797 SNURFLB1AK76 121 aa11.83□□□□□ -0.51
USP3-204ENST00000540797 ACAA1P09110 424 aaPredicted RBP11.83□□□□□ -0.51
USP3-204ENST00000540797 MBNL2Q5VZF2 373 aaKnown RBP11.83□□□□□ -0.51
USP3-204ENST00000540797 CYB561D1Q8N8Q1 229 aa11.83□□□□□ -0.51
USP3-204ENST00000540797 APCSP02743 223 aa11.83□□□□□ -0.52
USP3-204ENST00000540797 DLX6P56179 175 aa11.83□□□□□ -0.52
USP3-204ENST00000540797 RND3P61587 244 aa11.83□□□□□ -0.52
USP3-204ENST00000540797 OR10D4PQ8NGN7 298 aa11.83□□□□□ -0.52
USP3-204ENST00000540797 A0A1W2PRX2 142 aa11.83□□□□□ -0.52
USP3-204ENST00000540797 SIAH2O43255 324 aa11.83□□□□□ -0.52
USP3-204ENST00000540797 GPX1P07203 203 aa11.83□□□□□ -0.52
USP3-204ENST00000540797 ARL14EPLP0DKL9 152 aa11.83□□□□□ -0.52
USP3-204ENST00000540797 MEF2BQ02080 365 aaPredicted RBP11.83□□□□□ -0.52
USP3-204ENST00000540797 NABP1Q96AH0 204 aa11.83□□□□□ -0.52
USP3-204ENST00000540797 H2BFSP57053 126 aa11.83□□□□□ -0.52
USP3-204ENST00000540797 IFI27L2Q9H2X8 130 aa11.83□□□□□ -0.52
USP3-204ENST00000540797 SMDT1Q9H4I9 107 aa11.83□□□□□ -0.52
USP3-204ENST00000540797 PRR32B1ATL7 298 aa11.83□□□□□ -0.52
USP3-204ENST00000540797 YPEL1O60688 119 aa11.83□□□□□ -0.52
USP3-204ENST00000540797 RNF224P0DH78 156 aa11.83□□□□□ -0.52
USP3-204ENST00000540797 IQCJQ1A5X6 159 aa11.83□□□□□ -0.52
USP3-204ENST00000540797 YPEL2Q96QA6 119 aa11.83□□□□□ -0.52
USP3-204ENST00000540797 SLC25A33Q9BSK2 321 aa11.83□□□□□ -0.52
USP3-204ENST00000540797 C21orf62Q9NYP8 219 aa11.83□□□□□ -0.52
USP3-204ENST00000540797 COL6A6A6NMZ7 2263 aa11.82□□□□□ -0.52
USP3-204ENST00000540797 SAA2-SAA4A0A096LPE2 208 aa11.82□□□□□ -0.52
USP3-204ENST00000540797 IGHV3-49A0A0A0MS15 119 aa11.82□□□□□ -0.52
USP3-204ENST00000540797 SAA2P0DJI9 122 aaPredicted RBP11.82□□□□□ -0.52
USP3-204ENST00000540797 MFAP2P55001 183 aa11.82□□□□□ -0.52
USP3-204ENST00000540797 KLHDC3Q9BQ90 382 aa11.82□□□□□ -0.52
USP3-204ENST00000540797 MRPL32Q9BYC8 188 aaKnown RBP11.82□□□□□ -0.52
USP3-204ENST00000540797 FOXA2Q9Y261 457 aaPredicted RBP11.82□□□□□ -0.52
USP3-204ENST00000540797 NBR2O15453 112 aa11.82□□□□□ -0.52
USP3-204ENST00000540797 GLRX5Q86SX6 157 aa11.82□□□□□ -0.52
USP3-204ENST00000540797 PRSS22Q9GZN4 317 aa11.82□□□□□ -0.52
USP3-204ENST00000540797 TUBA4BQ9H853 241 aa11.82□□□□□ -0.52
USP3-204ENST00000540797 ZNF207O43670 478 aaKnown RBP11.82□□□□□ -0.52
USP3-204ENST00000540797 CYP2G1PQ6ZSU1 146 aa11.82□□□□□ -0.52
USP3-204ENST00000540797 PAQR4Q8N4S7 273 aaPredicted RBP11.82□□□□□ -0.52
USP3-204ENST00000540797 TCF20Q9UGU0 1960 aaKnown RBP11.82□□□□□ -0.52
USP3-204ENST00000540797 UCP1P25874 307 aa11.82□□□□□ -0.52
USP3-204ENST00000540797 GPR183P32249 361 aa11.82□□□□□ -0.52
USP3-204ENST00000540797 NBL1P41271 181 aa11.82□□□□□ -0.52
USP3-204ENST00000540797 SMAGPQ0VAQ4 97 aa11.82□□□□□ -0.52
USP3-204ENST00000540797 SIGIRRQ6IA17 410 aa11.82□□□□□ -0.52
USP3-204ENST00000540797 ZNF497Q6ZNH5 498 aa11.82□□□□□ -0.52
USP3-204ENST00000540797 GATAD1Q8WUU5 269 aa11.82□□□□□ -0.52
USP3-204ENST00000540797 LY6G6EA0A0G2JKS1 128 aa11.81□□□□□ -0.52
USP3-204ENST00000540797 MSGN1A6NI15 193 aa11.81□□□□□ -0.52
USP3-204ENST00000540797 M0QZK8 103 aa11.81□□□□□ -0.52
USP3-204ENST00000540797 IGKV3-20P01619 116 aa11.81□□□□□ -0.52
USP3-204ENST00000540797 CX3CL1P78423 397 aa11.81□□□□□ -0.52
USP3-204ENST00000540797 IBA57Q5T440 356 aaKnown RBP11.81□□□□□ -0.52
USP3-204ENST00000540797 U3KQA8 63 aa11.81□□□□□ -0.52
USP3-204ENST00000540797 MDC1Q14676 2089 aaKnown RBP11.81□□□□□ -0.52
USP3-204ENST00000540797 A0A087WV48 116 aa11.81□□□□□ -0.52
USP3-204ENST00000540797 TRBV6-7A0A0A0MS04 114 aa11.81□□□□□ -0.52
USP3-204ENST00000540797 SGMS2Q8NHU3 365 aa11.81□□□□□ -0.52
USP3-204ENST00000540797 FUT9Q9Y231 359 aa11.81□□□□□ -0.52
USP3-204ENST00000540797 PLXNA3P51805 1871 aa11.81□□□□□ -0.52
USP3-204ENST00000540797 TRAV24A0A0B4J272 114 aa11.81□□□□□ -0.52
USP3-204ENST00000540797 SIGLEC5O15389 551 aa11.81□□□□□ -0.52
USP3-204ENST00000540797 VDAC2P45880 294 aaPredicted RBP11.81□□□□□ -0.52
USP3-204ENST00000540797 B3GALT5-AS1P59052 145 aa11.81□□□□□ -0.52
USP3-204ENST00000540797 SNRPEP62304 92 aaKnown RBP11.81□□□□□ -0.52
USP3-204ENST00000540797 HIST1H1AQ02539 215 aaPredicted RBP11.81□□□□□ -0.52
USP3-204ENST00000540797 DHRS11Q6UWP2 260 aa11.81□□□□□ -0.52
USP3-204ENST00000540797 PRSS33Q8NF86 280 aa11.81□□□□□ -0.52
USP3-204ENST00000540797 TRAV40A0A0B4J280 105 aa11.81□□□□□ -0.52
USP3-204ENST00000540797 PI4KAP42356 2102 aa11.81□□□□□ -0.52
USP3-204ENST00000540797 HNRNPA3P51991 378 aaKnown RBP11.81□□□□□ -0.52
USP3-204ENST00000540797 HERVK_113P61574 105 aa11.81□□□□□ -0.52
USP3-204ENST00000540797 LINC00305Q7Z4B0 112 aa11.81□□□□□ -0.52
USP3-204ENST00000540797 IGHV3-66A0A0C4DH42 116 aa11.8□□□□□ -0.52
USP3-204ENST00000540797 FAM181BA6NEQ2 426 aa11.8□□□□□ -0.52
USP3-204ENST00000540797 EIF3GO75821 320 aaKnown RBP eCLIP11.8□□□□□ -0.52
USP3-204ENST00000540797 MORN2Q502X0 79 aa11.8□□□□□ -0.52
USP3-204ENST00000540797 CLEC19AQ6UXS0 136 aa11.8□□□□□ -0.52
USP3-204ENST00000540797 MYOZ3Q8TDC0 251 aa11.8□□□□□ -0.52
USP3-204ENST00000540797 PHLDA3Q9Y5J5 127 aa11.8□□□□□ -0.52
USP3-204ENST00000540797 IGHV3-11P01762 117 aa11.8□□□□□ -0.52
USP3-204ENST00000540797 CD24P25063 80 aa11.8□□□□□ -0.52
USP3-204ENST00000540797 CCKARP32238 428 aa11.8□□□□□ -0.52
USP3-204ENST00000540797 GALNT14Q96FL9 552 aa11.8□□□□□ -0.52
USP3-204ENST00000540797 CBLN2Q8IUK8 224 aa11.8□□□□□ -0.52
USP3-204ENST00000540797 SAA1P0DJI8 122 aaPredicted RBP11.8□□□□□ -0.52
USP3-204ENST00000540797 SCGB1C2P0DMR2 95 aa11.8□□□□□ -0.52
USP3-204ENST00000540797 WNT10AQ9GZT5 417 aa11.8□□□□□ -0.52
USP3-204ENST00000540797 SH3BGRL3Q9H299 93 aa11.8□□□□□ -0.52
USP3-204ENST00000540797 AMY1AP04745 511 aa11.79□□□□□ -0.52
USP3-204ENST00000540797 ANOS1P23352 680 aa11.79□□□□□ -0.52
USP3-204ENST00000540797 ZNF660Q6AZW8 331 aaPredicted RBP11.79□□□□□ -0.52
USP3-204ENST00000540797 MAP1LC3CQ9BXW4 147 aa11.79□□□□□ -0.52
USP3-204ENST00000540797 HSPB1P04792 205 aaKnown RBP11.79□□□□□ -0.52
USP3-204ENST00000540797 IL6RP08887 468 aaPredicted RBP11.79□□□□□ -0.52
USP3-204ENST00000540797 NUTF2P61970 127 aaKnown RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms