RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 MEOX2P50222 304 aa8.9□□□□□ -0.99
CLIP1-213ENST00000540338 TNXAQ16473 311 aa8.9□□□□□ -0.99
CLIP1-213ENST00000540338 MISP3Q96FF7 219 aa8.9□□□□□ -0.99
CLIP1-213ENST00000540338 PARLQ9H300 379 aa8.9□□□□□ -0.99
CLIP1-213ENST00000540338 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.89□□□□□ -0.99
CLIP1-213ENST00000540338 ZNF320A2RRD8 509 aa8.89□□□□□ -0.99
CLIP1-213ENST00000540338 K7ENP7 123 aa8.89□□□□□ -0.99
CLIP1-213ENST00000540338 RRHO14718 337 aa8.89□□□□□ -0.99
CLIP1-213ENST00000540338 MGST1P10620 155 aaKnown RBP8.89□□□□□ -0.99
CLIP1-213ENST00000540338 GAR1Q9NY12 217 aaKnown RBP8.89□□□□□ -0.99
CLIP1-213ENST00000540338 KIAA1324LA8MWY0 1029 aaPredicted RBP8.89□□□□□ -0.99
CLIP1-213ENST00000540338 UPK2O00526 184 aa8.89□□□□□ -0.99
CLIP1-213ENST00000540338 RELBQ01201 579 aa8.89□□□□□ -0.99
CLIP1-213ENST00000540338 ZNF90Q03938 601 aa8.89□□□□□ -0.99
CLIP1-213ENST00000540338 HAPLN4Q86UW8 402 aa8.89□□□□□ -0.99
CLIP1-213ENST00000540338 OR2T10Q8NGZ9 312 aa8.89□□□□□ -0.99
CLIP1-213ENST00000540338 Q8TCH9 128 aa8.89□□□□□ -0.99
CLIP1-213ENST00000540338 RNF2Q99496 336 aa8.89□□□□□ -0.99
CLIP1-213ENST00000540338 AGMATQ9BSE5 352 aa8.89□□□□□ -0.99
CLIP1-213ENST00000540338 MRPL20Q9BYC9 149 aaKnown RBP8.89□□□□□ -0.99
CLIP1-213ENST00000540338 TOLLIPQ9H0E2 274 aa8.89□□□□□ -0.99
CLIP1-213ENST00000540338 RALYQ9UKM9 306 aaKnown RBP8.89□□□□□ -0.99
CLIP1-213ENST00000540338 TRAV3A0A0B4J244 114 aa8.89□□□□□ -0.99
CLIP1-213ENST00000540338 TMEM178BH3BS89 294 aa8.89□□□□□ -0.99
CLIP1-213ENST00000540338 NDUFB4O95168 129 aa8.89□□□□□ -0.99
CLIP1-213ENST00000540338 C16orf82Q7Z2V1 217 aa8.89□□□□□ -0.99
CLIP1-213ENST00000540338 PLCE1Q9P212 2302 aa8.89□□□□□ -0.99
CLIP1-213ENST00000540338 IGHV3-72A0A0B4J1Y9 119 aa8.89□□□□□ -0.99
CLIP1-213ENST00000540338 C15orf62A8K5M9 175 aa8.89□□□□□ -0.99
CLIP1-213ENST00000540338 ARL14EPLP0DKL9 152 aa8.89□□□□□ -0.99
CLIP1-213ENST00000540338 ZNF343Q6P1L6 599 aa8.89□□□□□ -0.99
CLIP1-213ENST00000540338 HEPN1Q6WQI6 88 aa8.89□□□□□ -0.99
CLIP1-213ENST00000540338 OR1L4Q8NGR5 311 aa8.89□□□□□ -0.99
CLIP1-213ENST00000540338 SDF2L1Q9HCN8 221 aa8.89□□□□□ -0.99
CLIP1-213ENST00000540338 DNAH14Q0VDD8 3507 aa8.89□□□□□ -0.99
CLIP1-213ENST00000540338 TGIF2-C20orf24A0A0A6YYL0 155 aa8.88□□□□□ -0.99
CLIP1-213ENST00000540338 ZNF98A6NK75 572 aa8.88□□□□□ -0.99
CLIP1-213ENST00000540338 MSMPQ1L6U9 139 aa8.88□□□□□ -0.99
CLIP1-213ENST00000540338 NCMAPQ5T1S8 102 aa8.88□□□□□ -0.99
CLIP1-213ENST00000540338 CYP2G1PQ6ZSU1 146 aa8.88□□□□□ -0.99
CLIP1-213ENST00000540338 STPG3Q8N7X2 389 aa8.88□□□□□ -0.99
CLIP1-213ENST00000540338 ZNF383Q8NA42 475 aa8.88□□□□□ -0.99
CLIP1-213ENST00000540338 DLL1O00548 723 aa8.88□□□□□ -0.99
CLIP1-213ENST00000540338 SLC25A17O43808 307 aa8.88□□□□□ -0.99
CLIP1-213ENST00000540338 IL6RP08887 468 aaPredicted RBP8.88□□□□□ -0.99
CLIP1-213ENST00000540338 CT45A6P0DMU7 189 aa8.88□□□□□ -0.99
CLIP1-213ENST00000540338 CT45A5P0DMU8 189 aa8.88□□□□□ -0.99
CLIP1-213ENST00000540338 CT45A7P0DMV0 189 aa8.88□□□□□ -0.99
CLIP1-213ENST00000540338 C17orf58Q2M2W7 97 aa8.88□□□□□ -0.99
CLIP1-213ENST00000540338 DOK5Q9P104 306 aa8.88□□□□□ -0.99
CLIP1-213ENST00000540338 POLEQ07864 2286 aa8.88□□□□□ -0.99
CLIP1-213ENST00000540338 LHBP01229 141 aa8.88□□□□□ -0.99
CLIP1-213ENST00000540338 FABP1P07148 127 aa8.88□□□□□ -0.99
CLIP1-213ENST00000540338 PRR30Q53SZ7 412 aaPredicted RBP8.88□□□□□ -0.99
CLIP1-213ENST00000540338 SPRNQ5BIV9 151 aa8.88□□□□□ -0.99
CLIP1-213ENST00000540338 TMEM204Q9BSN7 226 aa8.88□□□□□ -0.99
CLIP1-213ENST00000540338 RAXQ9Y2V3 346 aa8.88□□□□□ -0.99
CLIP1-213ENST00000540338 USF3Q68DE3 2245 aa8.88□□□□□ -0.99
CLIP1-213ENST00000540338 CEACAM3P40198 252 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 LGALS7P47929 136 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 ZNF134P52741 427 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 S100A7AQ86SG5 101 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 PDPNQ86YL7 162 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 LINC00518Q8N0U6 118 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 ZNF596Q8TC21 504 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 AURKAIP1Q9NWT8 199 aaPredicted RBP8.87□□□□□ -0.99
CLIP1-213ENST00000540338 DCAF16Q9NXF7 216 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 RPH3ALQ9UNE2 315 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 FOXA2Q9Y261 457 aaPredicted RBP8.87□□□□□ -0.99
CLIP1-213ENST00000540338 TRBV23-1A0A0A0MS06 115 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 SAA1P0DJI8 122 aaPredicted RBP8.87□□□□□ -0.99
CLIP1-213ENST00000540338 FOLR2P14207 255 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 LOXL3P58215 753 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 TMEM200BQ69YZ2 307 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 DUX4L9Q6RFH8 374 aaPredicted RBP8.87□□□□□ -0.99
CLIP1-213ENST00000540338 TREML4Q6UXN2 200 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 DOCK11Q5JSL3 2073 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 PPIAL4CA0A0B4J2A2 164 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 TRGC2P03986 189 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 PPIAL4GP0DN37 164 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 ERVFC1-1P60608 527 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 SLC25A48Q6ZT89 311 aaKnown RBP8.87□□□□□ -0.99
CLIP1-213ENST00000540338 MMD2Q8IY49 270 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 TMEM37Q8WXS4 190 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 ZNF318Q5VUA4 2279 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 PAX6P26367 422 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 RPL27AP46776 148 aaKnown RBP8.87□□□□□ -0.99
CLIP1-213ENST00000540338 GNG4P50150 75 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 ERVFRD-1P60508 538 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 UBE2L3P68036 154 aaKnown RBP8.87□□□□□ -0.99
CLIP1-213ENST00000540338 SPNS3Q6ZMD2 512 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 SSX3Q99909 188 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 MSRB2Q9Y3D2 182 aa8.87□□□□□ -0.99
CLIP1-213ENST00000540338 SEC14L6B5MCN3 397 aa8.86□□□□□ -0.99
CLIP1-213ENST00000540338 PRCDQ00LT1 54 aa8.86□□□□□ -0.99
CLIP1-213ENST00000540338 PAX5Q02548 391 aa8.86□□□□□ -0.99
CLIP1-213ENST00000540338 OR10G8Q8NGN5 311 aa8.86□□□□□ -0.99
CLIP1-213ENST00000540338 NABP2Q9BQ15 211 aa8.86□□□□□ -0.99
CLIP1-213ENST00000540338 ATXN7O15265 892 aaPredicted RBP8.86□□□□□ -0.99
CLIP1-213ENST00000540338 IGFBP2P18065 325 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms