RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 KCNK17Q96T54 332 aa7.94□□□□□ -1.14
CTNNA1-243ENST00000540387 PPP1R3CQ9UQK1 317 aa7.94□□□□□ -1.14
CTNNA1-243ENST00000540387 C9orf118A6NHY6 69 aa7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 K7EN84 100 aa7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 M0R2Z0 102 aa7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 IL11P20809 199 aa7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 CRYBB3P26998 211 aa7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 CD300EQ496F6 205 aaPredicted RBP7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 SPANXN5Q5MJ07 72 aa7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 C9orf135Q5VTT2 229 aa7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 NFAM1Q8NET5 270 aaPredicted RBP7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 OR2K2Q8NGT1 345 aa7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 NAA38Q9BRA0 125 aaKnown RBP7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 GEMIN7Q9H840 131 aaKnown RBP7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 TSSC4Q9Y5U2 329 aaPredicted RBP7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 NPIPA5E9PKD4 350 aa7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 H3BUT2 72 aa7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 F2RL2O00254 374 aa7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 HSBP1O75506 76 aa7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 COX5AP20674 150 aa7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 PTGDSP41222 190 aa7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 FOLR3P41439 243 aa7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 MEF2CQ06413 473 aaPredicted RBP7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 MRPL54Q6P161 138 aaKnown RBP7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 OR1F12Q8NHA8 337 aa7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 C18orf32Q8TCD1 76 aa7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 RDH5Q92781 318 aa7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 SPACA9Q96E40 222 aaPredicted RBP7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 PERPQ96FX8 193 aa7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 NXF5Q9H1B4 397 aaKnown RBP7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 MED29Q9NX70 200 aa7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 JKAMPQ9P055 326 aa7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 COPS7AQ9UBW8 275 aa7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 C19orf25Q9UFG5 118 aaPredicted RBP7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 NPIPA1Q9UND3 350 aa7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 SPTBN4Q9H254 2564 aa7.93□□□□□ -1.14
CTNNA1-243ENST00000540387 RTTNQ86VV8 2226 aa7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 B9A039 149 aa7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 UTS2O95399 124 aa7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 NUDT14O95848 222 aa7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 HLA-DRB1P01911 266 aa7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 IL12BP29460 328 aa7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 GPR183P32249 361 aa7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 RAB31Q13636 194 aa7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 CEACAM21Q3KPI0 293 aa7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 C16orf47Q6ZP98 133 aaPredicted RBP7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 LYZL4Q96KX0 146 aa7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 LOC102723996A0A087X1L8 192 aa7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 IGKV1D-13A0A0B4J2D9 117 aa7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 SCO2A0A1W2PP80 73 aa7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 PSMB11A5LHX3 300 aa7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 H0Y980 276 aa7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 IGKV1-13P0DP09 117 aa7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 SEC11AP67812 179 aa7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 SLC35B1P78383 322 aa7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 CX3CL1P78423 397 aa7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 PCOLCEQ15113 449 aa7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 MRAP2Q96G30 205 aa7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 TMEM70Q9BUB7 260 aa7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 SCRT2Q9NQ03 307 aa7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 CACNG5Q9UF02 275 aa7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 ZNF835Q9Y2P0 537 aa7.92□□□□□ -1.14
CTNNA1-243ENST00000540387 IGHV1-45A0A0A0MS14 117 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 TMED7-TICAM2A0A0A6YYA0 188 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 MS4A18H0YCH9 400 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 SPRY1O43609 319 aaPredicted RBP7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 CELA2AP08217 269 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 SLC25A6P12236 298 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 SPINK2P20155 84 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 GPM6AP51674 278 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 MS4A18Q3C1V0 323 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 DTX1Q86Y01 620 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 PRR22Q8IZ63 422 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 OR5A1Q8NGJ0 315 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 OR10AG1Q8NH19 301 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 BLNKQ8WV28 456 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 FER1L6-AS2Q96M78 137 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 TMEM204Q9BSN7 226 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 CCL28Q9NRJ3 127 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 V9GYV3 84 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 LIPT2A6NK58 231 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 H3BRM9 83 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 TSPAN13O95857 204 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 PF4V1P10720 104 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 COX6A1P12074 109 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 UQCRFS1P47985 274 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 FOXE3Q13461 319 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 PIGYQ3MUY2 71 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 HLA-DQA1Q5Y7H0 255 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 PPP1R32Q7Z5V6 425 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 IMMP1LQ96LU5 166 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 EMC6Q9BV81 110 aa7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 PNRC2Q9NPJ4 139 aaKnown RBP7.91□□□□□ -1.14
CTNNA1-243ENST00000540387 AKAP13Q12802 2813 aa7.9□□□□□ -1.14
CTNNA1-243ENST00000540387 C21orf140B9A014 251 aa7.9□□□□□ -1.14
CTNNA1-243ENST00000540387 RER1O15258 196 aa7.9□□□□□ -1.14
CTNNA1-243ENST00000540387 HLA-DQA1P01909 254 aa7.9□□□□□ -1.14
CTNNA1-243ENST00000540387 GP1BBP13224 206 aa7.9□□□□□ -1.14
CTNNA1-243ENST00000540387 USF1P22415 310 aaPredicted RBP7.9□□□□□ -1.14
CTNNA1-243ENST00000540387 HTR1DP28221 377 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms