RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 TCF19Q9Y242 345 aa10.85□□□□□ -0.67
MSH6-210ENST00000540021 M0R1B8 84 aa10.85□□□□□ -0.67
MSH6-210ENST00000540021 APCSP02743 223 aa10.85□□□□□ -0.67
MSH6-210ENST00000540021 TIMP3P35625 211 aa10.85□□□□□ -0.67
MSH6-210ENST00000540021 PSG7Q13046 419 aa10.85□□□□□ -0.67
MSH6-210ENST00000540021 TRA2AQ13595 282 aaKnown RBP eCLIP10.85□□□□□ -0.676e-7■■■■■ 32.2
MSH6-210ENST00000540021 IBA57Q5T440 356 aaKnown RBP10.85□□□□□ -0.67
MSH6-210ENST00000540021 WDR73Q6P4I2 378 aa10.85□□□□□ -0.67
MSH6-210ENST00000540021 ZNRF1Q8ND25 227 aa10.85□□□□□ -0.67
MSH6-210ENST00000540021 ST6GALNAC6Q969X2 333 aa10.85□□□□□ -0.67
MSH6-210ENST00000540021 MIEN1Q9BRT3 115 aa10.85□□□□□ -0.67
MSH6-210ENST00000540021 CXXC4Q9H2H0 198 aa10.85□□□□□ -0.67
MSH6-210ENST00000540021 BET1LQ9NYM9 111 aa10.85□□□□□ -0.67
MSH6-210ENST00000540021 IL6RP08887 468 aaPredicted RBP10.85□□□□□ -0.67
MSH6-210ENST00000540021 PRDX2P32119 198 aa10.85□□□□□ -0.67
MSH6-210ENST00000540021 TDGF1P3P51864 188 aa10.85□□□□□ -0.67
MSH6-210ENST00000540021 ZNF137PP52743 207 aa10.85□□□□□ -0.67
MSH6-210ENST00000540021 ZFP36L1Q07352 338 aaKnown RBP10.85□□□□□ -0.67
MSH6-210ENST00000540021 Q0VFX4 171 aa10.85□□□□□ -0.67
MSH6-210ENST00000540021 OR4S2Q8NH73 311 aa10.85□□□□□ -0.67
MSH6-210ENST00000540021 SH3BGRL2Q9UJC5 107 aa10.85□□□□□ -0.67
MSH6-210ENST00000540021 RBFOX2O43251 390 aaKnown RBP eCLIP10.84□□□□□ -0.671e-6■□□□□ 8.9
MSH6-210ENST00000540021 IGFBP2P18065 325 aa10.84□□□□□ -0.67
MSH6-210ENST00000540021 MPV17P39210 176 aa10.84□□□□□ -0.67
MSH6-210ENST00000540021 MRPS11P82912 194 aaKnown RBP10.84□□□□□ -0.67
MSH6-210ENST00000540021 DCAF10Q5QP82 559 aa10.84□□□□□ -0.67
MSH6-210ENST00000540021 ATP1A1-AS1Q5TC04 95 aa10.84□□□□□ -0.67
MSH6-210ENST00000540021 FER1L6-AS2Q96M78 137 aa10.84□□□□□ -0.67
MSH6-210ENST00000540021 ZNF703Q9H7S9 590 aaPredicted RBP10.84□□□□□ -0.67
MSH6-210ENST00000540021 ELOVL5Q9NYP7 299 aa10.84□□□□□ -0.67
MSH6-210ENST00000540021 IL19Q9UHD0 177 aa10.84□□□□□ -0.67
MSH6-210ENST00000540021 ZNF835Q9Y2P0 537 aa10.84□□□□□ -0.67
MSH6-210ENST00000540021 INTS1Q8N201 2190 aaKnown RBP10.84□□□□□ -0.67
MSH6-210ENST00000540021 AKAP6Q13023 2319 aa10.84□□□□□ -0.67
MSH6-210ENST00000540021 LINC00473A8K010 186 aa10.84□□□□□ -0.67
MSH6-210ENST00000540021 LMO1P25800 156 aa10.84□□□□□ -0.67
MSH6-210ENST00000540021 TDRG1Q3Y452 100 aa10.84□□□□□ -0.67
MSH6-210ENST00000540021 DHRS13Q6UX07 377 aa10.84□□□□□ -0.67
MSH6-210ENST00000540021 MIR17HGQ75NE6 70 aa10.84□□□□□ -0.67
MSH6-210ENST00000540021 MOGAT3Q86VF5 341 aa10.84□□□□□ -0.67
MSH6-210ENST00000540021 TMEM178AQ8NBL3 297 aa10.84□□□□□ -0.67
MSH6-210ENST00000540021 RNASEH2CQ8TDP1 164 aaKnown RBP10.84□□□□□ -0.67
MSH6-210ENST00000540021 OPN3Q9H1Y3 402 aaPredicted RBP10.84□□□□□ -0.67
MSH6-210ENST00000540021 IL36BQ9NZH7 164 aa10.84□□□□□ -0.67
MSH6-210ENST00000540021 J3QR06 171 aa10.84□□□□□ -0.67
MSH6-210ENST00000540021 DLEU1O43261 78 aa10.84□□□□□ -0.67
MSH6-210ENST00000540021 COX5BP10606 129 aa10.84□□□□□ -0.67
MSH6-210ENST00000540021 REG1BP48304 166 aa10.84□□□□□ -0.67
MSH6-210ENST00000540021 LHX2P50458 406 aa10.84□□□□□ -0.67
MSH6-210ENST00000540021 ASPHD1Q5U4P2 390 aa10.84□□□□□ -0.67
MSH6-210ENST00000540021 OR4B1Q8NGF8 309 aa10.84□□□□□ -0.67
MSH6-210ENST00000540021 RBM14Q96PK6 669 aaKnown RBP10.84□□□□□ -0.67
MSH6-210ENST00000540021 AGMATQ9BSE5 352 aa10.84□□□□□ -0.67
MSH6-210ENST00000540021 TNFSF15O95150 251 aa10.83□□□□□ -0.68
MSH6-210ENST00000540021 ORM2P19652 201 aa10.83□□□□□ -0.68
MSH6-210ENST00000540021 OPRK1P41145 380 aa10.83□□□□□ -0.68
MSH6-210ENST00000540021 ZNF596Q8TC21 504 aa10.83□□□□□ -0.68
MSH6-210ENST00000540021 C11orf1Q9H5F2 150 aa10.83□□□□□ -0.68
MSH6-210ENST00000540021 SEPSECSQ9HD40 501 aaKnown RBP10.83□□□□□ -0.68
MSH6-210ENST00000540021 NRN1Q9NPD7 142 aa10.83□□□□□ -0.68
MSH6-210ENST00000540021 METRNQ9UJH8 293 aa10.83□□□□□ -0.68
MSH6-210ENST00000540021 SSUH2Q9Y2M2 353 aa10.83□□□□□ -0.68
MSH6-210ENST00000540021 FOXH1O75593 365 aa10.83□□□□□ -0.68
MSH6-210ENST00000540021 ZNF766Q5HY98 468 aa10.83□□□□□ -0.68
MSH6-210ENST00000540021 FAM201AQ5SY85 155 aa10.83□□□□□ -0.68
MSH6-210ENST00000540021 IGHV3-21A0A0B4J1V1 117 aa10.83□□□□□ -0.68
MSH6-210ENST00000540021 CHEK1O14757 476 aa10.83□□□□□ -0.68
MSH6-210ENST00000540021 MPDU1O75352 247 aa10.83□□□□□ -0.68
MSH6-210ENST00000540021 KRTCAP3Q53RY4 240 aa10.83□□□□□ -0.68
MSH6-210ENST00000540021 Q6ZS49 121 aa10.83□□□□□ -0.68
MSH6-210ENST00000540021 DIRC2Q96SL1 478 aa10.83□□□□□ -0.68
MSH6-210ENST00000540021 TMEM167BQ9NRX6 74 aa10.83□□□□□ -0.68
MSH6-210ENST00000540021 UQCR10Q9UDW1 63 aa10.83□□□□□ -0.68
MSH6-210ENST00000540021 WDR83OSQ9Y284 106 aa10.83□□□□□ -0.68
MSH6-210ENST00000540021 TRANK1O15050 2925 aa10.83□□□□□ -0.68
MSH6-210ENST00000540021 TRAV3A0A0B4J244 114 aa10.82□□□□□ -0.68
MSH6-210ENST00000540021 H3BTX0 84 aa10.82□□□□□ -0.68
MSH6-210ENST00000540021 CLDN18P56856 261 aa10.82□□□□□ -0.68
MSH6-210ENST00000540021 MZT1Q08AG7 82 aa10.82□□□□□ -0.68
MSH6-210ENST00000540021 Q6P435 159 aa10.82□□□□□ -0.68
MSH6-210ENST00000540021 DPRXA6NFQ7 191 aa10.82□□□□□ -0.68
MSH6-210ENST00000540021 GPR6P46095 362 aaPredicted RBP10.82□□□□□ -0.68
MSH6-210ENST00000540021 RTL8BQ17RB0 113 aa10.82□□□□□ -0.68
MSH6-210ENST00000540021 PMS2CLQ68D20 193 aa10.82□□□□□ -0.68
MSH6-210ENST00000540021 TREML4Q6UXN2 200 aa10.82□□□□□ -0.68
MSH6-210ENST00000540021 C22orf15Q8WYQ4 148 aa10.82□□□□□ -0.68
MSH6-210ENST00000540021 TMEM45BQ96B21 275 aa10.82□□□□□ -0.68
MSH6-210ENST00000540021 LINC00470Q9BZP3 86 aa10.82□□□□□ -0.68
MSH6-210ENST00000540021 ARRDC1-AS1Q9H2J1 176 aa10.82□□□□□ -0.68
MSH6-210ENST00000540021 ZNF355PQ9NSJ1 428 aa10.82□□□□□ -0.68
MSH6-210ENST00000540021 TRGV10A0A0A0MS01 117 aa10.82□□□□□ -0.68
MSH6-210ENST00000540021 SMPD2O60906 423 aa10.82□□□□□ -0.68
MSH6-210ENST00000540021 CA2P00918 260 aa10.82□□□□□ -0.68
MSH6-210ENST00000540021 SLC25A5P05141 298 aaKnown RBP10.82□□□□□ -0.68
MSH6-210ENST00000540021 MYOD1P15172 320 aa10.82□□□□□ -0.68
MSH6-210ENST00000540021 FOXA3P55318 350 aaPredicted RBP10.82□□□□□ -0.68
MSH6-210ENST00000540021 F2Z2F3 143 aa10.81□□□□□ -0.68
MSH6-210ENST00000540021 SP1P08047 785 aa10.81□□□□□ -0.68
MSH6-210ENST00000540021 ADH4P08319 380 aa10.81□□□□□ -0.68
MSH6-210ENST00000540021 ERHP84090 104 aaKnown RBP10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms