RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 BRWD1-AS2P59051 145 aa10.51□□□□□ -0.73
SYNE1-235ENST00000537033 TAS2R31P59538 309 aa10.51□□□□□ -0.73
SYNE1-235ENST00000537033 HERV-K104P61576 105 aa10.51□□□□□ -0.73
SYNE1-235ENST00000537033 CTRB2Q6GPI1 263 aa10.51□□□□□ -0.73
SYNE1-235ENST00000537033 OR5H6Q8NGV6 325 aa10.51□□□□□ -0.73
SYNE1-235ENST00000537033 CD300LFQ8TDQ1 290 aa10.51□□□□□ -0.73
SYNE1-235ENST00000537033 FANCD2OSQ96PS1 177 aa10.51□□□□□ -0.73
SYNE1-235ENST00000537033 COMMD5Q9GZQ3 224 aa10.51□□□□□ -0.73
SYNE1-235ENST00000537033 HIPK2Q9H2X6 1198 aa10.51□□□□□ -0.73
SYNE1-235ENST00000537033 SRD5A3Q9H8P0 318 aa10.51□□□□□ -0.73
SYNE1-235ENST00000537033 RETNQ9HD89 108 aa10.51□□□□□ -0.73
SYNE1-235ENST00000537033 IFT46Q9NQC8 304 aa10.51□□□□□ -0.73
SYNE1-235ENST00000537033 THYN1Q9P016 225 aa10.51□□□□□ -0.73
SYNE1-235ENST00000537033 S4R3C0 116 aa10.51□□□□□ -0.73
SYNE1-235ENST00000537033 A0A1B0GW64 132 aa10.5□□□□□ -0.73
SYNE1-235ENST00000537033 A8MWP6 167 aa10.5□□□□□ -0.73
SYNE1-235ENST00000537033 TMEM127O75204 238 aa10.5□□□□□ -0.73
SYNE1-235ENST00000537033 HPRT1P00492 218 aa10.5□□□□□ -0.73
SYNE1-235ENST00000537033 PTHLHP12272 177 aa10.5□□□□□ -0.73
SYNE1-235ENST00000537033 CBLN1P23435 193 aa10.5□□□□□ -0.73
SYNE1-235ENST00000537033 NEDD8Q15843 81 aa10.5□□□□□ -0.73
SYNE1-235ENST00000537033 AADACL3Q5VUY0 350 aa10.5□□□□□ -0.73
SYNE1-235ENST00000537033 ZNF57Q68EA5 555 aaPredicted RBP10.5□□□□□ -0.73
SYNE1-235ENST00000537033 TMEM17Q86X19 198 aa10.5□□□□□ -0.73
SYNE1-235ENST00000537033 DEFB125Q8N687 156 aa10.5□□□□□ -0.73
SYNE1-235ENST00000537033 DMBX1Q8NFW5 382 aa10.5□□□□□ -0.73
SYNE1-235ENST00000537033 CACNG8Q8WXS5 425 aa10.5□□□□□ -0.73
SYNE1-235ENST00000537033 WDR89Q96FK6 387 aaPredicted RBP10.5□□□□□ -0.73
SYNE1-235ENST00000537033 FAM110AQ9BQ89 295 aa10.5□□□□□ -0.73
SYNE1-235ENST00000537033 AUNIPQ9H7T9 357 aa10.5□□□□□ -0.73
SYNE1-235ENST00000537033 GAR1Q9NY12 217 aaKnown RBP10.5□□□□□ -0.73
SYNE1-235ENST00000537033 DMRT1Q9Y5R6 373 aa10.5□□□□□ -0.73
SYNE1-235ENST00000537033 TENM2Q9NT68 2774 aa10.49□□□□□ -0.73
SYNE1-235ENST00000537033 DNAH7Q8WXX0 4024 aa10.49□□□□□ -0.73
SYNE1-235ENST00000537033 IGLV11-55A0A075B6I3 123 aa10.49□□□□□ -0.73
SYNE1-235ENST00000537033 TMEM213A2RRL7 107 aa10.49□□□□□ -0.73
SYNE1-235ENST00000537033 FCER2P06734 321 aa10.49□□□□□ -0.73
SYNE1-235ENST00000537033 OR2B8PP59922 312 aa10.49□□□□□ -0.73
SYNE1-235ENST00000537033 ERVK-16P61578 105 aa10.49□□□□□ -0.73
SYNE1-235ENST00000537033 ANKRD55Q3KP44 614 aa10.49□□□□□ -0.73
SYNE1-235ENST00000537033 LINC00322Q6ZN03 302 aaPredicted RBP10.49□□□□□ -0.73
SYNE1-235ENST00000537033 CROCCP3Q8IVE0 287 aa10.49□□□□□ -0.73
SYNE1-235ENST00000537033 OR5AP2Q8NGF4 316 aa10.49□□□□□ -0.73
SYNE1-235ENST00000537033 OR52B4Q8NGK2 314 aa10.49□□□□□ -0.73
SYNE1-235ENST00000537033 OR51H1Q8NH63 302 aa10.49□□□□□ -0.73
SYNE1-235ENST00000537033 SRSF8Q9BRL6 282 aaKnown RBP10.49□□□□□ -0.73
SYNE1-235ENST00000537033 WFDC10AQ9H1F0 79 aa10.49□□□□□ -0.73
SYNE1-235ENST00000537033 RNF167Q9H6Y7 350 aa10.49□□□□□ -0.73
SYNE1-235ENST00000537033 PLEKHA2Q9HB19 425 aa10.49□□□□□ -0.73
SYNE1-235ENST00000537033 TMEM140Q9NV12 185 aa10.49□□□□□ -0.73
SYNE1-235ENST00000537033 RBMY1BA6NDE4 496 aaKnown RBP10.48□□□□□ -0.73
SYNE1-235ENST00000537033 MEIS3P1A6NDR6 274 aa10.48□□□□□ -0.73
SYNE1-235ENST00000537033 RBMY1EA6NEQ0 496 aaKnown RBP10.48□□□□□ -0.73
SYNE1-235ENST00000537033 MFSD2BA6NFX1 497 aa10.48□□□□□ -0.73
SYNE1-235ENST00000537033 UPK2O00526 184 aa10.48□□□□□ -0.73
SYNE1-235ENST00000537033 JTBO76095 146 aa10.48□□□□□ -0.73
SYNE1-235ENST00000537033 RBMY1DP0C7P1 496 aaKnown RBP10.48□□□□□ -0.73
SYNE1-235ENST00000537033 MYOD1P15172 320 aa10.48□□□□□ -0.73
SYNE1-235ENST00000537033 EDN2P20800 178 aa10.48□□□□□ -0.73
SYNE1-235ENST00000537033 GPR183P32249 361 aa10.48□□□□□ -0.73
SYNE1-235ENST00000537033 POU2AF1Q16633 256 aa10.48□□□□□ -0.73
SYNE1-235ENST00000537033 KLK9Q2XQG4 91 aa10.48□□□□□ -0.73
SYNE1-235ENST00000537033 THOC7Q6I9Y2 204 aaKnown RBP10.48□□□□□ -0.73
SYNE1-235ENST00000537033 ZNF818PQ6ZRF7 136 aa10.48□□□□□ -0.73
SYNE1-235ENST00000537033 TMEM61Q8N0U2 210 aa10.48□□□□□ -0.73
SYNE1-235ENST00000537033 UXS1Q8NBZ7 420 aa10.48□□□□□ -0.73
SYNE1-235ENST00000537033 GIMAP1Q8WWP7 306 aa10.48□□□□□ -0.73
SYNE1-235ENST00000537033 MARC2Q969Z3 335 aa10.48□□□□□ -0.73
SYNE1-235ENST00000537033 S100A16Q96FQ6 103 aaKnown RBP10.48□□□□□ -0.73
SYNE1-235ENST00000537033 QTRT1Q9BXR0 403 aaKnown RBP10.48□□□□□ -0.73
SYNE1-235ENST00000537033 EHFQ9NZC4 300 aa10.48□□□□□ -0.73
SYNE1-235ENST00000537033 COMMD9Q9P000 198 aa10.48□□□□□ -0.73
SYNE1-235ENST00000537033 KLK9Q9UKQ9 250 aa10.48□□□□□ -0.73
SYNE1-235ENST00000537033 XRCC3O43542 346 aa10.47□□□□□ -0.73
SYNE1-235ENST00000537033 S1PR2O95136 353 aa10.47□□□□□ -0.73
SYNE1-235ENST00000537033 CLEC3BP05452 202 aa10.47□□□□□ -0.73
SYNE1-235ENST00000537033 FGF2P09038 288 aa10.47□□□□□ -0.73
SYNE1-235ENST00000537033 UBE2NLQ5JXB2 153 aa10.47□□□□□ -0.73
SYNE1-235ENST00000537033 PLET1Q6UQ28 207 aa10.47□□□□□ -0.73
SYNE1-235ENST00000537033 RBPMS2Q6ZRY4 209 aaKnown RBP10.47□□□□□ -0.73
SYNE1-235ENST00000537033 HSD17B13Q7Z5P4 300 aaPredicted RBP10.47□□□□□ -0.73
SYNE1-235ENST00000537033 MLXQ9UH92 298 aa10.47□□□□□ -0.73
SYNE1-235ENST00000537033 UFC1Q9Y3C8 167 aa10.47□□□□□ -0.73
SYNE1-235ENST00000537033 SELENOKQ9Y6D0 94 aa10.47□□□□□ -0.73
SYNE1-235ENST00000537033 IGLC7A0M8Q6 106 aa10.46□□□□□ -0.73
SYNE1-235ENST00000537033 CGB1A6NKQ9 187 aa10.46□□□□□ -0.73
SYNE1-235ENST00000537033 SCAF4O95104 1147 aaKnown RBP10.46□□□□□ -0.73
SYNE1-235ENST00000537033 RLN1P04808 185 aa10.46□□□□□ -0.73
SYNE1-235ENST00000537033 TAS2R46P59540 309 aa10.46□□□□□ -0.73
SYNE1-235ENST00000537033 KCTD21Q4G0X4 260 aa10.46□□□□□ -0.73
SYNE1-235ENST00000537033 TM4SF20Q53R12 229 aa10.46□□□□□ -0.73
SYNE1-235ENST00000537033 TMEM69Q5SWH9 247 aa10.46□□□□□ -0.73
SYNE1-235ENST00000537033 BTNL8Q6UX41 500 aa10.46□□□□□ -0.73
SYNE1-235ENST00000537033 CMTM1Q8IZ96 169 aa10.46□□□□□ -0.73
SYNE1-235ENST00000537033 TSPAN14Q8NG11 270 aa10.46□□□□□ -0.73
SYNE1-235ENST00000537033 ZNF502Q8TBZ5 544 aa10.46□□□□□ -0.73
SYNE1-235ENST00000537033 GGTLC1Q9BX51 225 aa10.46□□□□□ -0.73
SYNE1-235ENST00000537033 TRAV3A0A0B4J244 114 aa10.45□□□□□ -0.74
SYNE1-235ENST00000537033 TRAV25A0A0B4J276 109 aa10.45□□□□□ -0.74
SYNE1-235ENST00000537033 MARCH11A6NNE9 402 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms