RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 SLIT2O94813 1529 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 OR4C45A6NMZ5 311 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 H3BT86 120 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 H7C2G1 150 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 I3L521 148 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 M0R036 132 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 KCNK1O00180 336 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 CXCR6O00574 342 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 SLC22A1O15245 554 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 ORC5O43913 435 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 SERPINA7P05543 415 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 CALB1P05937 261 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 NFYAP23511 347 aaPredicted RBP1.07□□□□□ -2.24
CD44-238ENST00000534296 RPS12P25398 132 aaKnown RBP1.07□□□□□ -2.24
CD44-238ENST00000534296 CCR7P32248 378 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 AKR1C3P42330 323 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 TCL1AP56279 114 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 GRK1Q15835 563 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 KRTAP21-3Q3LHN1 58 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 KRTAP13-4Q3LI77 160 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 COQ5Q5HYK3 327 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 SLC36A1Q7Z2H8 476 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 TMEM161BQ8NDZ6 487 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 TTTY13Q9BZ97 58 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 ANAPC10Q9UM13 185 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 KLK5Q9Y337 293 aaPredicted RBP1.07□□□□□ -2.24
CD44-238ENST00000534296 NAV3Q8IVL0 2385 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 EVC2Q86UK5 1308 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 ZNF532Q9HCE3 1301 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 ASH1LQ9NR48 2969 aaKnown RBP1.07□□□□□ -2.24
CD44-238ENST00000534296 C9orf84Q5VXU9 1444 aa1.06□□□□□ -2.24
CD44-238ENST00000534296 PDE4DIPQ5VU43 2346 aa1.06□□□□□ -2.24
CD44-238ENST00000534296 MYO9AB2RTY4 2548 aa1.06□□□□□ -2.24
CD44-238ENST00000534296 C21orf140B9A014 251 aa1.06□□□□□ -2.24
CD44-238ENST00000534296 HLA-DRAP01903 254 aa1.06□□□□□ -2.24
CD44-238ENST00000534296 CRPP02741 224 aa1.06□□□□□ -2.24
CD44-238ENST00000534296 MSMBP08118 114 aa1.06□□□□□ -2.24
CD44-238ENST00000534296 EIF2B2P49770 351 aaKnown RBP1.06□□□□□ -2.24
CD44-238ENST00000534296 CEBPGP53567 150 aa1.06□□□□□ -2.24
CD44-238ENST00000534296 RAB14P61106 215 aa1.06□□□□□ -2.24
CD44-238ENST00000534296 EMX1Q04741 257 aaPredicted RBP1.06□□□□□ -2.24
CD44-238ENST00000534296 TMEM155Q4W5P6 130 aa1.06□□□□□ -2.24
CD44-238ENST00000534296 PCOTHQ58A44 107 aa1.06□□□□□ -2.24
CD44-238ENST00000534296 SAPCD1Q5SSQ6 148 aa1.06□□□□□ -2.24
CD44-238ENST00000534296 GPHB5Q86YW7 130 aa1.06□□□□□ -2.24
CD44-238ENST00000534296 C10orf67Q8IYJ2 551 aa1.06□□□□□ -2.24
CD44-238ENST00000534296 RPP25LQ8N5L8 163 aaKnown RBP1.06□□□□□ -2.24
CD44-238ENST00000534296 GPR32P1Q8NGA4 272 aa1.06□□□□□ -2.24
CD44-238ENST00000534296 OR1L8Q8NGR8 309 aa1.06□□□□□ -2.24
CD44-238ENST00000534296 ZNF563Q8TA94 476 aa1.06□□□□□ -2.24
CD44-238ENST00000534296 ANKRD7Q92527 254 aa1.06□□□□□ -2.24
CD44-238ENST00000534296 PRO2289Q9P1D8 64 aa1.06□□□□□ -2.24
CD44-238ENST00000534296 FN1P02751 2386 aaKnown RBP1.06□□□□□ -2.24
CD44-238ENST00000534296 DOCK10Q96BY6 2186 aa1.06□□□□□ -2.24
CD44-238ENST00000534296 DENND4BO75064 1496 aaPredicted RBP1.05□□□□□ -2.24
CD44-238ENST00000534296 SORL1Q92673 2214 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 KALRNO60229 2985 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 NCKAP5O14513 1909 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 VWDEQ8N2E2 1590 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 TRAV7A0A075B6U4 112 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 IGHV1-18A0A0C4DH31 117 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 IRGMA1A4Y4 181 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 GGT3PA6NGU5 568 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 GOLGA6L19H0YKK7 550 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 SDCBPO00560 298 aaPredicted RBP1.05□□□□□ -2.24
CD44-238ENST00000534296 PLA2G10O15496 165 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 PPBPP02775 128 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 REG1AP05451 166 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 SRP19P09132 144 aaKnown RBP1.05□□□□□ -2.24
CD44-238ENST00000534296 LGALS1P09382 135 aaKnown RBP1.05□□□□□ -2.24
CD44-238ENST00000534296 METTL15P1P0C7V9 234 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 TRGC1P0CF51 173 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 SULT1A3P0DMM9 295 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 SULT1A4P0DMN0 295 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 MARCKSL1P49006 195 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 IFITM2Q01629 132 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 CDK10Q15131 360 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 ELOBQ15370 118 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 LGALS9BQ3B8N2 356 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 CDKL4Q5MAI5 379 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 C1orf194Q5T5A4 169 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 PTRHD1Q6GMV3 140 aaKnown RBP1.05□□□□□ -2.24
CD44-238ENST00000534296 SSX8Q7RTT4 187 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 UMODL1-AS1Q8N2C9 162 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 OR5B17Q8NGF7 314 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 ARL5BQ96KC2 179 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 CNBD2Q96M20 576 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 GINS4Q9BRT9 223 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 MRPL32Q9BYC8 188 aaKnown RBP1.05□□□□□ -2.24
CD44-238ENST00000534296 PARD6GQ9BYG4 376 aaPredicted RBP1.05□□□□□ -2.24
CD44-238ENST00000534296 COMMD5Q9GZQ3 224 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 CHST6Q9GZX3 395 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 PAQR5Q9NXK6 330 aaPredicted RBP1.05□□□□□ -2.24
CD44-238ENST00000534296 ZNF292O60281 2723 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 CPAMD8Q8IZJ3 1885 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 GREB1Q4ZG55 1949 aa1.05□□□□□ -2.24
CD44-238ENST00000534296 RTTNQ86VV8 2226 aa1.04□□□□□ -2.24
CD44-238ENST00000534296 MAST2Q6P0Q8 1798 aa1.04□□□□□ -2.24
CD44-238ENST00000534296 RALGAPA2Q2PPJ7 1873 aa1.04□□□□□ -2.24
CD44-238ENST00000534296 TRBV20OR9-2A0A075B6H5 130 aa1.04□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms