RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 RBFOX2O43251 390 aaKnown RBP eCLIP9.68□□□□□ -0.86
CLIP1-208ENST00000537004 NDUFB3O43676 98 aa9.68□□□□□ -0.86
CLIP1-208ENST00000537004 HPRT1P00492 218 aa9.68□□□□□ -0.86
CLIP1-208ENST00000537004 FSHBP01225 129 aa9.68□□□□□ -0.86
CLIP1-208ENST00000537004 PAX8Q06710 450 aa9.68□□□□□ -0.86
CLIP1-208ENST00000537004 FAM74A3Q4VXF1 159 aa9.68□□□□□ -0.86
CLIP1-208ENST00000537004 IL34Q6ZMJ4 242 aa9.68□□□□□ -0.86
CLIP1-208ENST00000537004 BPIFCQ8NFQ6 507 aa9.68□□□□□ -0.86
CLIP1-208ENST00000537004 ATP5SQ99766 215 aa9.68□□□□□ -0.86
CLIP1-208ENST00000537004 GAL3ST2Q9H3Q3 398 aa9.68□□□□□ -0.86
CLIP1-208ENST00000537004 RBKSQ9H477 322 aa9.68□□□□□ -0.86
CLIP1-208ENST00000537004 MLXQ9UH92 298 aa9.68□□□□□ -0.86
CLIP1-208ENST00000537004 TNCP24821 2201 aa9.68□□□□□ -0.86
CLIP1-208ENST00000537004 METTL15P1P0C7V9 234 aa9.68□□□□□ -0.86
CLIP1-208ENST00000537004 IGHV4-38-2P0DP08 117 aa9.68□□□□□ -0.86
CLIP1-208ENST00000537004 GNG10P50151 68 aa9.68□□□□□ -0.86
CLIP1-208ENST00000537004 AKR1D1P51857 326 aa9.68□□□□□ -0.86
CLIP1-208ENST00000537004 DEFA5Q01523 94 aa9.68□□□□□ -0.86
CLIP1-208ENST00000537004 LRRC10Q5BKY1 277 aa9.68□□□□□ -0.86
CLIP1-208ENST00000537004 BCL6BQ8N143 479 aaPredicted RBP9.68□□□□□ -0.86
CLIP1-208ENST00000537004 LYG1Q8N1E2 194 aa9.68□□□□□ -0.86
CLIP1-208ENST00000537004 NARS2Q96I59 477 aaKnown RBP9.68□□□□□ -0.86
CLIP1-208ENST00000537004 S1PR3Q99500 378 aa9.68□□□□□ -0.86
CLIP1-208ENST00000537004 C19orf24Q9BVV8 132 aa9.68□□□□□ -0.86
CLIP1-208ENST00000537004 BIN3Q9NQY0 253 aa9.68□□□□□ -0.86
CLIP1-208ENST00000537004 DVL1O14640 695 aa9.67□□□□□ -0.86
CLIP1-208ENST00000537004 DFFBO76075 338 aa9.67□□□□□ -0.86
CLIP1-208ENST00000537004 ATP6V0CP27449 155 aa9.67□□□□□ -0.86
CLIP1-208ENST00000537004 RPL35P42766 123 aaKnown RBP9.67□□□□□ -0.86
CLIP1-208ENST00000537004 KIR2DS2P43631 304 aa9.67□□□□□ -0.86
CLIP1-208ENST00000537004 RAB13P51153 203 aa9.67□□□□□ -0.86
CLIP1-208ENST00000537004 F2RL1P55085 397 aa9.67□□□□□ -0.86
CLIP1-208ENST00000537004 PJVKQ0ZLH3 352 aa9.67□□□□□ -0.86
CLIP1-208ENST00000537004 BTNL8Q6UX41 500 aa9.67□□□□□ -0.86
CLIP1-208ENST00000537004 OR10A7Q8NGE5 316 aa9.67□□□□□ -0.86
CLIP1-208ENST00000537004 DDB2Q92466 427 aa9.67□□□□□ -0.86
CLIP1-208ENST00000537004 H1FXQ92522 213 aaKnown RBP9.67□□□□□ -0.86
CLIP1-208ENST00000537004 ZNF714Q96N38 554 aa9.67□□□□□ -0.86
CLIP1-208ENST00000537004 ZNF251Q9BRH9 671 aa9.67□□□□□ -0.86
CLIP1-208ENST00000537004 KAAG1Q9UBP8 84 aa9.67□□□□□ -0.86
CLIP1-208ENST00000537004 RBMXL2O75526 392 aaKnown RBP9.66□□□□□ -0.86
CLIP1-208ENST00000537004 CCL3L1P16619 93 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 FHITP49789 147 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 MEOX2P50222 304 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 RAB5CP51148 216 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 ERVFRD-1P60508 538 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 AKR1C1Q04828 323 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 SPANXN5Q5MJ07 72 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 TMEM200BQ69YZ2 307 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 TMEM182Q6ZP80 229 aaPredicted RBP9.66□□□□□ -0.86
CLIP1-208ENST00000537004 SLC25A48Q6ZT89 311 aaKnown RBP9.66□□□□□ -0.86
CLIP1-208ENST00000537004 OR2G3Q8NGZ4 309 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 ESM1Q9NQ30 184 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 CACFD1Q9UGQ2 172 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 RFNGQ9Y644 331 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 PRH1P02810 166 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 OR9G9P0C7N8 305 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 CAMLGP49069 296 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 THBS3P49746 956 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 HBG1P69891 147 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 HBG2P69892 147 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 ZNF616Q08AN1 781 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 ARL16Q0P5N6 197 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 HEPN1Q6WQI6 88 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 HAPLN4Q86UW8 402 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 OR4S2Q8NH73 311 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 SPATA3Q8NHX4 192 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 LYPD6BQ8NI32 183 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 GNPNAT1Q96EK6 184 aaPredicted RBP9.66□□□□□ -0.86
CLIP1-208ENST00000537004 DUX5Q96PT3 197 aa9.66□□□□□ -0.86
CLIP1-208ENST00000537004 TSNAXQ99598 290 aaKnown RBP9.66□□□□□ -0.86
CLIP1-208ENST00000537004 STRAPQ9Y3F4 350 aaKnown RBP9.66□□□□□ -0.86
CLIP1-208ENST00000537004 TRAV40A0A0B4J280 105 aa9.65□□□□□ -0.86
CLIP1-208ENST00000537004 FAM90A9PA6NNJ1 464 aa9.65□□□□□ -0.86
CLIP1-208ENST00000537004 IFNA4P05014 189 aa9.65□□□□□ -0.86
CLIP1-208ENST00000537004 NQO2P16083 231 aa9.65□□□□□ -0.86
CLIP1-208ENST00000537004 ERVK-16P61578 105 aa9.65□□□□□ -0.86
CLIP1-208ENST00000537004 SRSF3P84103 164 aaKnown RBP9.65□□□□□ -0.86
CLIP1-208ENST00000537004 RUNX1Q01196 453 aa9.65□□□□□ -0.86
CLIP1-208ENST00000537004 SSX9Q7RTT3 188 aa9.65□□□□□ -0.86
CLIP1-208ENST00000537004 VKORC1L1Q8N0U8 176 aa9.65□□□□□ -0.86
CLIP1-208ENST00000537004 DTD1Q8TEA8 209 aa9.65□□□□□ -0.86
CLIP1-208ENST00000537004 ZNF418Q8TF45 676 aaPredicted RBP9.65□□□□□ -0.86
CLIP1-208ENST00000537004 ADTRPQ96IZ2 230 aa9.65□□□□□ -0.86
CLIP1-208ENST00000537004 PCGF1Q9BSM1 259 aa9.65□□□□□ -0.86
CLIP1-208ENST00000537004 IFNA5P01569 189 aa9.65□□□□□ -0.87
CLIP1-208ENST00000537004 PRB3Q04118 309 aaPredicted RBP9.65□□□□□ -0.87
CLIP1-208ENST00000537004 TMEM14EPQ6UXP3 125 aa9.65□□□□□ -0.87
CLIP1-208ENST00000537004 BRD3OSQ6XYD6 125 aa9.65□□□□□ -0.87
CLIP1-208ENST00000537004 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.65□□□□□ -0.87
CLIP1-208ENST00000537004 ZNF383Q8NA42 475 aa9.65□□□□□ -0.87
CLIP1-208ENST00000537004 ZDHHC16Q969W1 377 aa9.65□□□□□ -0.87
CLIP1-208ENST00000537004 QTRT1Q9BXR0 403 aaKnown RBP9.65□□□□□ -0.87
CLIP1-208ENST00000537004 ZNRD1Q9P1U0 126 aa9.65□□□□□ -0.87
CLIP1-208ENST00000537004 TMEM218A2RU14 115 aa9.64□□□□□ -0.87
CLIP1-208ENST00000537004 CEBPZOSA8MTT3 80 aa9.64□□□□□ -0.87
CLIP1-208ENST00000537004 UMAD1C9J7I0 102 aa9.64□□□□□ -0.87
CLIP1-208ENST00000537004 AGPAT2O15120 278 aa9.64□□□□□ -0.87
CLIP1-208ENST00000537004 ENSAO43768 121 aaKnown RBP9.64□□□□□ -0.87
CLIP1-208ENST00000537004 TSPAN15O95858 294 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms